Digital Commons Network^™

Geospatial Modeling Of Land Cover Change In The Chocó-Darien Global Ecoregion Of South America: Assessing Proximate Causes And Underlying Drivers Of Deforestation And Reforestation, José Camilo Fagua

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Chocó-Darien Global Ecoregion (CGE) in South America is one of 25 global biodiversity hotspots prioritized for conservation. I performed the first land-use and land-cover (LULC) change analysis for the entire CGE in this dissertation. There were three main objectives: 1) Select the best available imagery to build annual land-use and land-cover maps from 2001 to 2015 across the CGE. 2) Model LULC across the CGE to assess forest change trends from 2002 to 2015 and identify the effect of proximate causes of deforestation and reforestation. 3) Estimate the effects of underlying drivers on deforestation and reforestation across the CGE …

Insomnia And Use Of Sleep Medications In Predicting Risk Of Alzheimer's Disease In The Cache County Study, Elizabeth Kathleen Vernon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Over 71 million Americans will be over the age of 65 by the year 2030. With this rise in adults aged 65 years and older also comes an exponential rise in the estimated number of individuals with Alzheimer’s disease (AD); this number is expected to exceed 24 million Americans by the year 2040. The number one risk factor for AD is older age; this factor is also associated with an increased risk in developing a sleep disturbance. Sleep disturbances have been associated with an increased risk of cancer, heart disease, and decline in overall health. Recent research has examined the …

Maternal Depression In The United States: A Geographic Comparison Between Geographic Regions And Rurality, Samantha J. Patterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Health disparities exist between rural and urban areas but geographic comparisons of mental health are less studied and conclusive. Maternal depression has not been examined by region or rurality in the United States but might be influenced by geographic locations due to the variance of social support and healthcare available in some locations compared to others. The research focuses on (1) whether rurality increases a mother’s risk of experiencing depression and (2) if region impacts a mother’s risk of depression. I used the NESARC-III data that included three general depressive disorders: major depressive episode, major depressive disorder, and dysthymia. Regions …

Comparing Performance Of Gene Set Test Methods Using Biologically Relevant Simulated Data, Richard M. Lambert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Today we know that there are many genetically driven diseases and health conditions. These problems often manifest only when a set of genes are either active or inactive. Recent technology allows us to measure the activity level of genes in cells, which we call gene expression. It is of great interest to society to be able to statistically compare the gene expression of a large number of genes between two or more groups. For example, we may want to compare the gene expression of a group of cancer patients with a group of non-cancer patients to better understand the genetic …

“I Really Don’T Look For Certifications, It All Has To Do With Personal Relationships”: The Construction Of A Meat Philosophy And Innovation Adoption By Culinary Professionals In The Rocky Mountain Region, Kailie B. Leggett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Demand for new methods of beef production is rising due to concern over potential impacts on human health, animal welfare, and the environment. Researchers at Utah State University have developed a method of beef production from cattle finished on tannin-containing legume forages in the Rocky Mountain Region in order to address those concerns. To ensure success of this product, the demand and marketability needed to be assessed. Food values addressed through new production standards and certifications are communicated through labeling by culinary professionals in the kitchen and behind service counters. This research study utilized qualitative methods to understand how culinary …

Statistical Methods To Account For Gene-Level Covariates In Normalization Of High-Dimensional Read-Count Data, Lauren Holt Lenz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The goal of genetic-based cancer research is often to identify which genes behave differently in cancerous and healthy tissue. This difference in behavior, referred to as differential expression, may lead researchers to more targeted preventative care and treatment. One way to measure the expression of genes is though a process called RNA-Seq, that takes physical tissue samples and maps gene products and fragments in the sample back to the gene that created it, resulting in a large read-count matrix with genes in the rows and a column for each sample. The read-counts for tumor and normal samples are then compared …

The Macroinvertebrate And Fish Communities Of In-Stream Beaver Ponds In Northeastern Utah, Susan Washko

