Digital Commons Network^™

Ecosystem Processes, Land Cover, Climate, And Human Settlement Shape Dynamic Distributions For Golden Eagle Across The Western Us, J.D. Tack, B.R. Noon, Z.H. Bowen, B.C. Fedy

United States Geological Survey: Staff Publications

Species–environment relationships for highly mobile species outside of the breeding season are often highly dynamic in response to the collective effects of everchanging climatic conditions, food resources, and anthropogenic disturbance. Capturing dynamic space-use patterns in a model-based framework is critical as model inference often drives place-based conservation planning. We applied dynamic occupancy models to broad-scale golden eagle Aquila chrysaetos survey data collected annually from 2006 to 2012 during the late summer post-fledging period in the western US. We defined survey sites as 10 km transect segments with a 1 km buffer on either transect side (n = 3540). Derived estimates …

Coastal Wetlands: A Synthesis, Charles S. Hopkinson, Eric Wolanski, Mark M. Brinson, Daonald R. Cahoon, Gerardo M.E. Perillo

United States Geological Survey: Staff Publications

What are coastal wetland ecosystems, what are their limits of distribution, and where do they exist in the overall coastal landscape? There are several general definitions for wetlands, but the Ramsar definition is likely the most broadly encompassing (http://www.ramsar. org/), whereas others are more focused definitions tailored to country-specific protection and management policies (Mitsch and Gosselink, 2006). We offer a very general approach rather than a precise definition: coastal wetlands are ecosystems that are found within an elevation gradient that ranges between subtidal depths where light penetrates to support photosynthesis of benthic plants to the landward edge where the sea …

Promoting Change In Common Tern (Sterna Hirundo) Nest Site Selection To Minimize Construction Related Disturbance., Peter C. Mcgowan, Jeffery D. Sullivan, Carl R. Callahan, William Schultz, Jennifer L. Wall, Diann J. Prosser

United States Geological Survey: Staff Publications

Due to the many challenges facing waterbird populations (Jia et al. 2018, Wetlands International 2018), it has become common practice to limit disturbance to breeding colonies whenever possible to maximize reproductive success. While this may require often unpopular management techniques including beach closures (Jorgensen et al. 2015, Mayo et al. 2015) and predator removal (Neuman et al. 2004, Stocking et al. 2017), such actions are sometimes necessary for the success of the colony. However, there are instances when eliminating disturbance is not possible and birds must be attracted to a new site. A common method for attracting waterbirds to a …

Assessment Of Chronic Low-Dose Elemental And Radiological Exposures Of Biota At The Kanab North Uranium Mine Site In The Grand Canyon Watershed, Danielle Cleveland, Jo Ellen Hinck, Julia S. Lankton

United States Geological Survey: Staff Publications

High-grade U ore deposits are in various stages of exploitation across the Grand Canyon watershed, yet the effects of U mining on ecological and cultural resources are largely unknown. Wecharacterized the concentrations of Al, As, Bi, Cd, Co, Cu, Fe, Pb, Hg, Mo, Ni, Se, Ag, Tl, Th, U, and Zn, gross alpha and beta activities, and U and Th radioisotopes in soil, vegetation (Hesperostipa comata, Artemisia tridentata, Tamarix chinensis), and rodents (Peromyscus maniculatus, P. boylii) to waste material at the Kanab North mine, a mine with decades-long surficial contamination, and compared the concentrations (P<0.01) to those at a premining site (Canyon Mine). Rodent tissues were also analyzed for radium-226 and microscopic lesions. Radioactivities and some elemental concentrations (e.g., Co, Pb, U) were greater in the Kanab North mine biological samples than in Canyon Mine biota, indicating a mining-related elemental signature. Mean rodent Ra-226 (111 Bq/kg dry weight [dry wt]) was 3 times greater than expected, indicating radioactive disequilibrium. Multiple soil sample U concentrations exceeded a screening benchmark, growth inhibition thresholds for sensitive plants, and an EC20 for a soil arthropod. Lesions associated with metals exposure were also observed more frequently in rodents at Kanab North than those at Canyon Mine but could not be definitively attributed to U mining. Our results indicate that Kanab North biota have taken up U mining-related elements owing to chronic exposure to surficial contamination. However, no literature-based effects thresholds for small rodents were exceeded, and only a few soil and vegetation thresholds for sensitive species were exceeded; therefore, adverse effects to biota from U mining-related elements at Kanab North are unlikely despite chronic exposure.

