Digital Commons Network^™

A Manual On The Planning And Integration Of Archaeological Methods In To Outdoor Forensic Search Investigations, Jonathan Robert Garcia

Department of Anthropology: Theses and Student Research

As archaeology and its applications into forensic contexts develop into the growing discipline of forensic archaeology, an increasing amount of literature has resulted stemming from research on the integration of common archaeological methods. However, much of this literature is intended for professional archaeologists or forensic anthropologists who are well experienced in their respective disciplines. Emerging literature generally does not consider those who leads efforts at forensic scenes in the outdoors such as law enforcement officers who often lack a background in archaeology or forensic anthropology. This thesis seeks to resolve this dilemma by creating a new and accessible manual. The …

Bidding Strategy For A Wind Power Producer In Us Energy And Reserve Markets, Anne Stratman

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Wind power is one of the world's fastest-growing renewable energy resources and has expanded quickly within the US electric grid. Currently, wind power producers (WPPs) may sell energy products in US markets but are not allowed to sell reserve products, due to the uncertain and intermittent nature of wind power. However, as wind’s share of the power supply grows, it may eventually be necessary for WPPs to contribute to system-wide reserves. This paper proposes a stochastic optimization model to determine the optimal offer strategy for a WPP that participates in the day-ahead and real-time energy and spinning reserve markets. The …

Vr Circuit Simulation With Advanced Visualization For Enhancing Comprehension In Electrical Engineering, Elliott Wolbach

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

As technology advances, the field of electrical and computer engineering continuously demands innovative tools and methodologies to facilitate effective learning and comprehension of fundamental concepts. Through a comprehensive literature review, it was discovered that there was a gap in the current research on using VR technology to effectively visualize and comprehend non-observable electrical characteristics of electronic circuits. This thesis explores the integration of Virtual Reality (VR) technology and real-time electronic circuit simulation with enhanced visualization of non-observable concepts such as voltage distribution and current flow within these circuits. The primary objective is to develop an immersive educational platform that makes …

An Investigation Of Information Structures In Dna, Joel Mohrmann

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

The information-containing nature of the DNA molecule has been long known and observed. One technique for quantifying the relationships existing within the information contained in DNA sequences is an entity from information theory known as the average mutual information (AMI) profile. This investigation sought to use principally the AMI profile along with a few other metrics to explore the structure of the information contained in DNA sequences.

Treating DNA sequences as an information source, several computational methods were employed to model their information structure. Maximum likelihood and maximum a posteriori estimators were used to predict missing bases in DNA sequences. …

Concepts In Animal Parasitology: Master Bibliography, Sue Ann Gardner

Concepts in Animal Parasitology

Master bibliography for the open educational resource/open access textbook Concepts in Animal Parasitology, Scott L. Gardner and Sue Ann Gardner, editors, published by Zea Books, Lincoln, Nebraska, United States, 2024. This includes the references from literature cited and suggested supplemental reading.

An Autosomal Recessive Variant In Pygm Causes Myophosphorylase Deficiency In Red Angus Composite Cattle, Mackenzie Batt, Leila G. Venzor, Keri Gardner, Rachel R. Reith, Kelsey A. Roberts, Nicolas J. Herrera, Anna M. Fuller, Gary Sullivan, J. Travis Mulliniks, Matthew L. Spangler, Stephanie J. Valberg, David J. Steffen, Jessica Lynn Petersen

Department of Animal Science: Faculty Publications

Background Between 2020 and 2022, eight calves in a Nebraska herd (composite Simmental, Red Angus, Gelbvieh) displayed exercise intolerance during forced activity. In some cases, the calves collapsed and did not recover. Available sire pedigrees contained a paternal ancestor within 2–4 generations in all affected calves. Pedigrees of the calves’ dams were unavailable, however, the cows were ranch-raised and retained from prior breeding seasons, where bulls used for breeding occasionally had a common ancestor. Therefore, it was hypothesized that a de novo autosomal recessive variant was causative of exercise intolerance in these calves.