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Beavers were virtually extirpated from North America during the fur trade, but populations have since recovered. Dams built by recolonizing beaver alter stream habitat by forming deep, slow ponds within the streams. Such changes to the habitat is likely to have consequences for organisms such as macroinvertebrates and fish. The objective of this study was to identify the differences in the macroinvertebrate and trout community in beaver ponds and lotic (e.g. flowing reaches of a stream) reaches in tributaries to the Logan River in northeastern Utah. The macroinvertebrate community of beaver ponds had fewer species, fewer numbers, and lower biomass …

Investigating Rapid Concrete Repair Materials And Admixtures, Ivan Quezada

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This dissertation presents a literature review of the state-of-practice for the use of IC in concrete mixtures and how structural engineers and construction engineers can adapt IC to their present and future work. Current high early strength concrete mixtures have natural cracking and shrinkage problems due to the high content of cementitious material or their chemical components. Using IC allows for early strength, enhanced durability, reduced shrinkage and a better curing by providing water that can be absorbed by the cement past after the final set. Rapid hydration and high early strength Portland cement and calcium sulfoaluminate (CSA) concretes are …

A Sociological Evaluation Of A Large Team Science Project: The Iutah Experience, K. Taylor Dean

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many contemporary scientific research projects are composed of large numbers of researchers working together to provide solutions to social issues that affect our society. In an attempt to understand and address these issues, projects have been implemented where researchers from a wide variety of disciplines come together and collaborate. As this research includes a variety researchers, it requires a unique approach. Questions such as how to make these projects as effective as possible, how to properly evaluate these projects, and how to gauge the quality and success of these projects need to be answered.

These are directly addressed in this …

Training Non-Board Certified Behavior Analyst (Bcba) Behavior Specialists To Conduct Trial-Based Functional Analyses In Residential Settings, Devon S. Millington

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study investigated a process for identifying the reasons why a person with an intellectual disability has problem behaviors. This process is called a trial-based functional analysis (TBFA). The researchers wanted to know if a person who was not an expert behavior analyst could be trained to perform the TBFA and if the results obtained from the TBFA could be used to create a program to reduce the problem behavior of a person with an intellectual disability living in a community-based group home for persons with disabilities. The results of this study show that a person who is not an …

Droplet Impact Onto Super-Hydrophobic Surfaces And Determining The Response To Heat And Light Of Terrestrial Cyanobacteria, Benjamin B. Lovett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis examines droplets striking water repelling surfaces as well as the movement of a soil based bacteria under various light and heat conditions. Droplet impact studies have shown that introducing a macroscopic feature to a water repelling surface can reduce the amount of time that droplet is in contact with the surface. By manipulating water droplets to impact different sized needles at varying speeds, we present how a needle can induce a similar reduction in the residence time of the droplet to more widely studied features. Results show the spreading and lift-off characteristics of the droplet are dependent on …

Application Of Winslamm To Evaluate The Effect Of Green Infrastructure Implementation In Northern Utah, Rosa A. Fernández Velásquez

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study provides an evaluation of the performance of the WinSLAMM model in two cities of northern Utah, a region in which it has not been validated to date. Runoff volumes for a series of events from 2015 to 2017 were calculated for six study areas. These results were compared to model outputs to evaluate the prediction accuracy. The model performed poorly when default parameters where used, as expected. Thus, the calibration of runoff coefficient was done with local data. Total suspended solids (TSS), total phosphorus (TP) and total dissolved phosphorus (TDP) were also evaluated and calibrations were developed. The …

Efficacy Of Translocation As A Management Tool For Urban Mule Deer In Utah, Channing R. Howard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An increase in urbanization in the United States has led to an increase in human-wildlife interactions with deer (Odocoileus spp.) which have been able to adapt and thrive in these urban environments. In Utah, urbanization has occurred along the Wasatch Front which was once traditional mule deer (Odocoileus hemionus) winter range habitat. This urban expansion coupled with an increasing use of these urban areas by mule deer, have led to increasing conflicts with deer. Overabundant urban deer have led to increased concerns over safety from deer-vehicle collisions, and damage to personal property including gardens and landscaping. …

