Digital Commons Network^™

Towards More Realistic Estimates Of Dom Decay In Streams: Incubation Methods, Light, And Non-Additive Effects, Julia E. Kelso, Emma J. Rosi, Michelle A. Baker

Ecology Center Publications

Dissolved organic matter (DOM) is the largest pool of organic matter in aquatic ecosystems and is a primary substrate for microbial respiration in streams. However, understanding the controls on DOM processing by microbes remains limited, and DOM decay rates remain largely unconstrained. Many DOM decay rates are quantified with bioassays in dark bottles, which may underestimate DOM decay in streams because these bioassays do not include a benthic zone and do not account for abiotic factors of DOM loss, such as photodegradation and volatilization. We measured decay of labile and semi-labile DOM over 3 d in experimental streams and bottle …

Brain Micrornas Among Social And Solitary Bees, Karen M. Kapheim, Beryl M. Jones, Eirik Søvik, Eckart Stolle, Robert M. Waterhouse, Guy Bloch, Yehuda Ben-Shahar

Biology Faculty Publications

Evolutionary transitions to a social lifestyle in insects are associated with lineage-specific changes in gene expression, but the key nodes that drive these regulatory changes are unknown. We examined the relationship between social organization and lineage-specific microRNAs (miRNAs). Genome scans across 12 bee species showed that miRNA copy-number is mostly conserved and not associated with sociality. However, deep sequencing of small RNAs in six bee species revealed a substantial proportion (20–35%) of detected miRNAs had lineage-specific expression in the brain, 24–72% of which did not have homologues in other species. Lineage-specific miRNAs disproportionately target lineage-specific genes, and have lower expression …

Discovery Of A Novel Analogue Of Fr901533 And The Corresponding Biosynthetic Gene Cluster From Streptosporangium Roseum No. 79089, Fuchao Xu, Yonghong Liang, Jie Ren, Siyuan Wang, Jixun Zhan

Biological Engineering Faculty Publications

FR901533 (1, also known as WS79089B), WS79089A (2), and WS79089C (3) are polycyclic aromatic natural products with promising inhibitory activity to endothelin-converting enzymes. In this work, we isolated five tridecaketide products from Streptosporangium roseum No. 79089, including 1-3, benaphthamycin (4) and a novel FR901533 analogue (5). The structure of 5 was characterized based on spectroscopic data. Compared to the major product 2, the new compound 5 has an additional hydroxyl group at C-12 and an extra methyl group at the 13-OH. The configuration of C-19 of these compounds …

In Vitro Digestibility Of Mountain-Grown Irrigated Perennial Legume, Grass And Forb Forages Is Influenced By Elevated Non-Fibrous Carbohydrates And Plant Secondary Compounds, Yunhua Zhang, Jennifer W. Macadam, Juan J. Villalba, Xin Dai

Plants, Soils, and Climate Faculty Publications

BACKGROUND

Perennial legumes cultivated under irrigation in the Mountain West USA have non‐fibrous carbohydrate (NFC) concentrations exceeding 400 g kg−1, a level commonly found in concentrate‐based ruminant diets. Our objective was to determine the influence of NFC concentration and plant secondary compounds on in vitro rumen digestion of grass, legume and forb forages compared with digestion of their isolated neutral detergent fiber (NDF) fraction. Forages were composited from ungrazed paddocks of rotationally stocked, irrigated monoculture pastures between May and August 2016, frozen in the field, freeze‐dried, and ground.