Forage Or Biofuel: Assessing Native Warm-Season Grass Production Among Seed Mixes And Harvest Frequencies Within A Wildlife Conservation Framework, Raymond B. Iglay, Tara J. Conkling, Travis L. Devault, Jerrold L. Belant, James A. Martin

United States Department of Agriculture Wildlife Services: Staff Publications

Native warm-season grasses (NWSG) are gaining merit as biofuel feedstocks for ethanol production with potential for concomitant production of cattle forage and wildlife habitat provision. However, uncertainty continues regarding optimal production approaches for biofuel yield and forage quality within landscapes of competing wildlife conservation objectives. We used a randomized complete block design of 4 treatments to compare vegetation structure, forage and biomass nutrients, and biomass yield between Panicum virgatum (Switchgrass) monocultures and NWSG polycultures harvested once or multiple times near West Point, MS, 2011–2013. Despite taller vegetation and greater biomass in Switchgrass monocultures, NWSG polycultures had greater vegetation structure heterogeneity …

Wildlife Management Practices Associated With Pathogen Exposure In Non-Nativewild Pigs In Florida, U.S., Amanda N. Carr, Michael P. Milleson, Felipe A. Hernandez, Hunter R. Merrill, Michael L. Avery, Samantha M. Wisely

United States Department of Agriculture Wildlife Services: Staff Publications

Land use influences disease emergence by changing the ecological dynamics of humans, wildlife, domestic animals, and pathogens. This is a central tenet of One Health, and one that is gaining momentum in wildlife management decision-making in the United States. Using almost 2000 serological samples collected from non-native wild pigs (Sus scrofa) throughout Florida (U.S.), we compared the prevalence and exposure risk of two directly transmitted pathogens, pseudorabies virus (PrV) and Brucella spp., to test the hypothesis that disease emergence would be positively correlated with one of the most basic wildlife management operations: Hunting. The seroprevalence of PrV- …

Necrobiome Framework For Bridging Decomposition Ecology Of Autotrophically And Heterotrophically Derived Organic Matter, M. Eric Benbow, Philip S. Barton, Michael D. Ulyshen, James C. Beasley, Travis L. Devault, Michael S. Strickland, Jeffery K. Tomberlin, Heather R. Jordan, Jennifer L. Pechal

United States Department of Agriculture Wildlife Services: Staff Publications

Decomposition contributes to global ecosystem function by contributing to nutrient recycling, energy flow, and limiting biomass accumulation. The decomposer organisms influencing this process form diverse, complex, and highly dynamic communities that often specialize on different plant or animal resources. Despite performing the same net role, there is a need to conceptually synthesize information on the structure and function of decomposer communities across the spectrum of dead plant and animal resources. A lack of synthesis has limited cross-disciplinary learning and research in important areas of ecosystem and community ecology. Here we expound on the “necrobiome” concept and develop a framework describing …

Non-Native Insects Dominate Daytime Pollination In A High-Elevation Hawaiian Dryland Ecosystem, Clare E. Aslan, Aaron B. Shiels, William Haines, Christina T. Liang

United States Department of Agriculture Wildlife Services: Staff Publications

PREMISE OF THE STUDY: Over one-third of the native flowering plant species in the Hawaiian Islands are listed as federally threatened or endangered. Lack of sufficient pollination could contribute to reductions in populations, reproduction, and genetic diversity among these species but has been little studied.

