Digital Commons Network^™

Using Anthropogenic Risks To Inform Salmonid Conservation At The Landscape Scale, Andrew W. Witt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The expansion and industrialization of humanity has caused many unforeseen consequences to the natural world. Due to the importance of freshwater for people, rivers have been particularly altered to meet human needs, often at the expense of the natural world. Supplying water for farms, industries, and cities has reshaped the natural state of rivers by altering river paths, chemistry, and species compositions. These changes have harmed many species that prospered before widespread human alterations, including the native trout and salmon of western North America. As human populations continue to grow, new threats will surface for rivers, and the trout and …

Understanding Plant Secondary Metabolites; Above And Below Ground, Andrea K. Clemensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Plants naturally produce primary and secondary metabolites. Primary metabolites are directly involved with plant growth and metabolic function. Plant secondary metabolites (PSM) were once thought of as metabolic waste products, and more recently viewed as toxins to herbivores. However, ongoing research shows that PSM are beneficial to herbivores at low doses, and PSM aid plants by attracting pollinators, recovering from injury, protecting from ultraviolet radiation, increasing drought tolerance, and aid in defense against pathogens, diseases, and herbivores. Plant secondary metabolites also influence soil nutrient cycling, and can increase the sustainability of agroecosystems. Endophyte-infected tall fescue (Festuca arundinacea Schreb.), which …

Impact Of Basal Diet On Obesity Phenotype Of Recipient Mice Following Fecal Microbiome Transfer From Obese Or Lean Human Donors, Daphne Michelle Rodriguez Jimenez

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The composition of the gut microbiome can be affected by environmental factors, such as diet. The Western dietary pattern is associated with microbiome dysbiosis and adverse health outcomes, including obesity and metabolic disorders. The objective of this study was to examine the effect of gut microbiota from lean or obese human donors on metabolism and weight gain in recipient mice fed one of three basal diets: 1) the standard AIN93G diet, which promotes rodent health; 2) the total Western diet (TWD), which mimics the American dietary pattern and promotes inflammation-associated colorectal carcinogenesis; and 3) a 45% high fat diet-induced obesity …

What Resources Do School Librarians Use When Developing New Programming: A Qualitative Inquiry, Jennifer Hansen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For this qualitative analysis, I analyzed observational and interview data from two middle school librarians setting up new active learning programs. I focused my research by analyzing the preliminary data gathered in field notes from observations at the different library sites to determine what programming resources the librarians were using. A secondary consideration was drawn from preliminary evidence, which indicated the librarians turned to many on and offline information resources, including the social curating site Pinterest. After gathering initial data from observations, I gathered additional data from two interviews: the first interview focused on where the librarians find information and …

Phenotypic Association Between Lactose And Other Milk Components In Western Us Dairy Herds And Japan, Takuji Asami

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Lactose in milk has relatively low variation regardless of season, breed, or country. The study of lactose concentration and correlation among other milk components is limited. Furthermore, dairy farmers have limited access to the lactose data and are not familiar with it. This study was conducted to: 1) investigate the phenotypic correlation between lactose and other milk components; and 2) determine the importance of lactose for dairy herds.

Monthly DHIA records from Utah (DHIA), Dairy Herd Performance Test (DHTP) records from Ibaraki, Japan, and California herd average data (CHAD) covering 27 states were used to analyze the relationships between milk …

Relationships Among Invasive Coqui Frogs, The Small Indian Mongoose And Rat Species In Hawaii, Shane A. Hill

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Non-native species are increasing globally, and with this increase, it is likely that there will be new, unique relationships found among non-natives as well as additional impacts on native species. Rats and mongooses have been introduced to islands throughout the world where they impact native species, including birds, reptiles, and amphibians. The coqui frog was introduced to Hawaii in the 1980’s, where there were already abundant rat and mongoose populations. Previous research suggests that the high densities of coqui frogs may provide enough of a new food source for mongooses and rats that their populations would grow larger than they …

Assessment Of Microchimerism Following Somatic Cell Nuclear Transfer And Natural Pregnancies In Goats (Capra Aegagrus Hircus), Kirsten Karen Gash

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Somatic cell nuclear transfer (SCNT) is a powerful tool for production of transgenic animals for various biomedical and agricultural applications. For instance, our group is using SCNT to produce transgenic goats to study the role of cardiac fibrosis in initiation and progression of atrial fibrillation. There is a possibility of cell transfer from a transgenic fetus to its non-transgenic surrogate mother, known as fetal microchimerism; from a transgenic mother to non-transgenic fetus, maternal microchimerism and from a transgenic twin to non-transgenic twin in utero. Initially, we have assessed the presence of fetal microchimerism in tissue samples from non-transgenic surrogates …