RESULTS

The maximum rate (RMax) of gas production was greater for the …

Morphological Evidence For An Oral Venom System In Caecilian Amphibians, Pedro Luiz Mailho-Fontana, Marta Maria Antoniazzi, Cesar Alexandre, Daniel Carvalho Pimenta, Juliana Mozer Sciani, Edmund D. Brodie Jr., Carlos Jared

Biology Faculty Publications

Amphibians are known for their skin rich in glands containing toxins employed in passive chemical defense against predators, different from, for example, snakes that have active chemical defense, injecting their venom into the prey. Caecilians (Amphibia, Gymnophiona) are snake-shaped animals with fossorial habits, considered one of the least known vertebrate groups. We show here that amphibian caecilians, including species from the basal groups, besides having cutaneous poisonous glands as other amphibians do, possess specific glands at the base of the teeth that produce enzymes commonly found in venoms. Our analysis of the origin of these glands shows that they originate …

Raman Spectroscopy Characterization Extracellular Vesicles From Bovine Placenta And Peripheral Blood Mononuclear Cells, Han Zhang, Ana Caroline Silva, Wei Zhang, Heloisa M. Rutigliano, Anhong Zhou

Animal, Dairy, and Veterinary Science Faculty Publications

Placenta-derived extracellular vesicles (EVs) are involved in communication between the placenta and maternal immune cells possibly leading to a modulation of maternal T-cell signaling components. The ability to identify EVs in maternal blood may lead to the development of diagnostic and treatment tools for pregnancy complications. The objective of this work was to differentiate EVs from bovine placenta (trophoblast) and peripheral blood mononuclear cells (PBMC) by a label-free, non-invasive Raman spectroscopy technique. Extracellular vesicles were isolated by ultracentrifugation. Dynamic light scattering (DLS) and scanning electron microscopy (SEM) were applied to verify the presence and the size distribution of EVs. Raman …

Investigating The Direct And Indirect Effects Of Forest Fragmentation On Plant Functional Diversity, Jenny Zambrano, Norbert J. Cordeiro, Carol Garzon-Lopez, Lauren Yeager, Claire Fortunel, Henry J. Ndangalasi, Noelle G. Beckman

Biology Faculty Publications

Ongoing habitat loss and fragmentation alter the functional diversity of forests. Generalising the magnitude of change in functional diversity of fragmented landscapes and its drivers is challenging because of the multiple scales at which landscape fragmentation takes place. Here we propose a multi-scale approach to determine whether fragmentation processes at the local and landscape scales are reducing functional diversity of trees in the East Usambara Mountains, Tanzania. We employ a structural equation modelling approach using five key plant traits (seed length, dispersal mode, shade tolerance, maximum tree height, and wood density) to better understand the functional responses of trees to …

Water Development, Consumptive Water Uses, And The Great Salt Lake, Sarah E. Null, Wayne A. Wurtsbaugh

Watershed Sciences Faculty Publications

Great Salt Lake (GSL) covers 5500 km² (2100 mi²) at its unimpacted elevation and is the eighth largest saline lake in the world. Its highly productive food web supports millions of migratory birds and the economic value of the lake is estimated at $1.5 billion US dollars in 2019. Droughts and wet cycles have caused huge fluctuations in lake level, area, and salinities, and this variation has masked anthropogenic impacts. Recent work, however, has determined that consumptive water uses in the watershed have depleted inflows by approximately 39%, with 63% used by agriculture, 11% by cities, 13% …

Velvet Longhorned Beetle (Trichoferus Campestris (Faldermann), Taryn M. Rodman, Lori R. Spears, Diane G. Alston, Cami Cannon, Kristopher Watson, Joey Caputo

All Current Publications

The velvet longhorned beetle is an invasive wood-boring pest that is native to Asia and Russia. It infests fruit, forest, and ornamental trees, as well as green and dry wood, such as timber and lumber. This fact sheet provides a description, and information on life history, plant hosts, injury symptoms, monitoring, and management.

First Detector Guide To Invasive Insects, Lori R. Spears, Diane G. Alston, Erin Brennan, Cami Cannon, Joey Caputo, Ryan Davis, Liz Herbertson, Colleen Keyes, Danielle Malesky, Darren Mcavoy, Ann M. Mull, Ricardo A. Ramirez, Taryn M. Rodman, Kristopher Watson

All Current Publications

This is a guide to help first detectors identify invasive insects, including biology, identification, and monitoring.

