Digital Commons Network^™

Increasing Marine Debris Awareness Through Public Education And Analyzing Fish For Microplastic And Pollutant Contamination, Stephanie R. Dubois

Theses and Dissertations

Marine debris is any persistent solid material that is manmade and then disposed of into the world’s oceans. Outreach and education was used in combination with biological research using an indicator fish species to raise awareness about the impacts of marine debris and encourage change in behavior to reduce marine debris. Pre and post surveys were administered during marine debris education tours for K-12 students at the Coastal Studies Lab on South Padre Island, Texas to determine change in knowledge and behavior regarding marine debris. Pinfish were collected from Laguna Madre and stomachs and livers removed for microplastics content and …

Investigating The Application Of Multibeam Sonar And Remotely Operated Vehicles In Fish Population Monitoring On Artificial Reefs, Robert Figueroa-Downing

Theses and Dissertations

Implementation of ROVs and multibeam imaging sonar in fisheries research has the potential to improve the accuracy and efficiency of current monitoring practices. This study aimed to 1) compare ROV video and diver abundance estimates; 2) evaluate fish length measurement accuracy from sonar; 3) investigate key differentiating sonar characteristics. Results indicate: 1) Diver surveys captured greater diversity of species; survey methods were comparable with regards to conspicuous species (r = 0.089, p = 0.074); 2) Length measurements from multibeam imaging sonar had high predictive power (Rho = 0.998; p < 0.001) of actual standard lengths and; 3) variations between samples were largely due to swim bladder echo, relative position of the target fish, and schooling characteristics. We conclude that 1) ROVs are less apt at observing cryptic species; 2) The Blueview P900-90 sonar can accurately measure fish length; and 3) swim bladder morphology plays an important role in fish identification.

Fractals, Randomization, Optimal Constructions, And Replication In Algorithmic Self-Assembly, Cameron Chalk

Theses and Dissertations

The problem of the strict self-assembly of infinite fractals within tile self-assembly is considered. In particular, tile assembly algorithms are provided for the assembly of the discrete Sierpinski triangle and the discrete Sierpinski carpet.

The robust random number generation problem in the abstract tile assembly model is introduced. First, it is shown this is possible for a robust fair coin flip within the aTAM, and that such systems guarantee a worst case O(1) space usage. This primary construction is accompanied with variants that show trade-offs in space complexity, initial seed size, temperature, tile complexity, bias, and extensibility.

This work …

Formation Of Lifepo4-Pan Submicron Fibers Via Forcespinning ® For Battery Cathode Applications, Ashlee L. Lopez

Theses and Dissertations

LiFePO4/C composite nanofibers were prepared by utilizing Forcespinning® technology and calcination approaches. Polyacrylonitrile (PAN) was dissolved in N, N-dimethylformamide (DMF) to produce the media that allotted nanofiber formation via Forcespinning® and also served as the carbon source. A LiFePO4 solution was synthesized separately in DMF, which served as the precursor. The separately prepared PAN/DMF and LiFePO4/DMF solutions were then mixed at different weight percent’s (wt.%) prior to being subjected to Forcespinning ®. Elemental analysis of the LiFePO4/PAN nanofibers was characterized by energy dispersive spectroscopy (EDS) and x-ray photoelectron spectroscopy (XPS). The study of the surface morphology was conducted by scanning …

The Rider (2017-04-24), Jesus Sanchez

The Rider Archives

Vol.2 No.27

Quantum Correlation Measurements In Interferometric Gravitational-Wave Detectors, D. V. Martynov, V. V. Frolov, S. Kandhasamy, K. Izumi, H. Miao, N. Mavalvala, E. D. Hall, R. Lanza, Volker Quetschke, Guillermo Valdes

Physics & Astronomy Faculty Publications

Quantum fluctuations in the phase and amplitude quadratures of light set limitations on the sensitivity of modern optical instruments. The sensitivity of the interferometric gravitational-wave detectors, such as the Advanced Laser Interferometer Gravitational-Wave Observatory (LIGO), is limited by quantum shot noise, quantum radiation pressure noise, and a set of classical noises. We show how the quantum properties of light can be used to distinguish these noises using correlation techniques. Particularly, in the first part of the paper we show estimations of the coating thermal noise and gas phase noise, hidden below the quantum shot noise in the Advanced LIGO sensitivity …

