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Dacar Cas/Somali Red Aloe: A New Species Of Aloe (Asphodelaceae) From Somaliland, Mary E. Barkworth, Ahmed Ibrahim Awale, Faisal Jama Gelle

Biology Faculty Publications

A new species of Aloe (Asphodelaceae) is described from Somaliland. It differs from other species in forming large clumps and in having sap that is initially yellow but quickly turns bright red and then dark red or reddish-brown, paniculate red-flowered inflorescences and uniformly coloured leaves with red teeth. Its recognition raises the number of species known from the combined area of Somaliland and Somalia s.s. from 31 to 36. A map portraying species density of Aloe by country, as that genus is now interpreted, shows that Aloe has its highest density on islands in the Indian Ocean but that, within …

Transition State Analysis Of The Reaction Catalyzed By The Phosphotriesterase From Sphingiobium Sp. Tcm1, Andrew N. Bigley, Dao Feng Xiang, Tamari Narindoshvili, Charlie W. Burgert, Alvan C. Hengge, Frank M. Raushel

Chemistry and Biochemistry Faculty Publications

Organophosphorus flame retardants are stable toxic compounds used in nearly all durable plastic products and are considered major emerging pollutants. The phosphotriesterase from Sphingobium sp. TCM1 (Sb-PTE) is one of the few enzymes known to be able to hydrolyze organophosphorus flame retardants such as triphenyl phosphate and tris(2-chloroethyl) phosphate. The effectiveness of Sb-PTE for the hydrolysis of these organophosphates appears to arise from its ability to hydrolyze unactivated alkyl and phenolic esters from the central phosphorus core. How Sb-PTE is able to catalyze the hydrolysis of the unactivated substituents is not known. To interrogate the catalytic …

Curriculum Subcommittee Minutes, February 7, 2019, Utah State University

Educational Policies Committee

Program Proposals

• Offering a Minor in Hunger and Food Security Studies
• Discontinuing the Bachelor of Science degree in Nutrition, Dietetics and Food Sciences
• Changing the name of the Parks and Recreation program to Recreation Management program
• Offering an RN to BSN Completion Program
• Offering a Minor in Mechanical Engineering
• Establishing a Center for Anticipatory Intelligence
• Offering an (undergraduate) Emphasis in Anticipatory Intelligence
• Changing the department name from Geology to Earth Sciences

Semester Course Approval Reviews

Other

• EPC/Curriculum Handbook

Educational Policies Committee Minutes, February 7, 2019, Utah State University

Educational Policies Committee

• Curriculum Subcommittee report
• Academic Standards Subcommittee report
• General Education Subcommittee report
• EPC/Curriculum Handbook

Educational Policies Committee Agenda, February 7, 2019, Utah State University

Educational Policies Committee

• Curriculum Subcommittee
• Academic Standards Subcommittee
• General Education Subcommittee
• EPC/Curriculum Handbook

Curriculum Subcommittee Agenda, February 7, 2019, Utah State University

Educational Policies Committee

Program Proposals

• Offering a Minor in Hunger and Food Security Studies
• Discontinuing the Bachelor of Science degree in Nutrition, Dietetics and Food Sciences
• Changing Parks and Recreation program name to Recreation Management program
• Offering an RN to BSN Completion Program
• Offering a Minor in Mechanical Engineering
• Establishing a Center for Anticipatory Intelligence
• Offering an (undergraduate) Emphasis in Anticipatory Intelligence
• Changing the department name from Geology to Earth Sciences

Semester Course Approval Reviews

Other

• EPC/Curriculum Handbook

Does Work-Induced Fatigue Accumulate Across Three Compressed 12 Hour Shifts In Hospital Nurses And Aides?, Brennan J. Thompson

Kinesiology and Health Science Faculty Publications

Fatigue-related impairments in the nursing workforce contribute to a multitude of health, safety, and economic consequences at the individual, organizational and societal levels. Long and compressed work schedules are commonly worked in the healthcare industry, but more research is needed to understand the cumulative effects of multiple work shifts on physiology-based performance outcomes in nurses. The purpose of this study was to compare the effects of a single nursing work shift versus three compressed (one every 24 hours) 12 hour shifts on performance-based fatigue in nurses and aides. Twenty-six fulltime hospital working nurses and aides (age = 36.1 ± 13.3 …

Employing Plant Functional Groups To Advance Seed Dispersal Ecology And Conservation, Clare Aslan, Noelle G. Beckman, Haldre S. Rogers, Judie Bronstein, Damaris Zurell, Florian Hartig, Katriona Shea, Liba Pejchar, Mike Neubert, John Poulsen, Janneke Hillerislambers, Maria Miriti, Bette Loiselle, Edu Effiom, Jenny Zambrano, Eugene W. Schupp, Et Al.