Investing In Agribusiness Stocks And Farmland: A Boom Or Bust Analysis, Asif Rasool

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As intelligent investors, we should always consider holding assets of different classes. Investing in assets from various classes allows us to minimize portfolio risks. In this paper, we recommend a better way of devoting money, especially for the investors who are interested in the agricultural sector. Historically fund managers use Markowitz framework to create financial portfolios. However, that framework has some fundamental limitations. A copula is a modern approach that counters the disadvantages of the Markowitz framework, to deal with portfolio construction. Copula also identifies the downside risk (the maximum amount of money you can lose) of a portfolio.

We …

Gene-Environment Interaction: Brain-Derived Neurotrophic Factor (Bdnf) As A Moderating Factor For The Effects Of Exercise And Diet On Cognitive And Mental Health: The Cache County Study On Memory In Aging, Chelsea L. Sanders

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Cache County Study on Memory in Aging, funded by the National Institute on Aging, studied longitudinal changes in memory and aging over 12 years’ follow-up in a population-based sample of 5,092 older adults in semirural Cache County, UT. Among the extensive interview procedures, researchers collected information regarding the participants’ demographics, health, genetic factors, diet, physical activity, and cognitive abilities. This study has allowed researchers to investigate how genetic and modifiable lifestyle factors interact to predict health, cognitive function, and psychological wellbeing in older adults.

Diet and exercise are important lifestyle factors in maintaining cognitive health and psychological wellbeing throughout …

Effect Of Tannin-Containing Legume Hays On Enteric Methane Emissions And Nitrogen Partitioning In Beef Cattle, Elizabeth K. Stewart

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cattle are responsible for greenhouse gas emissions such as carbon dioxide, methane and nitrous oxide. In particular, the cow-calf phase of production accounts for approximately 80 percent of the total beef production system greenhouse gas emissions. Tannins are chemical compounds found in certain forages and they have the potential to help reduce these negative environmental impacts. Thus, given that the cow-calf phase often relies on feeding hay, feeding tannin-containing hays may represent a significant mitigation practice.

With my MS program, I sought to explore whether tannin-containing hays fed to mother cows and heifers influence methane and nitrogen emissions relative to …

Patterns Of Threatened Vertebrates Based On Trophic Level, Diet, And Biogeography, Shaley A. Valentine

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Humans have indirectly and directly contributed to the extinction of over 500 species within the past 500 years, a rate far higher than we have seen in the past. The high extinction rate and the fact that 18% of vertebrates may become extinct within the next century have pushed Earth into a biodiversity crisis. Understanding what makes species more at risk of extinction is needed to protect Earth’s biodiversity.

Generally, it is expected that predators have greater extinction risk than omnivores and herbivores because predators are larger in body size, depend on other animal species for food, need large home …

Planning For Active Transportation In The Western United States: An Alternative Future For Cache Valley, Utah, Stephanie A. Tomlin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mobility in the western U.S. is defined primarily by the private automobile. Since the conclusion of WWII, the private automobile has become readily available to the public, and as a result, has heavily influenced the design of our modern cities in the west. In recent years the connections between high motor vehicle use and rising obesity rates, crumbling road infrastructure, and deteriorating air quality have caused city officials to reexamine the transportation systems of the west. One solution advocates, city officials, and planning professionals have begun examining is active transportation (walking, cycling, and public transit). Research suggests that a robust …

A Comparison Of The Effects Of Enhanced Hands-On Intervention Versus Textbook Interventions To Understand Student Misconceptions In Particle Dynamics, Gang Liu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The present dissertation research examined the effects of applying the enhanced hands-on intervention to reveal and correct student misunderstandings of the concepts in engineering dynamics, especially particle dynamics. We involved 36 student volunteers for three different research topics. The student participants were divided into two groups in each research topic: enhanced hands-on intervention and pure textbook groups. An interview and intervention was conducted with each participant individually.