METHODS: We used systematic observations and manual flower treatments to quantify flower visitation and outcrossing dependency of eight native (including four endangered) plant species in a dryland ecosystem in Hawaii: Argemone glauca, Bidens menziesii, Dubautia linearis, Haplostachys haplostachya, Sida fallax, Silene lanceolata, Stenogyne angustifolia, and Tetramolopium arenarium. …

United States Midwest Soil And Weather Conditions Influence Anaerobic Potentially Mineralizable Nitrogen, Jason D. Clark, Kristen S. Veum, Fabian G. Fernandez, James J. Camberato, Paul R. Carter, Richard B. Ferguson, David W. Franzen, Daniel E. Kaiser, Newell R. Kitchen, Carrie A. M. Laboski, Emerson D. Nafziger, Carl J. Rosen, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen provided to crops through mineralization is an important factor in N management guidelines. Understanding of the interactive effects of soil and weather conditions on N mineralization needs to be improved. Relationships between anaerobic potentially mineralizable N (PMN_an) and soil and weather conditions were evaluated under the contrasting climates of eight US Midwestern states. Soil was sampled (0–30 cm) for PMN_an analysis before pre-plant N application (PP_0N) and at the V5 development stage from the pre-plant 0 (V5_0N) and 180 kg N ha−1 (V5_180N) rates and incubated for 7, 14, and …

In Vitro Bioaccessibility Of Novel Low-Crystallinity Phytosterol Nanoparticles In Non-Fat And Regular-Fat Foods, Ali Ubeyitogullari, Ozan Ciftci

Department of Food Science and Technology: Faculty Publications

Crystalline structure of phytosterols leads to poor bioavailability and makes their incorporation into foods challenging. Bioaccessibility of first-of-their-kind low-crystallinity phytosterol nanoparticles impregnated in nanoporous starch aerogels (PS-NSA) was evaluated in non-, low-, and regular-fat solid and aqueous food formulations, namely, granola bars and puddings for the first time. Bioaccessibility of the phytosterol nanoparticles was significantly higher than that of crude phytosterols in all food formulations (p < .05); it was 88.2 and 91.8% for low- or regular-fat granola bars, respectively, whereas bioaccessibility of crude phytosterols was ca. 30% in those formulations. However, decreasing the lipid content to zero resulted in lower phytosterols' bioaccessibilities from both PS-NSA (53%) and crude phytosterols (ca. 16%) in non-fat granola bars. Bioaccessibility of crude phytosterols (2%) was significantly enhanced with PS-NSA (19%) in the pudding formulation. PS-NSA allows preparation of low- and non-fat foods enriched with phytosterols while enhancing the health benefits of phytosterols with smaller doses.

Identification Of Sero-Diagnostic Antigens For The Early Diagnosis Of Johne’S Disease Using Map Protein Microarrays, Lingling Li, J. P. Bannantine, Joseph J. Campo, Arlo Randall, Yrjo T. Grohn, Megan A. Schilling, Robab Katani, Jessica Radzio-Basu, Laurel Easterling, Vivek Kapur

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Considerable effort has been directed toward controlling Johne’s disease (JD), a chronic granulomatous intestinal inflammatory disease caused by Mycobacterium avium subsp. paratuberculosis (MAP) in cattle and other ruminants. However, progress in controlling the spread of MAP infection has been impeded by the lack of reliable diagnostic tests that can identify animals early in the infection process and help break the transmission chain. To identify reliable antigens for early diagnosis of MAP infection, we constructed a MAP protein array with 868 purified recombinant MAP proteins, and screened a total of 180 well-characterized serum samples from cows assigned to 4 groups based …

Wolves: A Primer For Ranchers, John Williams, Douglas E. Johnson, Patrick E. Clark, Larry L. Larson, Tyanne J. Roland

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Ranch management has become more complex since wolves were reintroduced into Idaho and Wyoming in 1996. In wolf areas, livestock have experienced increased death loss and greater stress. Increased livestock aggressiveness has been observed, especially toward working dogs, making handling livestock more difficult. Additionally ranchers have reported a loss of body condition, lower conception rates, increased time and expense for management. Our study was designed to investigate the effect of wolf presence on cattle behavior, landscape use patterns, and resource selection by comparing high wolf density areas against low wolf density areas. This study also generated baseline information on cattle …

Evaluation Of Spray Pattern Uniformity Using Three Unique Analyses As Impacted By Nozzle, Pressure, And Pulse-Widthmodulation Duty Cycle, Thomas R. Butts, Joe D. Luck, Bradley K. Fritz, W. Clint Hoffmann, Greg R. Kruger