Biology Faculty Publications

Seed dispersal enables plants to reach hospitable germination sites and escape natural enemies. Understanding when and how much seed dispersal matters to plant fitness is critical for understanding plant population and community dynamics. At the same time, the complexity of factors that determine if a seed will be successfully dispersed and subsequently develop into a reproductive plant is daunting. Quantifying all factors that may influence seed dispersal effectiveness for any potential seed-vector relationship would require an unrealistically large amount of time, materials and financial resources. On the other hand, being able to make dispersal predictions is critical for predicting whether …

New Biological Engineering Department Head Named At Usu | College Of Engineering, Utah State University

College of Engineering News

Utah State University’s Department of Biological Engineering is under new leadership. Industry veteran and professor D. Keith Roper took the helm at the department at the beginning of the spring semester. Roper brings a wealth of experience and leadership to the position and says he’s eager to usher in exciting changes.

Usu Engineering Graduate Student Secures Prestigious Navy Internship | College Of Engineering, Utah State University

College of Engineering News

Utah State University graduate student Lori Caldwell will take part in the prestigious Naval Research Enterprise Internship Program, or NREIP. Caldwell, a former student president of the USU chapter of the Society of Women Engineers and founder of two successful science and engineering camps for local high school students, was one of approximately 75 graduate students nationwide to receive a 2019 NREIP award. Caldwell is concurrently pursuing a master’s degree in biological engineering, advised by Dr. Elizabeth Vargis, and a PhD in engineering education, advised by Dr. Angela Minichiello.

Estimability Of Migration Survival Rates From Integrated Breeding And Winter Capture–Recapture Data, Clark S. Rushing

Ecology Center Publications

Long‐distance migration is a common phenomenon across the animal kingdom but the scale of annual migratory movements has made it difficult for researchers to estimate survival rates during these periods of the annual cycle. Estimating migration survival is particularly challenging for small‐bodied species that cannot carry satellite tags, a group that includes the vast majority of migratory species. When capture–recapture data are available for linked breeding and non‐breeding populations, estimation of overall migration survival is possible but current methods do not allow separate estimation of spring and autumn survival rates. Recent development of a Bayesian integrated survival model has provided …

Species Diversity Associated With Foundation Species In Temperate And Tropical Forests, Aaron M. Ellison, Hannah L. Buckley, Bradley S. Case, Dairon Cardenas, Álvaro J. Duque, James A. Lutz, Jonathan A. Myers, David A. Orwig, Jess K. Zimmerman

Ecology Center Publications

Foundation species define and structure ecological communities but are difficult to identify before they are declining. Yet, their defining role in ecosystems suggests they should be a high priority for protection and management while they are still common and abundant. We used comparative analyses of six large forest dynamics plots spanning a temperate-to-tropical gradient in the Western Hemisphere to identify statistical “fingerprints” of potential foundation species based on their size-frequency and abundance-diameter distributions, and their spatial association with five measures of diversity of associated woody plant species. Potential foundation species are outliers from the common “reverse-J” size-frequency distribution, and have …

Climate Change, Woodpeckers, And Forests: Current Trends And Future Modeling Needs, Eric S. Walsh, Kerri T. Vierling, Eva Strand, Kristina Bartowitz, Tara W. Hudiburg

Aspen Bibliography

The structure and composition of forest ecosystems are expected to shift with climate‐induced changes in precipitation, temperature, fire, carbon mitigation strategies, and biological disturbance. These factors are likely to have biodiversity implications. However, climate‐driven forest ecosystem models used to predict changes to forest structure and composition are not coupled to models used to predict changes to biodiversity. We proposed integrating woodpecker response (biodiversity indicator) with forest ecosystem models. Woodpeckers are a good indicator species of forest ecosystem dynamics, because they are ecologically constrained by landscape‐scale forest components, such as composition, structure, disturbance regimes, and management activities. In addition, they are …