The author introduced the “Think-Aloud” method with two kinds of interventions mentioned above. The participants were required to speak out their thought process loud as they worked on the two sets of assessment …

Biological Condition And Stressors Of Blm Wadeable Streams In Northeastern California And Northwestern Nevada, Nicole Cappuccio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Taxpayer dollars can be used more efficiently by land management agencies to monitor streams if agency-wide monitoring protocols are adopted. To address this issue, the Bureau of Land Management (BLM) developed the National Aquatic Monitoring Framework (NAMF) to implement standardized assessments of stream condition and trend in the Western United States. As one of the first applications of the NAMF I sought to develop and apply an analytical framework to determine the biological condition of streams, extent of instream stressors and their impact on biological condition, and anthropogenic sources of stressors in Northeast California and Northwest Nevada over three years …

U.S. Consumers’ Perception, Intention, And Purchase Behavior Of Grass-Fed Beef, Elizabeth K. Crandall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this research study was to compile regional profiles of the consumers who intend to consume grass-fed beef in the U.S. and to create marketing strategies that would assist producers in marketing their product to consumers. The researcher sent an online survey to a panel of 484 consumers across the U.S. to learn about their perceptions of and intention to purchase grass-fed beef.

Respondents had a weak, positive attitude toward purchasing grass-fed beef but had low knowledge of production practices. These consumers had a desire to eat healthier; however, they wanted meat that was priced right and had …

Pharmacologically Induced Meiosis Apomeiosis Interconversions In Boechera, Arabidopsis And Vigna, Lei Gao

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Apomixis is a clonal propagation method that produces offspring identical to the mother plant. With this feature, superior traits could be maintained over generations. However, our knowledge about apomixis is limited. In this study, we analyzed several apomictic Boechera embryologically to learn the details of apomixis. Meanwhile, we designed chemical treatments to successfully induce sex in apomictic plants and apomixis in sexual plants. Our experiments suggest that sex and apomixis coexist in plants and that sexual and apomictic reproduction are switchable by treating with specific chemicals.

Development And Characterization Of Reporter-Expressing Zika Viruses, Michael E. Woolley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In recent years, Zika virus (ZIKV) has garnered worldwide attention due to its epidemic spread throughout the Americas and due to the newly recognized link between ZIKV infection and neurological diseases, including microcephaly and Guillain-Barré syndrome. ZIKV is a mosquito-borne member of the genus Flavivirus, which includes the other prominent human pathogens Japanese encephalitis virus, West Nile virus, dengue virus, and yellow fever virus. Many questions about the biology of ZIKV and how it causes disease remain unanswered. Furthermore, there currently are no vaccines or licensed antiviral drugs available to treat ZIKV infection. The goal of this study was to …

Land Cover And Use Change In Utah: A Comparison Of Field- Vs. Aerial Image-Based Observations, Jennifer Lynn Bakken

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Image-based Change Estimation program (ICE) was developed by the US Forest Service Forest Inventory & Analysis (FIA) program and the Geospatial Technology Applications Center in response to the 2014 Farm Bill calling for more timely and accurate estimates of land cover and use change. ICE monitors change throughout the US on a state by state basis by assessing each FIA plot using high resolution imagery from two dates in time. In the western US, FIA measures 10% of the plots each year to report on status, trends, and sustainability of our Nation’s forests. However, this 10 year cycle misses …

Design Scaffolding For Computational Making In The Visual Programming Tool Aris, Whitney E. Lewis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In this thesis, I explore how design scaffolds, or (i.e., intellectual supports) can assist learners engaging with computational making processes. Computational making combines programming with artifact production. Due to the complexity of tasks involved in computational making, there is an increasing need to explore and develop support systems for learners engaging with computational making.

With $3,000 funding from Utah State University’s College of Education and Human Services, an undergraduate researcher and I, who both have experience with youth and computational making research, explored how design scaffolds impact youth engaging with computational making processes. To do so, we held a workshop …

Effects Of Livestock Grazing Management Practices On Greater Sage-Grouse Nest And Female Survival, Seth J. Dettenmaier

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The decline in greater sage-grouse (Centrocercus urophasianus; sage-grouse) populations across western North America has been primarily attributed to loss and fragmentation of their sagebrush (Artemisia spp.) habitats. This habitat loss is largely the result of increased human activities, with grazing by domestic livestock as the most predominant land use across the sagebrush ecosystem in North America. The goal of my research was to increase our understanding of the effects of livestock on sage-grouse populations. I reviewed the peer-reviewed literature for all published studies that reported potential effects of grazing on grouse species worldwide. I found that there …

Development And Fitness Consequences Of Onshore Behavior Among Polar Bears In The Southern Beaufort Sea Subpopulation, Kate M. Lillie

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Polar bears (Ursus maritimus) are experiencing rapid and substantial changes to their environment due to global climate change. Polar bears of the southern Beaufort Sea (SB) have historically spent most of the year on the sea ice. However, recent reports from Alaska indicate that the proportion of the SB subpopulation observed onshore during late summer and early fall has increased considerably. Previous research suggests that the number of polar bears onshore is linked to sea ice conditions and the availability of subsistence-harvested whale carcasses, which are referred to as bone piles. My objectives were to determine the development …

The Effects Of Cultural Diplomacy On Public Perception In Asia, Joseph R. Johnson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Many states use their cultures to promote a positive image of themselves abroad. Some scholars argue that this can provide states with international benefits. However, other scholars point to cases where a foreign state’s cultural influence has led to nationalist backlashes and negative public reactions. In this paper, I examine how two common types of cultural diplomacy programs can influence how states are perceived abroad.