Gmo Products And The Food Industry: A Literature Review Of Opinions And Behaviors By U.S. Restaurants, Jake Harrison, Kenneth Bartkus

Curiosity

The health implications of genetically modified organisms (GMOs) have been the subject of considerable debate in the literature. One aspect of the debate is the apparent disconnect between what is reported in the scientific communities and what is reported in the general public. Specifically, it has been reported that while “Nearly 9 out of 10 scientists from the American Association for the Advancement of Science say GMOs are ‘generally safe’ to eat, more than half of the general public believe it is not a good idea.” This presents somewhat of a dilemma for companies, such as restaurants, who are involved …

Yingying Zheng Joins Usu Biological Engineering Department, Usu College Of Engineering

College of Engineering News

June 29, 2020 — Dr. Yingying Zheng will be joining the Biological Engineering faculty as a tenure-track assistant professor on August 1, 2020.

No More “Social Distancing” But Practice Physical Separation, Debasree Das Gupta, David W. S. Wong

Kinesiology and Health Science Faculty Publications

Though not a new term, “social distancing” exploded onto the global stage as an expression to publicize the only means currently available to control the transmission of COVID-19. This term is increasingly being adopted and translated into the vernacular to inform and guide public behavior in most, if not all, countries around the world. However, any effective global response requires direct and unambiguous communication and sharing of ideas across communities with different cultural backgrounds as well as between researchers and responders across the disciplinary spectrum. Unfortunately, social distancing is a misnomer. The current use of social distancing – separating ourselves …

A Brief Review Of Monolecty In Bees And Benefits Of A Broadened Definition, James H. Cane

All PIRU Publications

Monolecty in bees was defined a century ago for those species that consistently collect pollen only from the same single species of floral host. Even at the time, the term was considered “a curiosity” with little biological meaning. Here, I review its multiple problems and suggest that its utility would improve if we apply the term monolecty to those bees species that use a single genus (not species) of flowering host.

Western Bumble Bee: Declines In The Continental United States And Range-Wide Information Gaps, Tabitha A. Graves, William M. Janousek, Sarah M. Gaulke, Amy C. Nicholas, Douglas A. Keinath, Christine M. Bell, Syd Cannings, Richard G. Hatfield, Jennifer M. Heron, Jonathan B. Koch, Helen L. Loffland, Leif L. Richardson, Ashley T. Rohde, Jessica Rykken, James P. Strange, Et Al.

Wildland Resources Student Research

In recent decades, many bumble bee species have declined due to changes in habitat, climate, and pressures from pathogens, pesticides, and introduced species. The western bumble bee (Bombus occidentalis), once common throughout western North America, is a species of concern and will be considered for listing by the U.S. Fish and Wildlife Service (USFWS) under the Endangered Species Act (ESA). We attempt to improve alignment of data collection and research with USFWS needs to consider redundancy, resiliency, and representation in the upcoming species status assessment. We reviewed existing data and literature on B. occidentalis, highlighting information gaps …

Compensatory Recruitment, Dynamic Habitat, And Selective Gear Present Challenges To Large-Scale Invasive Species Control, Timothy E. Walsworth, Kevin Landom, Jereme Gaeta

Ecology Center Publications

Control of long‐established invasive species to aid threatened native species presents major logistic and economic challenges. Invasive common carp (Cyprinus carpio ) recently accounted for over 90% of the fish biomass in Utah Lake (Utah, USA), driving many undesired changes to ecosystem structure. Carp control efforts have removed >12,000 tons of carp from the system over 10 yr. However, the impact of recent removal efforts on carp population structure and dynamics remains unclear. We develop an integrated age‐structured population model incorporating carp harvest data with independent standardized monitoring data to evaluate population‐level consequences of the removal effort and evaluate …

Space Use And Relative Habitat Selection For Immature Green Turtles Within A Caribbean Marine Protected Area, Lucas P. Griffin, Brian J. Smith, Michael S. Cherkiss, Andrew G. Crowder, Clayton G. Pollock, Zandy Hillis-Starr, Andy J. Danylchuk, Kristen M. Hart

Wildland Resources Student Research

Background

A better understanding of sea turtle spatial ecology is critical for the continued conservation of imperiled sea turtles and their habitats. For resource managers to develop the most effective conservation strategies, it is especially important to examine how turtles use and select for habitats within their developmental foraging grounds. Here, we examine the space use and relative habitat selection of immature green turtles (Chelonia mydas) using acoustic telemetry within the marine protected area, Buck Island Reef National Monument (BIRNM), St. Croix, United States Virgin Islands.