A Simple Metabolic Switch May Activate Apomixis In Arabidopsis Thaliana, David Alan Sherwood

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Apomixis, asexual or clonal seed production in plants, can decrease the cost of producing hybrid seed and enable currently open pollinated crops to be converted to more vigorous and higher yielding hybrids that can reproduce themselves through their own seed. Sexual reproduction may be triggered by a programmed stress signaling event that occurs in both the meiocyte, just prior to meiosis, and later in the egg just prior to embryo sac maturation. The prevention of stress signaling and the activation of a pro-growth signal prior to meiosis triggered apomeiosis, the first half of apomixis. The same approach was used prior …

Influence Of Environmental Variables On Survival Rates Of Pronghorn (Antilocapra Americana) Neonates Across Idaho, Brett R. Panting

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study was completed to better understand pronghorn antelope (Antilocapra americana) populations found throughout Idaho. Antelope were studied in three separate and distinct study areas. The Big Desert, Camas Prairie, and Little Lost and Pahsimeroi valleys were all selected as study sites. Idaho Department of Fish and Game (IDFG) is concerned with current pronghorn populations found throughout Idaho. Pronghorn are a valued big game species found in Idaho. Increasing pronghorn populations in Idaho is a focus of IDFG.

We captured and VHF-collared pronghorn fawns found in our three study areas. Fawns were monitored daily with telemetry equipment for …

Red Mite On Blackberry [Acalitus Essigi (Hassan)], Michael Caron, Sheriden M. Hansen, Taun Beddes, Ryan Davis, Ann Mull, Diane G. Alston, Claudia Nischwitz

All Current Publications

Redberry mite is a microscopic pest of blackberry that causes drupelets (small fruit sections) to remain hard and red (or less commonly hard and green) on an otherwise normally-ripened blackberry. The red drupelets can occur from a single drupelet to the entire berry. Redberry mite largely affects late-maturing blackberry varieties. Once it is detected, control is ineffective for that season's crop; control can be obtained in subsequent seasons by a variety of management practices. It was first reported in Utah in 2017 in Davis County

Beneficial Predators: Syrphid Flies, Steven Price, Ron Patterson

All Current Publications

This fact sheet describes Syrphid flies, a diverse family of insects which can provide both biocontrol and pollination services. While not available for purchase, natural populations can be conserved through wise insecticide use practices and enhancing floral resources. Beneficial insects, including syrphid flies, are a useful tool for home gardeners and commercial agriculturalists alike to keep damaging pest populations to a minimum.

Identification And Engineering Of Nonribosomal Peptide Biosynthetic Systems, Fuchao Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research focuses on the understanding and engineering of nonribosomal peptide biosynthetic pathways in Streptomyces coelicolor CH999, Escherichia coli BAP1 and Saccharomyces cerevisiae BJ5464-NpgA. The biosynthetic systems of indigoidine from bacteria and beauvericin/bassianolide from fungi were studied in this research. The production of these valuble products was significantly increased by enhancing their synthetic pathway with metabolic engineering approaches.

Indigoidine is a bacterial natural product with antioxidant and antimicrobial activities. Its bright blue color resembles the industrial dye indigo, thus representing a new natural blue dye that may find uses in industry. Indigo is a dark blue crystalline powder and has …

Carbon Monoxide On Demand: Light-Induced Co Release Of Flavonols, Stacey N. Anderson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Carbon monoxide (CO) is an extremely useful molecule with applications in industrial manufacturing, synthetic procedures as a C1 building block, and as a potential pharmaceutical to produce anti-inflammatory effects and vasodilation. However, the toxicity associated with CO has prevented its full utilization. In order to safely handle CO, compounds and molecules have been developed that act as storage materials for the gas. Ideal storage platforms only release CO upon stimulation via a trigger. Light activation is the most desirable trigger as it can be regulated in terms of the intensity and the wavelength of light used. The majority of light-induced …