Search For Continuous Gravitational Waves From Neutron Stars In Globular Cluster Ngc 6544, B. P. Abbott, R. Abbott, T. D. Abbott, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov

Physics & Astronomy Faculty Publications

We describe a directed search for continuous gravitational waves in data from the sixth initial LIGO science run. The target was the nearby globular cluster NGC 6544 at a distance of ≈2.7 kpc. The search covered a broad band of frequencies along with first and second frequency derivatives for a fixed sky position. The search coherently integrated data from the two LIGO interferometers over a time span of 9.2 days using the matched-filtering F-statistic. We found no gravitational-wave signals and set 95% confidence upper limits as stringent as 6.0×10-25 on intrinsic strain and 8.5×10-6 on fiducial ellipticity. These values beat …

The Rider (2017-04-17), Jesus Sanchez

The Rider Archives

Vol.2 No.26

Effects Of Waveform Model Systematics On The Interpretation Of Gw150914, B. P. Abbott, T. D. Abbott, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Joseph D. Romano

Physics & Astronomy Faculty Publications

Parameter estimates of GW150914 were obtained using Bayesian inference, based on three semi-analytic waveform models for binary black hole coalescences. These waveform models differ from each other in their treatment of black hole spins, and all three models make some simplifying assumptions, notably to neglect sub-dominant waveform harmonic modes and orbital eccentricity. Furthermore, while the models are calibrated to agree with waveforms obtained by full numerical solutions of Einstein's equations, any such calibration is accurate only to some non-zero tolerance and is limited by the accuracy of the underlying phenomenology, availability, quality, and parameter-space coverage of numerical simulations. This paper …

Pulsar Timing Array Based Search For Supermassive Black Hole Binaries In The Square Kilometer Array Era, Yan Wang, Soumya D. Mohanty

Physics & Astronomy Faculty Publications

The advent of next generation radio telescope facilities, such as the Square Kilometer Array (SKA), will usher in an era where a pulsar timing array (PTA) based search for gravitational waves (GWs) will be able to use hundreds of well timed millisecond pulsars rather than the few dozens in existing PTAs. A realistic assessment of the performance of such an extremely large PTA must take into account the data analysis challenge posed by an exponential increase in the parameter space volume due to the large number of so-called pulsar phase parameters. We address this problem and present such an assessment …

First Demonstration Of Electrostatic Damping Of Parametric Instability At Advanced Ligo, Carl Blair, Slawek Gras, Richard Abbott, Stuart Aston, Joseph Betzwieser, David Blair, Ryan Derosa, Matthew Evans, Valera Frolov

Physics & Astronomy Faculty Publications

Interferometric gravitational wave detectors operate with high optical power in their arms in order to achieve high shot-noise limited strain sensitivity. A significant limitation to increasing the optical power is the phenomenon of three-mode parametric instabilities, in which the laser field in the arm cavities is scattered into higher-order optical modes by acoustic modes of the cavity mirrors. The optical modes can further drive the acoustic modes via radiation pressure, potentially producing an exponential buildup. One proposed technique to stabilize parametric instability is active damping of acoustic modes. We report here the first demonstration of damping a parametrically unstable mode …

First Search For Gravitational Waves From Known Pulsars With Advanced Ligo, B. P. Abbott, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Marc E. Normandin, Volker Quetschke, Malik Rakhmanov, Robert Stone, Darkhan Tuyenbayev, Guillermo Valdes

Physics & Astronomy Faculty Publications

We present the result of searches for gravitational waves from 200 pulsars using data from the first observing run of the Advanced LIGO detectors. We find no significant evidence for a gravitational-wave signal from any of these pulsars, but we are able to set the most constraining upper limits yet on their gravitational-wave amplitudes and ellipticities. For eight of these pulsars, our upper limits give bounds that are improvements over the indirect spin-down limit values. For another 32, we are within a factor of 10 of the spin-down limit, and it is likely that some of these will be reachable …

Detection Methods For Stochastic Gravitational-Wave Backgrounds: A Unified Treatment, Joseph D. Romano, Neil J. Cornish