Department of Agronomy and Horticulture: Faculty Publications

BACKGROUND: The increasing popularity of pulse-width modulation (PWM) sprayers requires that application interaction effects on spray pattern uniformity be completely understood to maintain a uniform overlap of spray, thereby reducing crop injury potential andmaximizing coverage on target pests. The objective of this researchwas to determine the impacts of nozzle type (venturi vs. non-venturi), boom pressure, and PWMduty cycle on spray pattern uniformity. Research was conducted using an indoor spray patternator located at the University of Nebraska-Lincoln in Lincoln, NE, USA. Coefficient of variation (CV), root mean square error (RMSE), and average percent error (APE) were used to characterize spray pattern …

The Care Principles For Indigenous Data Governance, Global Indigenous Data Alliance

Copyright, Fair Use, Scholarly Communication, etc.

The CARE Principles for Indigenous Data Governance

The current movement toward open data and open science does not fully engage with Indigenous Peoples rights and interests. Existing principles within the open data movement (e.g. FAIR: findable, accessible, interoperable, reusable) primarily focus on characteristics of data that will facilitate increased data sharing among entities while ignoring power differentials and historical contexts. The emphasis on greater data sharing alone creates a tension for Indigenous Peoples who are also asserting greater control over the application and use of Indigenous data and Indigenous Knowledge for collective benefit.

This includes the right to create value …

Fractional Authorship & Publication Productivity, Kate Gasson, Rachel Herbert, Alex Ponsford

Copyright, Fair Use, Scholarly Communication, etc.

Authors divide their research output across publications, contributing via research collaborations

The trend is for authors to produce more publications per year (increased fractionalization) but for the overall number of publications per author to decrease

We suggest that the effort required to participate in research collaborations is a factor in the decrease in publications per author

Are authors collaborating more in response to the pressure to publish?

Growth in the number of scholarly publications each year has been well documented (e.g., Bornmann & Mutz, 2015, Figure 1). But how has that growth been achieved? Is it purely due to increasing …

From Coalition To Commons: Plan S And The Future Of Scholarly Communication, Rob Johnson

Copyright, Fair Use, Scholarly Communication, etc.

Abstract

The announcement of Plan S in September 2018 triggered a wide-ranging debate over how best to accelerate the shift to open access. The Plan’s ten principles represent a call for the creation of an intellectual commons, to be brought into being through collective action by funders and managed through regulated market mechanisms. As it gathers both momentum and critics, the coalition must grapple with questions of equity, efficiency and sustainability. The work of Elinor Ostrom has shown that successful management of the commons frequently relies on polycentricity and adaptive governance. The Plan S principles must therefore function as …

7th International Symposium On Galliformes (September 22–24, 2019: Quang Binh, Vietnam): Abstracts, World Pheasant Association, Việt Nature Conservation Centre

Galliformes Specialist Group and Affiliated Societies: Conference Proceedings

Abstracts

How much recent research help with plans to reintroduce Vietnam pheasant Lophura edwardsi to the world? Nigel Collar

Status and range decline of Germain’s peacock pheasant, Vy Nguyen Tran, Dusit Ngoprasert, Stephen Browne, and Tommaso Savini

Landscape-scale camera-trapping surveys fill the information gap about the distribution of galliforms in the Annamites, An Nguyen, Andrew Tilker, Jesse F. Abrams, Thanh V. Nguyen, Nguyen Quang Hoa Anh, Benjamin Rawson, Francois Guegan, Camille N. Z. Coudrat, Cao Tien Trung, Minh Le, Daniel Wilcox, and Andreas Wilting

Increasing the breeding success of two vulnerable peacock-pheasant species through antiparasitic interventions and hand-rearing Grace Tang …

The Need For Speed: How Quickly Do Preprints Become Published Articles?, Rachel Herbert, Kate Gasson, Alex Ponsford

Copyright, Fair Use, Scholarly Communication, etc.

bioRxiv’s option for authors to submit biology preprints directly to journals typically speeds up publication of articles by nearly 2 weeks—an advantage for authors who are keen to get their work published quickly

Authors approach ‘preprinting’ in different ways: while most post a preprint before submitting to a journal, just over a third of preprints were submitted to and accepted by a journal before the preprint appeared on bioRxiv