Development And Application Of A Reverse Genetics System For Zika Virus, Jordan C. Frank

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Zika virus (ZIKV) has emerged in many regions of the world, with infection outcomes spanning from no apparent illness to crippling nervous system disease. ZIKV and its close relatives, West Nile virus, Japanese encephalitis virus, dengue virus, and yellow fever virus are primarily transmitted by mosquitoes. Three ZIKVs were selected: MR-766 (Uganda, 1947), P6-740 (Malaysia, 1966), and PRVABC-59 (Puerto Rico, 2015), whose place of origin and time of isolation differ substantially. Stable, complementary DNA (cDNA) copies of the three ZIKV RNA genomes were cloned to examine the significance of viral and host genetic variations in directing ZIKV infection outcomes. Using …

Production And Biocompatibility Of Spider Silk Proteins In Goat Milk, Richard E. Decker Jr

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to its strength, flexibility, and biocompatibility, spider silk is a highly appealing material for applications in the medical field. Unfortunately, natural spider silk is difficult to obtain in large quantities because spiders are territorial and cannibalistic, making them impractical to farm. Synthetic spider silk proteins produced by transgenic hosts such as bacteria and goats have made it possible to obtain the quantities of spider silk needed to study it more fully and to investigate its potential uses. The spider silk proteins produced in our laboratory do not have an optimal purification method to remove all of the non-biocompatible contaminants …

Investigation Of The Molecular Mechanisms Of The Shigella Type Iii Secretion System Tip Complex, Abram R. Bernard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Shigella are bacteria that are responsible for millions of infections and hundreds of thousands of deaths every year. The emergence of antibiotic resistant Shigella adds to the potentially devastating effect that these bacteria can have on human health. Shigella flexneri utilize specialized molecular machinery called the Type III secretion system to infect humans and cause disease. Research of this machinery promises to provide the knowledge, tools, and direction for the development of new avenues to combat shigellosis. This dissertation presents studies of two Shigella proteins, invasion plasmid antigens C and D (IpaC and IpaD). These proteins are part of a …

The Intergenerational Transmission Of Parental Practices That Influence The Educational Outcome Of Latinxs In The United States, Ana E. Kemple Reeves

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Parental involvement practices in education have traditionally referred to overt forms of involvement such as attending school meetings, parent teacher conferences, and volunteering at the school. Research suggests that Latinx parents do not utilize these approaches as much as they do subtler practices. These practices are manifested in parents’ communication with their children, their parenting styles, and the academic expectations they place on their children. The current study intended to recognize the parental practices used by Latinx parents that contribute to educational attainment and combat fixed beliefs regarding their lack of involvement in their children’s education. The data collection was …

Efficient Exploration Of Many Variables And Interactions Using Regularized Regression, Tyson S. Barrett, Ginger Lockhart

Psychology Faculty Publications

The prevention sciences often face several situations that can compromise the statistical power and validity of a study. Among these, research can (1) have data with many variables, sometimes with low sample sizes, (2) have highly correlated predictors, (3) have unclear theory or empirical evidence related to the research questions, and/or (4) have difficulty selecting the proper covariates in observational studies. Modeling in these situations is difficult—and at times impossible—with conventional methods. Fortunately, regularized regression—a machine learning technique—can aid in exploring datasets that are otherwise difficult to analyze, allowing researchers to draw insights from these data. Although many of these …

Spoons Brought To America, Brittany Fitzgerald

USU Student Folklore Fieldwork

[Framed spoon display, with a photo of the Woffinden family, a sketch of the Alaska, a small placard, and two spoons. The larger spoon is flattened on one side. Text of the placard:

"SPOONS BROUGHT TO AMERICA

By:

Walter Woffinden Sr.