Physics & Astronomy Faculty Publications

We review detection methods that are currently in use or have been proposed to search for a stochastic background of gravitational radiation. We consider both Bayesian and frequentist searches using ground-based and space-based laser interferometers, spacecraft Doppler tracking, and pulsar timing arrays; and we allow for anisotropy, non-Gaussianity, and non-standard polarization states. Our focus is on relevant data analysis issues, and not on the particular astrophysical or early Universe sources that might give rise to such backgrounds. We provide a unified treatment of these searches at the level of detector response functions, detection sensitivity curves, and, more generally, at the …

Understanding The Patterns Of Distribution And Abundance Of Lyme Disease Carrying Ticks And Their Hosts, Julio Ruiz

Honors Theses

Lyme disease is caused by the bacteria Borrelia burgodorferi and spreads to their hosts by the bites of infected Ixodes scapularis ticks. In the United States, Lyme disease is typically found in the northeast but in recent years the disease has begun to be found further south and west than previously before. Yet, today, little information can be found about the patters of distribution and abundance of ticks and their host. The main goal of this research work was to expand the knowledge of the abundance and distribution of ticks and host. Based on tick collection data obtained from Maikis …

Student Loans And Their Effect On Parental Views Of Education Financing, Jose Angel Nunez

Honors Theses

Using the 2012 wave National Longitudinal Survey of Youth 1979, this study examines the effect that parents' student debt have on their decision to use tax advantage education vehicles to save for their children's college. We also examine parental decisions on obtaining student loans on behalf of their children. The results show that parents who report having student loans are 61% less likely than those that report no student loan debt to use tax-advantaged education saving vehicles. However, we find no difference in the effect of having student loans on the decision to obtain debt to fund their children's college …

Utrgv Commencement – Spring 2017, The University Of Texas Rio Grande Valley

UTRGV Commencement Programs

No abstract provided.

Fast Genome-Wide Qtl Association Mapping On Pedigree And Population Data, Hua Zhou, John Blangero, Thomas D. Dyer, Kei-Hang K. Chan, Kenneth Lange, Eric M. Sobel

School of Medicine Publications

Since most analysis software for genome-wide association studies (GWAS) currently exploit only unrelated individuals, there is a need for efficient applications that can handle general pedigree data or mixtures of both population and pedigree data. Even datasets thought to consist of only unrelated individuals may include cryptic relationships that can lead to false positives if not discovered and controlled for. In addition, family designs possess compelling advantages. They are better equipped to detect rare variants, control for population stratification, and facilitate the study of parent-of-origin effects. Pedigrees selected for extreme trait values often segregate a single gene with strong effect. …

Examining The Prevalence Rates Of Preexisting Maternal Medical Conditions And Pregnancy Complications By Source: Evidence To Inform Maternal And Child Research, Candace A. Robledo, Edwina H. Yeung, Pauline Mendola, Rajeshwari Sundaram, Nansi S. Boghossian, Erin M. Bell, Charlotte Druschel

School of Medicine Publications

Objectives—We sought to examine whether there are systematic differences in ascertainment of preexisting maternal medical conditions and pregnancy complications from three common data sources used in epidemiologic research

Methods—Diabetes mellitus, chronic hypertension, gestational diabetes mellitus (GDM), gestational hypertensive disorders (GHD), placental abruption and premature rupture of membranes (PROM) among 4821 pregnancies were identified via birth certificates, maternal self-report at approximately 4 months postpartum and by discharge codes from the Statewide Planning and Research Cooperative System (SPARCS), a mandatory New York State hospital reporting system. The kappa statistic (k) was estimated to ascertain beyond chance agreement of outcomes between birth certificates …

Calibration Of The Advanced Ligo Detectors For The Discovery Of The Binary Black-Hole Merger Gw150914, B. P. Abbott, R. Abbott, T. D. Abbott, M. R. Abernathy, K. Ackley, Mario C. Diaz, Joey S. Key, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov

Physics & Astronomy Faculty Publications

In Advanced LIGO, detection and astrophysical source parameter estimation of the binary black hole merger GW150914 requires a calibrated estimate of the gravitational-wave strain sensed by the detectors. Producing an estimate from each detector's differential arm length control loop readout signals requires applying time domain filters, which are designed from a frequency domain model of the detector's gravitational-wave response. The gravitational-wave response model is determined by the detector's opto-mechanical response and the properties of its feedback control system. The measurements used to validate the model and characterize its uncertainty are derived primarily from a dedicated photon radiation pressure actuator, with …