Results

Space use by turtles was concentrated on the southern side of …

Existing Empirical Kinetic Models In Biochemical Methane Potential (Bmp) Testing, Their Selection And Numerical Solution, Yehor Pererva, Charles D. Miller, Ronald C. Sims

Biological Engineering Faculty Publications

Biochemical Methane Potential (BMP) tests are a crucial part of feasibility studies to estimate energy recovery opportunities from organic wastes and wastewater. Despite the large number of publications dedicated to BMP testing and numerous attempts to standardize procedures, there is no “one size fits all” mathematical model to describe biomethane formation kinetic precisely. Importantly, the kinetics models are utilized for treatability estimation and modeling processes for the purpose of scale-up. A numerical computation approach is a widely used method to determine model coefficients, as a replacement for the previously used linearization approach. However, it requires more information for each model …

Extreme Rainfall Events Alter The Trophic Structure In Bromeliad Tanks Across The Neotropics, Gustavo Q. Romero, Nicholas A. C. Marino, A. Andrew M. Macdonald, Régis Céréghino, M. Kurtis Trzcinski, Dimaris Acosta Mercado, Céline Leroy, Bruno Corbara, Vinicius F. Farjalla, Ignacio M. Barberis, Olivier Dézerald, Edd Hammill, Trisha B. Atwood, Gustavo C. O. Piccoli, Fabiola Ospina Bautista, Et Al.

Ecology Center Publications

Changes in global and regional precipitation regimes are among the most pervasive components of climate change. Intensification of rainfall cycles, ranging from frequent downpours to severe droughts, could cause widespread, but largely unknown, alterations to trophic structure and ecosystem function. We conducted multi-site coordinated experiments to show how variation in the quantity and evenness of rainfall modulates trophic structure in 210 natural freshwater microcosms (tank bromeliads) across Central and South America (18°N to 29°S). The biomass of smaller organisms (detritivores) was higher under more stable hydrological conditions. Conversely, the biomass of predators was highest when rainfall was uneven, resulting in …

Effects Of Pyric Herbivory On Prairie-Chicken (Tympanuchus Spp) Habitat, Heath D. Starns, Samuel D. Fuhlendorf, Robert D. Elmore, Dirac Twidwell, Eric T. Thacker, Torre J. Hovick, Barney Luttbeg

Wildland Resources Faculty Publications

The reduction and simplification of grasslands has led to the decline of numerous species of grassland fauna, particularly grassland-obligate birds. Prairie-chickens (Tympanuchus spp.) are an example of obligate grassland birds that have declined throughout most of their distribution and are species of conservation concern. Pyric herbivory has been suggested as a land management strategy for enhancing prairie-chicken habitat and stabilizing declining population trends. We assessed differences in vegetation structure created by pyric herbivory compared to fire-only treatments to determine whether pyric herbivory increased habitat heterogeneity for prairie-chickens, spatially or temporally. Our study was performed at four sites in the …

Developing A Mobile Application‐Based Particle Image Velocimetry Tool For Enhanced Teaching And Learning In Fluid Mechanics: A Design‐Based Research Approach, Angela L. Minichiello, David Armijo, Sarbajit Mukherjee, Lori M. Caldwell, Vladimir Kulyukin, Tadd T. Truscott, Jack Elliott, Aditya Bhouraskar