Results A genome-wide association analysis utilizing SNP …

Linking Reactive Nitrogen Species Within The Vadose Zone With Surface Irrigation, Kaitlyn Richards

Honors Program: Senior Projects (Public)

This study investigated the relationship between irrigation methods and the mobilization of nitrogen in the vadose zone, focusing on soil properties, water dynamics, and nitrogen species distribution. Data collected from dryland and pivot-irrigated soil cores reveal distinct patterns in water content, bulk density, soil texture, pH, conductivity, and nitrogen concentrations. Results indicated that water content has a major influence in nitrogen availability and microbial activity. Nitrate-N and ammonium-N concentrations varied between dryland and pivot soils, with notable disparities observed. In dryland soils, nitrate-N concentrations varied widely across depth intervals, with notable accumulation in deeper layers, while ammonium-N concentrations exhibited a …

Overexpression Of Msdreb1c Modulates Growth And Improves Forage Quality In Tetraploid Alfalfa (Medicago Sativa L.), Yangyang Zhang, Zhen Wang, Fan Zhang, Xue Wang, Yajing Li, Ruicai Long, Mingna Li, Xianyang Li, Quanzhen Wang, Qingchuan Yang, Junmei Kang

Department of Agronomy and Horticulture: Faculty Publications

DREB has been reported to be involved in plant growth and response to environmental factors. However, the function of DREB in growth and development has not been elucidated in alfalfa (Medicago sativa L.), a perennial tetraploid forage cultivated worldwide. In this study, an ortholog of MtDREB1C was characterized from alfalfa and named MsDREB1C accordingly. MsDREB1C was significantly induced by abiotic stress. The transcription factor MsDREB1C resided in the nucleus and had self-transactivation activity. The MsDREB1C overexpression (OE) alfalfa displayed growth retardation under both long-day and short-day conditions, which was supported by decreased MsGA20ox and upregulated MsGA2ox in the OE …

Genetic Diversity Of United States Rambouillet, Katahdin And Dorper Sheep, Gabrielle M. Becker, Jacob W. Thorne, Joan M. Burke, Ronald M. Lewis, David R. Notter, James L. M. Morgan, Christopher S. Schauer, Whit C. Stewart, R. R. Redden, Brenda M. Murdoch

Department of Animal Science: Faculty Publications

Background Managing genetic diversity is critically important for maintaining species fitness. Excessive homozygosity caused by the loss of genetic diversity can have detrimental effects on the reproduction and production performance of a breed. Analysis of genetic diversity can facilitate the identification of signatures of selection which may contribute to the specific characteristics regarding the health, production and physical appearance of a breed or population. In this study, breeds with well-characterized traits such as fine wool production (Rambouillet, N = 745), parasite resistance (Katahdin, N = 581) and environmental hardiness (Dorper, N = 265) were evaluated for inbreeding, effective population size …

Overall And Sex-Specific Associations Of Serum Lipid-Soluble Micronutrients With Metabolic Dysfunction-Associated Steatotic Liver Disease Among Adults In The United States, Weiwen Chai, Meng-Hua Tao

Department of Nutrition and Health Sciences: Faculty Publications

This study examined overall and sex-specific associations of serum lipid-soluble micronutrients including α- and γ-tocopherols, 25-hydroxy-vitamin D (25(OH)D), retinol, and six major carotenoids with metabolic dysfunction-associated steatotic lever disease (MASLD) using the 2017–2018 National Health and Nutrition Examination Survey. This analysis included 3956 adults (1991 men, 1965 women) aged ≥ 20 years. Steatotic liver disease was determined through transient elastography examination. Odds ratios (ORs) and 95% confidence intervals (95% CIs) for MASLD associated with micronutrients were estimated using logistic regressions. Higher serum α-tocopherol (highest vs. lowest quartile: OR = 1.53, 95% CI = 1.05–2.22, p = 0.03) and γ-tocopherol (highest …

Road To A Chemistry-Specific Data Management Plan, Daniela Adele Hausen, Ann-Christin Andres, Jochen Ortmeyer, Sonja Herres-Pawlis

Copyright, Fair Use, Scholarly Communication, etc.