Biology preprints with just one version are published 2 weeks more quickly than those with multiple versions

Tools For Change: Measuring Student Conceptual Understanding Across Undergraduate Biology Programs Using Bio-Maps Assessments, Michelle K. Smith, Sara E. Brownell, Alison J. Crowe, N. G. Holmes, Jennifer K. Knight, Katharine Semsar, Mindi M. Summers, Cole Walsh, Christian D. Wright, Brian A. Couch

School of Biological Sciences: Faculty Publications

Assessing learning across a biology major can help departments monitor achievement of broader program-level goals and identify opportunities for curricular improvement. However, biology departments have lacked suitable tools to measure learning at the program scale. To address this need, we developed four freely available assessments—called Biology-Measuring Achievement and Progression in Science or Bio-MAPS—for general biology, molecular biology, ecology/evolution, and physiology programs. When administered at multiple time points in a curriculum, these instruments can provide departments with information on how student conceptual understanding changes across a major and help guide curricular modifications to enhance learning.

Psyc 462/862: Motivation And Emotion, Carolyn R. Brown-Kramer

UNL Faculty Course Portfolios

In this course portfolio, I examine the course goals, learning objectives, teaching methods and materials, assessments, and outcomes for an upper-level psychology elective course, PSYC 462/862, Motivation and Emotion. The course introduces students to the major theories of motivation and emotion, develops their ability to critically examine empirical psychological research, encourages the application of theoretical and empirical work to real-world contexts, and strengthens students’ communication skills. For each of the four course goals, I describe how and why I conduct the course as I do, as well as how my pedagogical choices influence student learning and engagement. Data analyses and …

Psyc/Wmns 421/821: Psychology Of Gender, Kathryn Holland

UNL Faculty Course Portfolios

This benchmark portfolio describes the process of developing and assessing student learning in Psychology of Gender (PSYC/WMNS 421/821)—a course I taught in Spring 2019 while participating in the Peer Review of Teaching Project at the University of Nebraska Lincoln. This course is housed in the Psychology Department and cross-listed in Women’s and Gender Studies. The students in this course are mostly advanced undergraduate psychology majors. The course is capped at 40 and is primarily discussion-based. In my portfolio, I outline the course structure and context, my course objectives, and the students enrolled. I also document the teaching materials, methods, and …

Course Portfolio For Assessing Student Learning Surrounding Biological Examples In Bsen244: Thermodynamics Of Biological Systems, Forrest M. Kievit

UNL Faculty Course Portfolios

Thermodynamics is a course required in many engineering disciplines as it covers concepts utilized in many upper level engineering courses. In the Biological Systems Engineering Department at the University of Nebraska – Lincoln, this course, in a way, acts as a gateway to the major since this will be one of the first classes where the students must apply and hone their problem-solving skills. This course was developed to allow students in the department to have access to a thermodynamics course that relates to their major area of interest – biological systems. However, many concepts in thermodynamics do not have …

Bioc 321: Elements Of Biochemistry – A Peer Review Of Teaching Project Benchmark Portfolio, Jing Zhang

UNL Faculty Course Portfolios

The benchmark portfolio of Biochemistry 321, Elements of Biochemistry, aimed to provide a broad overview for this large-enrollment class for non-biochemistry majors. This course was delivered in a blended format, and the learning objectives were aligned with the American Society of Biochemistry and Molecular Biology (ASBMB) foundational concepts and skills. Classroom response system iClicker was employed and Think-Pair-Share method was utilized to facilitate the in-class discussion and group-learning. Additional activities include the 3D molecular models for visualizing and hands-on learning of the structure-function relationship concept, and practicing problem-solving through the end-of-chapter essay questions. Data analysis suggested that the iClicker response …

Peer Review Of Teaching Benchmark Portfolio For Soil 477/877: Great Plains Field Pedology, Judith Turk

UNL Faculty Course Portfolios

Pedology is a field that focuses on soil morphology, genesis, classification, and mapping. Students in pedology must learn to be keen observers, who are able to accurately evaluate the characteristics of the soil. This portfolio focuses on efforts to improve students’ skills at describing soil color, texture, and morphologic features.