Engineering Education Faculty Publications

A robust and intuitive understanding of fluid mechanics—the applied science of fluid motion—is foundational within many engineering disciplines, including aerospace, chemical, civil, mechanical, naval, and ocean engineering. In‐depth knowledge of fluid mechanics is critical to safe and economical design of engineering applications employed globally everyday, such as automobiles, aircraft, and sea craft, and to meeting global 21st century engineering challenges, such as developing renewable energy sources, providing access to clean water, managing the environmental nitrogen cycle, and improving urban infrastructure. Despite the fundamental nature of fluid mechanics within the broader undergraduate engineering curriculum, students often characterize courses in fluid mechanics …

Learning From Engineers To Develop A Model Of Disciplinary Literacy In Engineering (Year 3), Theresa Green, Angela L. Minichiello, Amy Wilson-Lopez, Christina Marie Hartman, Jared W. Garlick

Engineering Education Faculty Publications

Purpose This paper will the describe the overall project goals, activities, preliminary findings, and future work on this project. The purpose of this project is to develop a model of Disciplinary Literacy Instruction (DLI) in engineering that can be used in both K-12 and undergraduate engineering settings. This model of DLI will be informed by knowledge about the ways practicing engineers across four disciplines of engineering (i.e., electrical/computer, mechanical/aerospace, civil/environmental, and chemical/biological) read, interpret, evaluate, and generate texts in the context of their work environment. This information will be translated into a model of DLI in engineering to teach students …

Investigating The Dynamics Of Elk Population Size And Body Mass In A Seasonal Environment Using A Mechanistic Integral Projection Model, Shelly Lachish, Ellen E. Brandell, Meggan E. Craft, Andrew P. Dobson, Peter J. Hudson, Daniel R. Macnulty, Tim Coulson

Wildland Resources Faculty Publications

Environmentally mediated changes in body size often underlie population responses to environmental change, yet this is not a universal phenomenon. Understanding when phenotypic change underlies population responses to environmental change is important for obtaining insights and robust predictions of population dynamics in a changing world. We develop a dynamic integral projection model that mechanistically links environmental conditions to demographic rates and phenotypic traits (body size) via changes in resource availability and individual energetics. We apply the model to the northern Yellowstone elk population and explore population responses to changing patterns of seasonality, incorporating the interdependence of growth, demography, and density-dependent …

The Fire And Tree Mortality Database, For Empirical Modeling Of Individual Tree Mortality After Fire, C. Alina Cansler, Sharon M. Hood, J. Morgan Varner, Phillip J. Van Mantgem, Michelle C. Agne, Robert A. Andrus, Matthew P. Ayres, Bruce D. Ayres, Jonathan D. Bakker, Michael A. Battaglia, Barbara J. Bentz, Carolyn R. Breece, James K. Brown, Daniel R. Cluck, Tom W. Coleman, R. Gregory Corace Iii, W. Wallace Covington, Douglas S. Cram, James B. Cronan, Joseph E. Crouse, Adrian J. Das, Ryan S. Davis, Et Al.

Biology Faculty Publications

Wildland fires have a multitude of ecological effects in forests, woodlands, and savannas across the globe. A major focus of past research has been on tree mortality from fire, as trees provide a vast range of biological services. We assembled a database of individual-tree records from prescribed fires and wildfires in the United States. The Fire and Tree Mortality (FTM) database includes records from 164,293 individual trees with records of fire injury (crown scorch, bole char, etc.), tree diameter, and either mortality or top-kill up to ten years post-fire. Data span 142 species and 62 genera, from 409 fires occurring …

“How Well Does Your Structural Equation Model Fit Your Data?”: Is Marcoulides And Yuan’S Equivalence Test The Answer?, James Peugh, David F. Feldon

Instructional Technology and Learning Sciences Faculty Publications

Structural equation modeling is an ideal data analytical tool for testing complex relationships among many analytical variables. It can simultaneously test multiple mediating and moderating relationships, estimate latent variables on the basis of related measures, and address practical issues such as nonnormality and missing data. To test the extent to which a hypothesized model provides an appropriate characterization of the collective relationships among its variables, researchers must assess the “fit” between the model and the sample’s data. However, interpreting estimates of model fit is a problematic process. The traditional inferential test of model fit, the chi-square test, is biased due …