In order to develop a discipline-specific data management plan (DMP) template, it is important to obtain information from researchers. For a chemistry-specific template, NFDI4Chem conducted a series of interviews with 27 participants and used data from the RDA WG Discipline-specific Guidance for DMP online survey.

The interviews showed that the implementation of research data management in everyday work is a big challenge. Key findings from the interview series highlight challenges in implementing FAIR principles, with a focus on “Findability” and “Reusability.” The importance of linking physical samples and data in chemistry is emphasised, with discussions on storage, archiving, and the …

Injectable And Rapidly Expandable Thrombin-Decorated Cryogels Achieve Rapid Hemostasis And High Survival Rates In A Swine Model Of Lethal Junctional Hemorrhage, Syed Muntazir Andrabi, S.M. Shatil Shahriar, Al-Murtadha Al-Gahmi, Benjamin L. Wilczewski, Mark A. Carlson, Jingwei Xie

Department of Mechanical and Materials Engineering: Faculty Publications

Effective therapies are urgently needed to stabilize patients with marginally compressible junctional hemorrhage long enough to get them to the hospital alive. Herein, we report injectable and rapidly expandable cryogels consisting of polyacrylamide and thrombin (AT cryogels) created by cryo-polymerization for the efficient management of lethal junctional hemorrhage in swine. The produced cryogels have small pore sizes and highly interconnected porous architecture with robust mechanical strength. The cryogels exhibit rapid shape memory properties and prove to be resilient against fatigue. These cryogels also show high water/blood absorption capacity, fast blood clotting effect, and enhanced adhesion of red blood cells and …

Evaluating Consistency Across Multiple Neospectra (Compact Fourier Transform Near-Infrared) Spectrometers For Estimating Common Soil Properties, Sadia M. Mitu, Colleen Smith, Jonathan Sanderman, Richard R. Ferguson, Keith Shepherd, Yufeng Ge

Department of Agronomy and Horticulture: Faculty Publications

Rapid and cost-effective techniques for soil analysis are essential to guide sustainable land management and production agriculture. This study aimed at evaluating the performance and consistency of portable handheld Fourier-transform near-infrared spectrometers and the NeoSpectra scanners in estimating 12 common soil physical and chemical properties including pH; organic carbon (OC); inorganic carbon (IC); total nitrogen (TN); cation exchange capacity (CEC); clay, silt, and sand fractions; and exchangeable potassium (K), phosphorus (P), calcium (Ca), and magnesium (Mg). A diverse set of samples (n = 600) were retrieved from a national-scale soil archive of the Kellogg Soil Survey Laboratory of USDA-NRCS …

Scalable Relational Analysis Via Relational Bound Propagation, Clay Stevens, Hamid Bagheri

School of Computing: Faculty Publications

Bounded formal analysis techniques (such as bounded model checking) are incredibly powerful tools for today’s software engineers. However, such techniques often suffer from scalability challenges when applied to large-scale, real-world systems. It can be very difficult to ensure the bounds are set properly, which can have a profound impact on the performance and scalability of any bounded formal analysis. In this paper, we propose a novel approach—relational bound propagation—which leverages the semantics of the underlying relational logic formula encoded by the specification to automatically tighten the bounds for any relational specification. Our approach applies two sets of semantic rules to …

Data-Driven Evidence-Based Syntactic Sugar Design, David Obrien, Robert Dyer, Tien N. Nguyen, Hridesh Rajan

School of Computing: Faculty Publications

Programming languages are essential tools for developers, and their evolution plays a crucial role in supporting the activities of developers. One instance of programming language evolution is the introduction of syntactic sugars, which are additional syntax elements that provide alternative, more readable code constructs. However, the process of designing and evolving a programming language has traditionally been guided by anecdotal experiences and intuition. Recent advances in tools and methodologies for mining open-source repositories have enabled developers to make datadriven software engineering decisions. In light of this, this paper proposes an approach for motivating data-driven programming evolution by applying frequent subgraph …

Stress Phenotyping Analysis Leveraging Autofluorescence Image Sequences With Machine Learning, Sruti Das Choudhury, Carmela Rosaria Guadagno, Srinidhi Bashyam, Anastasios Mazis, Brent E. Ewers, Ashok Samal, Tala Awada

School of Natural Resources: Faculty Publications

Background: Autofluorescence-based imaging has the potential to nondestructively characterize the biochemical and physiological properties of plants regulated by genotypes using optical properties of the tissue. A comparative study of stress tolerant and stress susceptible genotypes of Brassica rapa with respect to newly introduced stress-based phenotypes using machine learning techniques will contribute to the significant advancement of autofluorescence-based plant phenotyping research.