Faculty Senate Agenda, February 4, 2019, Utah State University

Faculty Senate & Faculty Senate Executive Committee

• EPC Monthly Report – January 10, 2019
• Academic Freedom and Tenure Annual Report
• Council on Teacher Education Annual Report
• 405.7.2 – External Reviewers
• Greenhouse Gas Resolution
• 403.3.1 – Standards of Conduct – Faculty Responsibilities to Students
• 403.3.2 – Standards of Conduct – Professional Obligations
• 405.2.1 – 405.3.2 – 405.5.1 – 405.10.1 Community Engagement Inclusion
• 407.1.1 – Non Punitive Measure
• 407.8.5(3) – Sexual Harassment
• 407.11.2(2) - Notification of Faculty Member
• 407.11.3(2) – Protection of Complainant and Others

Faculty Senate Minutes, February 4, 2019, Utah State University

Faculty Senate & Faculty Senate Executive Committee

• Academic Freedom and Tenure
• Council on Teacher Education
• Greenhouse Gas Resolution

Nutrient Acquisition Strategies Augment Growth In Tropical N2‐Fixing Trees In Nutrient‐Poor Soil And Under Elevated Co2, Megan K. Nasto, Klaus Winter, Benjamin L. Turner, Cory C. Cleveland

Ecology Center Publications

Tropical forests play a dominant role in the global carbon (C) cycle, and models predict increases in tropical net primary productivity (NPP) and C storage in response to rising atmospheric carbon dioxide (CO₂) concentrations. The extent to which increasing CO₂ will enhance NPP depends in part on the availability of nitrogen (N) and phosphorus (P) to support growth. Some tropical trees can potentially overcome nutrient limitation by acquiring N via symbiotic dinitrogen (N₂) fixation, which may provide a benefit in acquiring P via investment in N‐rich phosphatase enzymes or arbuscular mycorrhizal (AM) fungi. We conducted …

Biogeochemical Recuperation Of Lowland Tropical Forest During Succession, Benjamin W. Sullivan, Rachel L. Nifong, Megan K. Nasto, Silvia Alvarez-Clare, Camie M. Dencker, Fiona M. Soper, Kevin T. Shoemaker, F. Yoko Ishida, Joana Zaragoza-Castells, Eric A. Davidson, Cory C. Cleveland

Biology Faculty Publications

High rates of land conversion and land use change have vastly increased the proportion of secondary forest in the lowland tropics relative to mature forest. As secondary forests recover following abandonment, nitrogen (N) and phosphorus (P) must be present in sufficient quantities to sustain high rates of net primary production and to replenish the nutrients lost during land use prior to secondary forest establishment. Biogeochemical theory and results from individual studies suggest that N can recuperate during secondary forest recovery, especially relative to P. Here, we synthesized 23 metrics of N and P in soil and plants from 45 secondary …

Agricultural Safety Education: Formative Assessment Of A Curriculum Integration Strategy, Michael L. Pate, Rebecca G. Lawver, Scott W. Smalley, Dustin K. Perry, Lorann Stallones, Alyx Shultz

Applied Sciences, Technology and Education Faculty Publications

The purpose of this study was to assess an agricultural tractor and machinery safety curriculum for teacher training that focused on hands-on integration activities to assist with training youth in machinery safety skills. Teachers attended a single ten-hour summer training seminar hosted in Montana, South Dakota, or Utah during 2017. Teachers completed the National Tractor and Machinery Safe Operation (NSTMOP) exam to measure their existing knowledge prior to beginning the training. Upon seminar completion, teachers took an NSTMOP post-test to measure their knowledge gain of agricultural safety practices and hazard recognition associated with machinery and tractors. A total of 116 …

The Birch Creek Canids And Dogs As Transport Labor In The Intermountain West, Martin H. Welker, David A. Byers