Mary Jane Denton Woffinden

Mary Elizabeth (Lizzie)

Sarah Ellen (Nellie)(baby)

Horace

Thomas (not shown)

From Liverpool, England

On

April 22, 1893

Aboard the SS Alaska

Arrived, New York Harbor

May 1, 1893"]

Ncer Assistance Agreement Annual Progress Report For Grant #83582401 - Assessment Of Stormwater Harvesting Via Manage Aquifer Recharge (Mar) To Develop New Water Supplies In The Arid West: The Salt Lake Valley Example, Ryan Dupont, Joan E. Mclean, Richard C. Peralta, Sarah E. Null, Douglas B. Jackson-Smith

Civil and Environmental Engineering Faculty Publications

The goals of the original proposed project remain the same, that is, to test the hypothesis that Managed Aquifer Recharge (MAR) for stormwater harvesting is a technically feasible, socially and environmentally acceptable, economically viable, and legally feasible option for developing new water supplies for arid Western urban ecosystems experiencing increasing population, and climate change pressures on existing water resources. The project is being carried out via three distinct but integrated components that include: 1) Monitoring of existing distributed MAR harvesting schemes involving a growing number of demonstration Green Infrastructure (GI) test sites; 2) Integrated stormwater/vadose zone/groundwater/ ecosystem services modeling; and …

The Utah Statesman, November 27, 2018, Utah State University

The Utah Statesman

Weekly student newspaper of Utah State University in Logan.

The Contribution Of The Descending Pain Modulatory Pathway In Opioid Tolerance, Lindsay M. Lueptow, Amanda K. Fakira, Erin N. Bobeck

Biology Faculty Publications

Opioids remain among the most effective pain-relieving therapeutics. However, their long-term use is limited due to the development of tolerance and potential for addiction. For many years, researchers have explored the underlying mechanisms that lead to this decreased effectiveness of opioids after repeated use, and numerous theories have been proposed to explain these changes. The most widely studied theories involve alterations in receptor trafficking and intracellular signaling. Other possible mechanisms include the recruitment of new structural neuronal and microglia networks. While many of these theories have been developed using molecular and cellular techniques, more recent behavioral data also supports these …

Estimating Actual Evapotranspiration From Stony-Soils In Montane Ecosystems, Kshitij Parajuli, Scott B. Jones, David G. Tarboton, Gerald N. Flerchinger, Lawrence E. Hipps, L. Niel Allen, Mark S. Seyfried

Plants, Soils, and Climate Faculty Publications

Quantification of evapotranspiration (ET) is crucial for understanding the water balance and for efficient water resources planning. Agricultural settings have received most attention regarding ET measurements while less knowledge is available for actual ET (ET_A) in natural ecosystems, many of which have soils containing significant amounts of stones. This study is focused on modelling ET_A from stony soil, particularly in montane ecosystems where we estimate the contribution of stone content on water retention properties in soil. We employed a numerical model (HYDRUS-1D) to simulate ET_A in natural settings in northern Utah and southern Idaho during the …

Phylogeny And Population Genetic Analyses Reveals Cryptic Speciation In The Bombus Fervidus Species Complex (Hymenoptera: Apidae), Jonathan B. Koch, Juanita Rodriguez, James P. Pitts, James P. Strange

Ecology Center Publications

Bumble bees (Bombus Latrielle) are significant pollinators of flowering plants due to their large body size, abundant setae, and generalist foraging strategies. However, shared setal coloration patterns among closely and distantly related bumble bee species makes identification notoriously difficult. The advent of molecular genetic techniques has increased our understanding of bumble bee evolution and taxonomy, and enables effective conservation policy and management. Individuals belonging to the North American Bombus fervidus species-complex (SC) are homogenous in body structure but exhibit significant body color phenotype variation across their geographic distribution. Given the uncertainty of the genealogical boundaries within the SC, some …