Long-Term Soil Productivity Study: 25-Year Vegetation Response To Varying Degrees Of Disturbance In Aspen-Dominated Forest Spanning The Upper Lake States, Miranda T. Curzon, Brian J. Palik, Anthony W. D'Amato, Julia Schwager

Aspen Bibliography

Installations of the Long-Term Soil Productivity Study were established in northern Minnesota and Michigan at the Chippewa, Ottawa, and Huron-Manistee National Forests (NFs) in the early 1990s and have since provided a wealth of data for assessing the response of aspen-dominated forest ecosystems to varying levels of organic matter removal and soil compaction. An assessment of 25-year standing woody biomass indicates that neither whole-tree harvest nor whole-tree harvest combined with forest floor removal reduced forest productivity on silt-loam soils compared with conventional, stem-only harvest; however, moderate and heavy compaction did negatively impact aspen biomass and stem densities. In contrast, whole-tree …

Plastic Rain In Protected Areas Of The United States, Janice Brahney, Margaret Hallerud, Eric Heim, Maura Hahnenberger, Suja Sukumaran

Watershed Sciences Faculty Publications

Eleven billion metric tons of plastic are projected to accumulate in the environment by 2025. Because plastics are persistent, they fragment into pieces that are susceptible to wind entrainment. Using high-resolution spatial and temporal data, we tested whether plastics deposited in wet versus dry conditions have distinct atmospheric life histories. Further, we report on the rates and sources of deposition to remote U.S. conservation areas. We show that urban centers and resuspension from soils or water are principal sources for wet-deposited plastics. By contrast, plastics deposited under dry conditions were smaller in size, and the rates of deposition were related …

How Many Tree Species Of Birch Are In Alaska? Implications For Wetland Designations, Carol A. Rowe, Robert W. Lichvar, Paul G. Wolf

Biology Faculty Publications

Wetland areas are critical habitats, especially in northern regions of North America. Wetland classifications are based on several factors, including the presence of certain plant species and assemblages of species, of which trees play a significant role. Here we examined wetland species of birch (Betula) in North America, with a focus on Alaska, and the use of birche tree species in wetland delineation. We sampled over 200 trees from sites, including Alaska, Alberta, Minnesota, and New Hampshire. We used genetic data from over 3000 loci detected by restriction site associated DNA analysis. We used an indirect estimate of …

Natural Categorization: Electrophysiological Responses To Viewing Natural Versus Built Environments, Salif Mahamane, Nick Wan, Alexis Porter, Allison S. Hancock, Justin Campbell, M. S. Lyons, Kerry Jordan

Psychology Faculty Publications

Environments are unique in terms of structural composition and evoked human experience. Previous studies suggest that natural compared to built environments may increase positive emotions. Humans in natural environments also demonstrate greater performance on attention-based tasks. Few studies have investigated cortical mechanisms underlying these phenomena or probed these differences from a neural perspective. Using a temporally sensitive electrophysiological approach, we employ an event-related, implicit passive viewing task to demonstrate that in humans, a greater late positive potential (LPP) occurs with exposure to built than natural environments, resulting in a faster return of activation to pre-stimulus baseline levels when viewing natural …

Solution Blow Spinning Of Polyvinylidene Fluoride Based Fibers For Energy Harvesting Applications: A Review, Rasheed Atif, Jibran Khaliq, Madeleine Combrinck, Ahmed H. Hassanin, Nader Shehata, Eman Elnabawy, Islam Shyha

Biology Faculty Publications

Polyvinylidene fluoride (PVDF)-based piezoelectric materials (PEMs) have found extensive applications in energy harvesting which are being extended consistently to diverse fields requiring strenuous service conditions. Hence, there is a pressing need to mass produce PVDF-based PEMs with the highest possible energy harvesting ability under a given set of conditions. To achieve high yield and efficiency, solution blow spinning (SBS) technique is attracting a lot of interest due to its operational simplicity and high throughput. SBS is arguably still in its infancy when the objective is to mass produce high efficiency PVDF-based PEMs. Therefore, a deeper understanding of the critical parameters …