Upper Limits On The Stochastic Gravitational-Wave Background From Advanced Ligo's First Observing Run, B. P. Abbott, Teviet Creighton, Mario C. Diaz, S. R. Morriss, Soma Mukherjee, Marc E. Normandin, Volker Quetschke, Malik Rakhmanov, Joseph D. Romano, Robert Stone, Darkhan Tuyenbayev, Guillermo Valdes

Physics & Astronomy Faculty Publications

A wide variety of astrophysical and cosmological sources are expected to contribute to a stochastic gravitational-wave background. Following the observations of GW150914 and GW151226, the rate and mass of coalescing binary black holes appear to be greater than many previous expectations. As a result, the stochastic background from unresolved compact binary coalescences is expected to be particularly loud. We perform a search for the isotropic stochastic gravitational-wave background using data from Advanced Laser Interferometer Gravitational Wave Observatory's (aLIGO) first observing run. The data display no evidence of a stochastic gravitational-wave signal. We constrain the dimensionless energy density of gravitational waves …

Directional Limits On Persistent Gravitational Waves From Advanced Ligo's First Observing Run, B. P. Abbott, Teviet Creighton, Mario C. Diaz, S. R. Morriss, Soma Mukherjee, Marc E. Normandin, Volker Quetschke, Malik Rakhmanov, Joseph D. Romano, Robert Stone, Darkhan Tuyenbayev, Guillermo Valdes

Physics & Astronomy Faculty Publications

We employ gravitational-wave radiometry to map the stochastic gravitational wave background expected from a variety of contributing mechanisms and test the assumption of isotropy using data from the Advanced Laser Interferometer Gravitational Wave Observatory’s (aLIGO) first observing run. We also search for persistent gravitational waves from point sources with only minimal assumptions over the 20–1726 Hz frequency band. Finding no evidence of gravitational waves from either point sources or a stochastic background, we set limits at 90% confidence. For broadband point sources, we report upper limits on the gravitational wave energy flux per unit frequency in the range Fα,Θ(f)

The Rider (2017-03-20), Jesus Sanchez

The Rider Archives

Vol.2 No.23

Calmodulin Lobes Facilitate Dimerization And Activation Of Estrogen Receptor-Alpha, Zhigang Li, Yonghong Zhang, Andrew C. Hedman, James B. Ames, David B. Sacks

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Estrogen receptor α (ER-α) is a nuclear hormone receptor that controls selected genes, thereby regulating proliferation and differentiation of target tissues, such as breast. Gene expression controlled by ER-α is modulated by Ca²⁺ via calmodulin (CaM). Here we present the NMR structure of Ca²⁺-CaM bound to two molecules of ER-α (residues 287–305). The two lobes of CaM bind to the same site on two separate ER-α molecules (residues 292, 296, 299, 302, and 303), which explains why CaM binds two molecules of ER-α in a 1:2 complex and stabilizes ER-α dimerization. Exposed glutamate residues in CaM (Glu-11, …

Calmodulin Lobes Facilitate Dimerization And Activation Of Estrogen Receptor-Α, Zhigang Li, Yonghong Zhang, Andrew C. Hedman, James B. Ames, David B. Sacks

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Estrogen receptor α (ER-α) is a nuclear hormone receptor that controls selected genes, thereby regulating proliferation and differentiation of target tissues, such as breast. Gene expression controlled by ER-α is modulated by Ca2+ via calmodulin (CaM). Here we present the NMR structure of Ca2+-CaM bound to two molecules of ER-α (residues 287–305). The two lobes of CaM bind to the same site on two separate ER-α molecules (residues 292, 296, 299, 302, and 303), which explains why CaM binds two molecules of ER-α in a 1:2 complex and stabilizes ER-α dimerization. Exposed glutamate residues in CaM (Glu-11, Glu-14, Glu-84, …

Exploring The Activity Of Daily Living Of Sexual Activity: A Survey In Occupational Therapy Education, Helene L. Lohman, Alexandra Kobrin, Wen-Pin Chang