Slpa 985: A Peer Review Of Teaching Benchmark Portfolio, Judy Harvey

UNL Faculty Course Portfolios

My target course for the Peer Review of Teaching (PRT) Project was SLPA 985 Traumatic Brain Injury (TBI). It is offered each spring in the Department of Special Education and Communication Disorders at the University of Nebraska – Lincoln. This course is intended for graduate level speech language pathology (SLP) students. I have over twenty years of experience as a practicing speech language pathologist in a rehabilitation hospital. Now, as an assistant Professor of Practice, my role is to integrate academic learning with practical experience. I am confident in my skills as a practitioner and motivated to share my knowledge, …

Fdst 396 – Preventive Controls For Animal Food, Andreia Bianchini

UNL Faculty Course Portfolios

This portfolio is a benchmark for the course Preventive Controls for Animal Food, which was offered for the first time in Spring 2019. The objectives of this course were (1) to provide students with the ability to distinguish between Current Good Manufacturing Practices (cGMPs), other prerequisite programs, preventive controls, and where they fit into the regulatory framework of the Food Safety Modernization Act – Preventive Controls for Animal Food; (2) to help students understand the hazard analysis process and resources to help conduct such analysis; and (3) to teach students the needed concepts to build a food safety plan. This …

Attainment And Maintenance Of Pubertal Cyclicity May Predict High A4 Cows With Reduced Fertility, Sarah Nafziger

Department of Animal Science: Dissertations, Theses, and Student Research

Puberty attainment was investigated in heifers. Blood samples were collected from weaning until breeding during 6 years from heifers born in 2012-2017. Plasma progesterone concentrations ≥ 1 ng/ml were used to indicate cyclicity, and heifers were categorized into one of four puberty groups using SAS: 1) Early heifers reached puberty before March 12 and cycled continuously during the sampling period, 2) Typical heifers reached puberty on or after March 12 and cycled continuously, 3) Start-Stop heifers had at least one occurrence of progesterone ≥ 1 ng/ml but discontinued cycling during the sampling period, and 4) Non-Cycling heifers had no occurrence …

Insect Profiles, Eric Honerlaw

Department of Entomology: Distance Master of Science Projects

Profiled species: Aerial Yellow Jacket • American Carrion Beetle • Black Imported Fire Ant • Blue Mud Dauber • Camel Cricket • Case Making Clothes Moth - Done • Colorado Potato Beetle • Dark Eyed Fruit Fly • Downy Yellow Jacket • Eastern Treehole Mosquito • European Hornet • Evergreen Bagworm • Four-Lined Silverfish • Fruit Fly • German Yellow Jacket • Gray Silverfish • Great Golden Digger Wasp2 • Ground Yellow Jacket • Hister Beetle • Kissing Bug • Larder Beetle • Larger Yellow Ant • Lesser House Fly • Margined Blister Beetle • Masked Hunter • Mason Bee …

New Biotechnological Approaches To Insect Pest Management And Crop Protection; Gene Editing Approach (Crispr-Cas System)., Anastacia Books

Department of Entomology: Distance Master of Science Projects

Since its introduction into the Integrated Pest Management (IPM) program over 20 years ago, the biotechnological approach for insect pest management, starting with transgenic Bacillus thuringiensis (Bt), appeared to have revolutionized the concept of genetic manipulation approach in insect pest management and crop protection. Transgenic (Bt) crops have offered great benefits in insect management for crop protection but soon after its implementation, the technology started facing the major issue of insect resistance, leading researchers to start pursuing advancements in newer biotechnological approaches to insect pest management, such as Gene Editing (the RNA interference (RNAi); Gene Drives …

Buggin Out: Entomology 101 For High School Juniors And Seniors, Jonathan Wischmeyer

Department of Entomology: Distance Master of Science Projects

Introduction I have been teaching Biology and Environmental Science for the past 20 years here at Summit High School. Over that time I have incorporated insects into some of my teaching practices where it was appropriate. As I have worked my way through the Entomology program at UNL I have found myself wanting to utilize insects more as educational tools.

Materials, Methods and Discussion The purpose of this final project is to design a semester worth of entomology curriculum for high school juniors and seniors attending Summit High School in Breckenridge Colorado. This class would be an elective with the …