Sociology, Social Work and Anthropology Faculty Publications

Historically, domestic dogs (Canis familiaris) have been documented as central features of Intermountain West and Great Plains Native American camps. Some of these dogs were bred specifically for largeness and stamina to haul travois and to carry pannier-style packs. Ethnographic accounts frequently highlight the importance of dogs in moving through the Intermountain West and the plains, reporting loads as heavy as 45 kg (100 lbs). We calculated body mass from skeletal morphometric data and used these to estimate prehistoric and historic dog load capacities for travois and pannier-style packs in the Intermountain West, Great Plains, and Great Basin. Specimens of …

Genetic Loci Associated With Salt Tolerance In Advanced Breeding Populations Of Tetraploid Alfalfa Using Genome-Wide Association Studies, Xiang-Ping Liu, Charles Hawkins, Michael D. Peel, Long-Xi Yu

Plants, Soils, and Climate Faculty Publications

Many agricultural lands in the western United States consist of soil with high concentrations of salt, which is detrimental to alfalfa (Medicago sativa L.) growth and production, especially in the region where water resource is limited. Developing alfalfa varieties with salt tolerance is imperative for sustainable production under increasing soil salinity. In the present study, we used advanced alfalfa breeding populations and evaluated five traits related to salt tolerance including biomass dry weight (DW) and fresh weight (FW), plant height (PH), leaf relative water content (RWC), and stomatal conductance (SC) under control and salt stress. Stress susceptibility index (SSI) …

Geospatial Modeling Of Land Cover Change In The Chocó-Darien Global Ecoregion Of South America; One Of Most Biodiverse And Rainy Areas In The World, José Camilo Fagua, R. Douglas Ramsey

Ecology Center Publications

The tropical rain forests of northwest South America fall within the Chocó-Darien Global Ecoregion (CGE). The CGE is one of 25 global biodiversity hotspots prioritized for conservation due to its high biodiversity and endemism as well as threats due to deforestation. The analysis of land-use and land-cover (LULC) change within the CGE using remotely sensed imagery is challenging because this area is considered to be one of the rainiest places on the planet (hence high frequency of cloud cover). Furthermore, the availability of high-resolution remotely sensed data is low for developing countries before 2015. Using the Random Forest ensemble learning …

Oxygen Consumption And Sulfate Reduction In Vegetated Coastal Habitats: Effects Of Physical Disturbance, Kasper Elgetti Brodersen, Stacey M. Trevathan-Tackett, Daniel A. Nielsen, Rod M. Connolly, Catherine E. Lovelock, Trisha B. Atwood, Peter I. Macreadie

Ecology Center Publications

Vegetated coastal habitats (VCHs), such as mangrove forests, salt marshes and seagrass meadows, have the ability to capture and store carbon in the sediment for millennia, and thus have high potential for mitigating global carbon emissions. Carbon sequestration and storage is inherently linked to the geochemical conditions created by a variety of microbial metabolisms, where physical disturbance of sediments may expose previously anoxic sediment layers to oxygen (O2), which could turn them into carbon sources instead of carbon sinks. Here, we used O2, hydrogen sulphide (H2S) and pH microsensors to determine how biogeochemical conditions, and thus aerobic and anaerobic metabolic …

Ecological Consequences Of Anomalies In Atmospheric Moisture And Snowpack, Aaron N. Johnston, Jason E. Bruggeman, Aidan T. Beers, Erik A. Beever, Roger G. Christophersen, Jason I. Ransom

Wildland Resources Faculty Publications

Although increased frequency of extreme‐weather events is one of the most secure predictions associated with contemporary climate change, effects of such events on distribution and abundance of climate‐sensitive species remain poorly understood. Montane ecosystems may be especially sensitive to extreme weather because of complex abiotic and biotic interactions that propagate from climate‐driven reductions in snowpack. Snowpack not only protects subnivean biotas from extreme cold, but also influences forage availability through timing of melt‐off and water availability. We related relative abundances of an alpine mammal, the American pika (Ochotona princeps), to measures of weather and snowpack dynamics over an …

Soil And Vegetation Survey Of Antelope Pasture, Curlew Grazing Allotment, Oneida County, Id, Merran Owen, Kari E. Veblen, Thomas A. Monaco, Janis Boettinger

Wildland Resources Faculty Publications

Antelope Pasture, located in the Black Pine Valley of Oneida County, Idaho, is a 1500-acre portion of the Curlew Grazing Allotment, managed by the Pocatello Field Office of the BLM (Figure 1). The pasture is heavily invaded with exotic annuals such as cheatgrass (Bromus tectorum), halogeton (Halogeton glomeratus), and clasping pepperweed (Lepidium perfoliatum), and grazing is temporarily discontinued. Land-use history of the pasture includes livestock grazing, possible homesteading and cultivation of Agropyron cristatum (crested wheatgrass).