Occupational Therapy Faculty Publications

This study aimed to query occupational therapy educators in professional programs in the United States about the amount of time spent addressing sexual activity and the type and depth of education related to sexual activity. The study aims to inform educators about how sexual activity is taught. A cross-sectional survey research design was used with both closed-and open-ended questions. A total of 51 educators participated. An average of 3.5 hr was spent teaching sexual activity. Many of the participants were comfortable teaching sexual activity. However, some reported that sexual activity was often an overlooked topic in occupational therapy curriculum and …

The Role Of Language In Anatomy And Physiology Instruction, Angela M. Chapman, Hsuying C. Ward, Ashwini Tiwari, Amy Weimer, Jaime B. Duran, Federico R. Guerra, Robert Paul Sale

Teaching and Learning Faculty Publications

Research indicates that student learning of science, student attitudes toward science, and their motivation to learn science and pursue science-related careers is related to classroom instruction. This study examined anatomy and physiology (A&P) classes in a south Texas high school where 97 percent of students are Hispanic bilingual learners. Classes were assigned to control or treatment groups, with the treatment group receiving instruction designed to help students develop a deeper understanding of anatomy vocabulary related to brain structures by making connections to these words in everyday life as well as to their understanding of Spanish. Main effects between group and …

Diversity Of Deep-Sea Fishes Of The Easter Island Ecoregion, Erin E. Easton, Javier Sellanes, Carlos F. Gaymer, Naiti A. Morales, Matthias Gorny, Eric Berkenpas

School of Earth, Environmental, & Marine Sciences Faculty Publications

The Easter Island Ecoregion is in the center of the South Pacific gyre and experiences ultra-oligotrophic conditions that could make it highly susceptible to global change and anthropogenic activities, so it is imperative that these regions are characterized and studied so that conservation and sustainable management strategies can be developed. From the few studies from the region, we know that the coastal areas are relatively depauperate and have relatively high rates of endemism. Here, we present a brief report from the first video observations from this region of the deep-dwelling fishes from ROV exploration of benthic communities from …

Recruitment Patterns Of Juvenile Fish At An Artificial Reef Area In The Gulf Of Mexico, Rachel Noel Arney, Catheline Y. M. Froehlich, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

In 2011 the Texas Parks and Wildlife Department and the Coastal Conservation Association of Texas deployed over 4,000 concrete culverts in a designated artificial reef area off Port Mansfield, Texas, to enhance habitat for sport fish species in the Gulf of Mexico. A study was conducted to assess juvenile fish recruitment at varying culvert densities within the artificial reef area. Standard monitoring units for the recruitment of reef fish (SMURFs) were used to sample juvenile fish, and these collections were compared with visual scuba surveys. The 0.027-m3 SMURFs were placed at four different culvert densities (0, 1–50, 51–100, and 101+ …

Sequential Displacement Of Type Vi Secretion System Effector Genes Leads To Evolution Of Diverse Immunity Gene Arrays In Vibrio Cholerae, Paul C. Kirchberger, Daniel Unterweger, Daniele Provenzano, Stefan Pukatzki, Yan Boucher

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Type VI secretion systems (T6SS) enable bacteria to engage neighboring cells in contact-dependent competition. In Vibrio cholerae, three chromosomal clusters each encode a pair of effector and immunity genes downstream of those encoding the T6SS structural machinery for effector delivery. Different combinations of effector-immunity proteins lead to competition between strains of V. cholerae, which are thought to be protected only from the toxicity of their own effectors. Screening of all publically available V. cholerae genomes showed that numerous strains possess long arrays of orphan immunity genes encoded in the 3' region of their T6SS clusters. Phylogenetic analysis reveals that these …

Multiple Exciton Generation In Si And Ge Nanocrystals: An Ab Initio Comparative Study, Mahdi Gordi, Hamidreza Ramezani, Mohammad Kazem Moravvej-Farshi

Physics & Astronomy Faculty Publications

We have simulated multiexciton generation (MEG) processes in Si and Ge nanocrystals, employing the equation of motion coupled cluster single and double as a high-level ab initio approach. Simulations, consistent with the experimental results reported so far, reveal the key role of the d-polarized valence component in the chosen basis set on the accuracy and reliability of the results. Moreover, the MEG thresholds calculated with def2SVP basis set are ∼8.23(8.07) eV for seven (eight)-atom Si clusters and ∼7.58(6.84) eV for similar Ge clusters. The normalized MEG thresholds of Ge nanocrystals are 8% smaller with respect to Si. Thus, in …