I first look at the promotion of pop culture products, such as books, movies, and music. Using survey data from 12 Asian countries, I find that an increase in cultural product imports from Japan, South …

Contextual Factors In The Identity Development Of Native American And Latinx Undergraduates In Stem Fields, Angela Marie Enno

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study includes two papers that aimed to provide insights into the experiences of high-achieving Latinx and Native American college students studying science. We wanted to better understand factors that influence these students’ ability to develop a sense of identity that weaves together their hoped-for careers as scientists as well as their cultural identities. We looked at how they feel about working with mentors in science fields who were like them in a variety of ways. We found that many students (especially those with a stronger sense of cultural identity) valued working with mentors who were similar to them in …

Evaluation Of Therapeutics For An Enterovirus 71 Infection In An Ag129 Mouse Model, Christopher Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Discovered in 1969 in California, enterovirus 71 (EV-71) is a serious cause of disease in young children. It is one of the major causative agents of hand, food, and mouth disease (HFMD), and can produce neurological complications, such as meningitis, encephalitis, and an acute flaccid paralysis. For serious cases, the fatality rate can be up to 26%, almost exclusively in young children.

While the virus was initially discovered in the United States, it was soon detected in the Eastern hemisphere, causing outbreaks in Europe and Asia. The largest outbreak occurred in Taiwan in 2008, with approximately 490,000 cases and 128 …

A Non-Recoverable Hybridoma Limits The Production Of Monoclonal Antibodies Against Bovine Trophoblast Non-Classical Nc3*00101 Protein, Parveen Parasar, Amanda Wilhelm, William C. Davis, Kenneth L. White, Christopher J. Davies

Animal, Dairy, and Veterinary Science Faculty Publications

The non-classical MHC class I (MHC-Ib) proteins are important modulators of immune system during pregnancy favoring survival of the fetus. Contrary to ubiquitously expressed classical MHC-I proteins, MHC-Ib proteins are oligomorphic, and expressed in specific cell/tissue types thus minimizing maternal immune-mediated rejection of fetal-allograft and a successful pregnancy. A unique characteristic of MHC-Ib glycoproteins is expression of surface and soluble isoforms due to alternative splicing phenomenon. Bovine fetal trophoblast cells, during the third trimester of pregnancy, express non-classical bovine leukocyte antigen class Ib (BoLA-Ib) antigens. BoLA-NC3*00101, is a non-classical class I allele from cattle AH11 …

Brown Marmorated Stink Bug Management For Fruits And Vegetables In Utah, Lori R. Spears, Diane G. Alston, Marion Murray

All Current Publications

This fact sheet describes brown marmorated stink bug (BMSB), an invasive agricultural and nuisance pest from eastern Asia. It includes information on how to identify, feeding injury, monitoring, management, and chemical control.

Rangeland Weed Control And Pasture Rejuvenation, Linden Greenhalgh, Jerry Caldwell, Burt Staples

All Current Publications

The purpose of this fact sheet is to show how rangeland pastures can be rejuvenated through weed control, fertilization, reseeding, and improved management practices.

Utilizing Epds As A Selection Tool In Beef Cattle, Matthew D. Garcia, Jim Keyes, Joshua Dallin

All Current Publications

This fact sheet provides the basics of EPDs, how they are generated, EPDs and crossbreeding, and accuracies,

Fresh And Easy: How To Make Pureed Baby Food, Shayla Shearer, Mateja R. Savoie-Roskos, Carrie Durward

All Current Publications

This fact sheet tells how to safely prepare and store pureed baby food so it is nutritious, convenient and less expensive than store bought baby food.

Proper Care And Management Of Common Health Concerns With 4-H Steers And Heifers, Karah Nay, Matthew D. Garcia, Kerry A. Rood, Chelsea Walker

All Current Publications

The purpose of this fact sheet is to give youth and their parents a basic guide of what signs and symptoms to watch for to prevent illness or death. It includes instructions on how to take vitals, how to assist the veterinarian when called, the compiling of materials for a first aid kit, proper antibiotic administration, vaccinations, and preventive practices that the youth can implement while caring for their animal.