Back To The Future: Conserving Functional And Phylogenetic Diversity In The Amphibian-Climate Refuges, Ricardo Lourenço-De-Moraes, Felipe S. Campos, Rodrigo B. Ferreira, Mirco Solé, Karen H. Beard, Rogério P. Bastos

Ecology Center Publications

Climate refuges have been used by several species over historical climate change. Ectothermic species often display good models for climate change studies because they are highly sensitive to temperature. Analysis of species loss with ecosystem and evolutionary values helps to understand environmental processes and climate change consequences. We determined the functional and phylogenetic diversity of amphibians in the Atlantic Forest hotspot, using multiple models representing present and future conditions. Through a novel approach, we predict species’ threat status by 2080, following the IUCN’s criterion B1. Our results estimate a drastic reduction in species richness, ecosystem functioning and evolutionary history at …

Refernment: An R Package For Annotating Rna Editing In Plastid Genomes, Tanner A. Robison, Paul G. Wolf

Biology Faculty Publications

PREMISE OF THE STUDY: In the absence of cDNA, the annotation of RNA editing in plastomes must be done manually, representing a significant time cost to those studying the organellar genomes of ferns and hornworts.

METHODS AND RESULTS: We developed an R package to automatically annotate apparent nonsense mutations in plastid genomes. The software successfully annotates such sites and results in no false positives for data with no sequencing or assembly errors.

CONCLUSIONS: Compared to manual annotation, ReFernment offers greater speed and accuracy for annotating RNA editing sites. This software should be especially useful for researchers generating large numbers of …

The Utah Statesman, January 29, 2019, Utah State University

The Utah Statesman

Weekly student newspaper of Utah State University in Logan.

Predatory Hymenopteran Assemblages In Boreal Alaska: Associations With Forest Composition And Post-Fire Succession, Alexandria Wenninger, Teresa Hollingsworth, Diane Wagner

Aspen Bibliography

Changes to the fire regime in boreal Alaska are shifting the ratio of coniferous to deciduous dominance on the landscape. The increase in aspen and birch may have important effects on predatory hymenopteran assemblages by providing a source of extrafloral nectar and increasing prey availability. Furthermore, fire-induced changes in successional age alter habitat structure and microclimate in ways that may favor ants. This study is the first to characterize the influence of fire-related vegetation changes on boreal predatory hymenopteran assemblages. We compare the abundance, species richness, and composition of predatory hymenopteran assemblages among forests at different stages of succession and …

Catalytic Mechanism For The Conversion Of Salicylate Into Catechol By The Flavin-Dependent Monooxygenase Salicylate Hydroxylase, Débora M. A. Costa, Stefanya V. Gómez, Simara S. De Araújo, Mozart S. Pereira, Rosemeire B. Alves, Denize C. Favaro, Alvan C. Hengge, Ronaldo A. P. Nagem, Tiago A. S. Brandão

Chemistry and Biochemistry Faculty Publications

Salicylate hydroxylase (NahG) is a flavin-dependent monooxygenase that catalyzes the decarboxylative hydroxylation of salicylate into catechol in the naphthalene degradation pathway in Pseudomonas putida G7. We explored the mechanism of action of this enzyme in detail using a combination of structural and biophysical methods. NahG shares many structural and mechanistic features with other versatile flavin-dependent monooxygenases, with potential biocatalytic applications. The crystal structure at 2.0 Å resolution for the apo form of NahG adds a new snapshot preceding the FAD binding in flavin-dependent monooxygenases. The k_cat/K_m for the salicylate reaction catalyzed by the holo form is …

Major Grant Awarded To Usu Biological Engineering Professor | College Of Engineering, Utah State University

College of Engineering News

USU biological engineering assistant professor Elizabeth Vargis received a three-year grant from the National Eye Institute for her ongoing research in better understanding why new blood cells form during retinal disease.