Methods: Autofluorescence spectral images have been used to design a stress detection classifier with two classes, stressed and non-stressed, using machine learning algorithms. The benchmark dataset consisted of time-series image sequences from three Brassica rapa genotypes (CC …

Post-Translational Regulation Of A Bidomain Glycerol-3-Phosphate Dehydrogenase Catalyzing Glycerol Synthesis Under Salinity Stress In Chlamydomonas Reinhardtii, Itzela Cruz-Powell, Binita Subedi, Yeongho Kim, Daniela Morales-Sánchez, Heriberto D. Cerutti

Center for Plant Science Innovation: Faculty Publications

Core chlorophytes possess glycerol-3-phosphate dehydrogenases (GPDs) with an unusual bidomain structure, consisting of a glycerol-3-phosphate phosphatase (GPP) domain fused to canonical GPD domains. These plastid-localized enzymes have been implicated in stress responses, being required for the synthesis of glycerol under high salinity and triacylglycerols under nutrient deprivation. However, their regulation under varying environmental conditions is poorly understood. C. reinhardtii transgenic strains expressing constitutively bidomain GPD2 did not accumulate glycerol or triacylglycerols in the absence of any environmental stress. Although the glycerol contents of both wild type and transgenic strains increased significantly upon exposure to high salinity, cycloheximide, an inhibitor of …

Accurate Measurement Of Field Size Is Essential For Analysis Of Smallholder Survey Data, Rica Joy Flor, Shen Yuan, Gonzalo Rizzo, Fahmuddin Agus, Anny Ruth P. Pame, Akhara Ouk, Rathmuny Then, Sokheng Keo, Virender Kumar, Particio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Context: Agronomic surveys play a vital role in identifying on-farm yield constraints and opportunities to increase productivity, input-use efficiency, and farmer profit. These surveys typically rely on farmer-reported data, where crop yield and applied inputs per hectare are estimated based on farmer-reported total harvested output and applied inputs per field and associated field size. At question is how accurate field size is, which is vital in the case of smallholders as small inaccuracies can lead to large biases in estimated yield and inputs.

Objectives: The goals of this study are to assess current approaches to determine field size …

Controlling The Broadband Enhanced Light Chirality With L-Shaped Dielectric Metamaterials, Ufuk Kilic, Matthew Hilfiker, Shawn Wimer, Alexander Ruder, Eva Schubert, Mathias Schubert, Christos Argyropoulos

Department of Electrical and Computer Engineering: Faculty Publications

The inherently weak chiroptical responses of natural materials limit their usage for controlling and enhancing chiral light-matter interactions. Recently, several nanostructures with subwavelength scale dimensions were demonstrated, mainly due to the advent of nanofabrication technologies, as a potential alternative to efficiently enhance chirality. However, the intrinsic lossy nature of metals and the inherent narrowband response of dielectric planar thin films or metasurface structures pose severe limitations toward the practical realization of broadband and tailorable chiral systems. Here, we tackle these problems by designing all-dielectric silicon-based L-shaped optical metamaterials based on tilted nanopillars that exhibit broadband and enhanced chiroptical response in …

“It Didn’T Hurt Me”: Patients’ And Providers’ Perspectives On Unsupervised Take‑Home Doses, Drug Diversion, And Overdose Risks In The Provision Of Medication For Opioid Use Disorder During Covid‑19 In San Juan, Puerto Rico, Roberto Abadie, Celia B. Fisher

School of Global Integrative Studies: Faculty Publications

Background During the COVID−19 pandemic, clinics offering medication for opioid use disorder (MOUD) needed to rapidly introduce unsupervised take−home dosing, while relapsing patients and patients unable to enter treatment faced increased risks of fentanyl−related overdose deaths and other drug−related harms. Based on a qualitative study of people who inject drugs (PWID) receiving MOUD treatment and MOUD staff in Puerto Rico, this paper documents the lived experiences of patients and providers during this period and the risk perceptions and management strategies to address substance misuse and drug diversion attributable to unsupervised take−home−dose delivery

Methods In−depth qualitative interviews were conducted with patients …

Assessment Of Satellite-Based Water Requirements For A Drip-Irrigated Apple Orchard In Mediterranean Agroclimatic Conditions, Daniel De La Fuente-Saiz, Samuel Ortega-Farias, Marcos Carrasco-Benavides, Samuel Ortega-Salazar, Fei Tian, Sufen Wang, Yi Liu

Department of Civil and Environmental Engineering: Faculty Publications

Accurate assessment of evapotranspiration (ETa) and crop coefficient (Kc) is crucial for optimizing irrigation practices in water-scarce regions. While satellite-based surface energy balance models offer a promising solution, their application to sparse canopies like apple orchards requires specific validation. This study investigated the spatial and temporal dynamics of ETa and Kc in a drip-irrigated ‘Pink Lady’ apple orchard under Mediterranean conditions over three growing seasons (2012/13, 2013/14, 2014/15). The METRIC model, incorporating calibrated sub-models for leaf area index (LAI), surface roughness (Z_om), and soil heat flux (G), was employed to estimate ETa and Kc. These estimates were validated …

Increased Dietary Trp, Thr, And Met Supplementation Improves Performance, Health, And Protein Metabolism Of Weaned Piglets Under Mixed Management And Poor Housing Conditions, Joseane Penteado Rosa Gonçalves, Antonio Diego Brandão Melo, Qinnan Yang, Marllon José Karpeggiane De Oliveira, Danilo Alves Marçal, Manoela Trevisan Ortiz, Pedro Righetti Arnaut, Ismael França, Graziela Alves Da Cunha Valini, Cleslei Alisson Silva, Nate Korth, Natasha Pavlovikj, Paulo Henrique Reis Furtado Campos, Henrique Gastmann Brand, John Kyaw Htoo, João Carlos Gomes-Neto, Andrew K. Benson, Luciano Hauschild

Department of Food Science and Technology: Faculty Publications

A sanitary challenge was carried out to induce suboptimal herd health while investigating the effect of amino acids supplementation on piglet responses. Weaned piglets of high sanitary status (6.33 ± 0.91 kg of BW) were distributed in a 2 × 2 factorial arrangement into two similar facilities with contrasting sanitary conditions and two different diets. Our results suggest that increased Trp, Thr, and Met dietary supplementation could support the immune systems of piglets under a sanitary challenge. In this manner, AA+ supplementation improved the performance and metabolism of piglets under mixed management and poor sanitary conditions. No major temporal microbiome …

Mental Healthcare Differences Between The United States, Costa Rica, And Sweden, Michaela Diehm

Honors Program: Senior Projects (Public)

Countries such as the United States, Costa Rica, and Sweden differ in the ways that they approach treatment of mental health disorders, which is due to the structure of their healthcare as well as the culture, affordability, accessibility, and type of treatment that is available to the people of that country. A literature review did not reveal a comparison of the three countries related to the topic of mental healthcare, nor use of the three selected countries to review their structures to determine the best approach to combating mental disorders before. Costa Rica and Sweden are both countries with universal …

Predicting The Potential Distribution Of Pseudococcus Longispinus (Targioni-Tozzetti) (Hemiptera: Pseudococcidae) In South Korea Using A Climex Model, Su Bin Kim, Soo-Jung Suh

Insecta Mundi

Pseudococcus longispinus (Targioni-Tozzetti) (Hemiptera: Pseudococcidae) is a widely-distributed pest that feeds on many economically important hosts, particularly tropical fruits and ornamentals. The potential distribution of this mealybug pest in South Korea remains a primary concern because of its high incidence of interceptions screened during inspection. Hence, this species prompted a modelling effort to assess its potential risk of introduction. Potential risk maps were developed for this pest with a CLIMEX model based on occurrence records under environmental data. The potential distribution of these pests in South Korea in the 2020s, 2050s and 2090s was projected based on the RCP 8.5 …

Globe-Lfmc 2.0, An Enhanced And Updated Dataset For Live Fuel Moisture Content Research, Marta Yebra, Gianluca Scortechini, Karine Adeline, Nursema Aktepe, Turkia Almoustafa, Avi Bar-Massada, María Eugenia Beget, Matthias Boer, Ross Bradstock, Tegan Brown, Francesc Xavier Castro, Rui Chen, Emilio Chuvieco, Mark Danson, Cihan Ünal Değirmenci, Ruth Delgado-Dávila, Philip Dennison, Carlos Di Bella, Oriol Domenech, Jean-Baptiste Féret, Greg Forsyth, Eva Gabriel, Zisis Gagkas, Fatma Gharbi, Elena Granda, Anne Griebel, Binbin He, Matt Jolly, Ivan Kotzur, Tineke Kraaij, Agnes Kristina, Pınar Kütküt, Jean-Marc Limousin, M. Pilar Martín, Antonio T. Monteiro, Marco Morais, Bruno Moreira, Florent Mouillot, Samukelisiwe Msweli, Rachael H. Nolan, Grazia Pellizzaro, Yi Qi, Xingwen Quan, Victor Esco De Dios, Dar Roberts, Çağatay Tavşanoğlu, Andy F. S. Taylor, Jackson Taylor, İrem Tüfekcioğlu, Andrea Ventura, Nicolas Younes Cardenas

School of Natural Resources: Faculty Publications

Globe-LFMC 2.0, an updated version of Globe-LFMC, is a comprehensive dataset of over 280,000 Live Fuel Moisture Content (LFMC) measurements. These measurements were gathered through field campaigns conducted in 15 countries spanning 47 years. In contrast to its prior version, Globe-LFMC 2.0 incorporates over 120,000 additional data entries, introduces more than 800 new sampling sites, and comprises LFMC values obtained from samples collected until the calendar year 2023. Each entry within the dataset provides essential information, including date, geographical coordinates, plant species, functional type, and, where available, topographical details. Moreover, the dataset encompasses insights into the sampling and weighing procedures, …

Soil Health Cycle, Bijesh Maharjan, Saurav Das, Vesh R. Thapa, Bharat Sharma Acharya

Department of Agronomy and Horticulture: Faculty Publications

Soil health is pivotal to agricultural sustainability. Promoting and sustaining soil health management is challenging since it involves many interdependent components and steps and is an iterative process. Herein, the soil health cycle (SHC) is proposed as a soil health management cycle encompassing human dimensions, management practices, and their effects on soil health indicators (SHIs), leading to subsequent impacts on soil functions. The SHC provides a structure for an iterative testing of changes to improve soil health. A systematic review of research publications was also conducted using the Web of Science database supplemented by Elicit AI and Scopus API searches …

Sex Differences And Sex‑Specific Regulation Of Motivated Behavior By Melanin‑Concentrating Hormone: A Short Review, Isabel R. K. Kuebler, Mauricio Suárez, Ken T. Wakabayashi

Department of Psychology: Faculty Publications

Recent preclinical research exploring how neuropeptide transmitter systems regulate motivated behavior reveal the increasing importance of sex as a critical biological variable. Neuropeptide systems and their central circuits both contribute to sex differences in a range of motivated behaviors and regulate sex-specific behaviors. In this short review, we explore the current research of how sex as a biological variable influences several distinct motivated behaviors that are modulated by the melanin-concentrating hormone (MCH) neuropeptide system. First, we review how MCH regulates feeding behavior within the context of energy homeostasis differently between male and female rodents. Then, we focus on MCH’s role …

Phys 211h

Department of Physics and Astronomy: Syllabi

No abstract provided.

Phys 918

Department of Physics and Astronomy: Syllabi

No abstract provided.

Phys 926

Department of Physics and Astronomy: Syllabi

No abstract provided.