Digital Commons Network^™

Bourbon Virus In Wild And Domestic Animals, Missouri, Usa, 2012–2013, Katelin C. Jackson, Thomas Gidlewski, J. Jeffrey Root, Angela M. Bosco-Lauth, R. Ryan Lash, Jessica R. Harmon, Aaron C. Brault, Nicholas A. Panella, William L. Nicholson, Nicholas Komar

United States Department of Agriculture Wildlife Services: Staff Publications

Bourbon virus (BRBV) was first isolated from a febrile patient with a history of tick bites in Bourbon County, Kansas, USA; the patient later died from severe illness in 2014 (1). Several additional human BRBV infections were reported subsequently from the midwestern and southern United States (2). BRBV belongs to the family Orthomyxoviridae, genus Thogotovirus, which is distributed worldwide and includes Araguari, Aransas Bay, Dhori, Jos, Thogoto, and Upolu viruses (1,3). Thogoto and Dhori viruses have been associated with human disease (4–6). Viruses within the genus Thogotovirus have been associated with hard or soft ticks (7). Recent studies suggest that …

Public Access For Pheasant Hunters: Understanding An Emerging Need, Lyndsie S. Wszola, Anastasia E. Madsen, Erica F. Stuber, Christopher J. Chizinski, Jeffrey J. Lusk, J. Scott Taylor, Kevin L. Pope, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Ring‐necked pheasant (Phasianus colchicus; i.e., pheasant) hunting participation is declining across North America, reflecting a larger downward trend in American hunting participation and threatening benefits to grassland conservation and rural economies. To stabilize and expand the pheasant hunting population, we must first identify factors that influence pheasant hunter participation. We used an extensive in‐person hunter survey to test the hypothesis that hunter demographics interact with social‐ecological traits of hunting locations to affect hunter decisions, outcomes, and perceptions. We built a series of Bayesian mixed effects models to parse variation in demographics, perceptions, and hunt outcomes of pheasant hunters interviewed at …

Applying Molecular Communication Theory To Multi-Scale Integrated Models Of Biological Pathways, Zahmeeth Sakkaff, Bige Deniz Unluturk, Massimiliano Pierobon

School of Computing: Faculty Publications

The natural communication ability of cells is explored in this paper by providing preliminary results in the estimation of the Mutual Information (MI) of signaling pathway communication channels. These results, based on an application of Molecular Communication (MC) and information theory concepts to multi-scale integrated Flux-Balance Analysis (iFBA) models are a first step to evaluate the potential of cells and their biochemical processes as a substrate for enabling engineered MC channels for the future internet of Bio-Nano Things.

Accelerating Scholarly Communication: The Transformative Role Of Preprints, Andrea Chiarelli, Rob Johnson, Emma Richens, Stephen Pinfield

Copyright, Fair Use, Scholarly Communication, etc.

Five take-away messages:

Early and fast dissemination, increased opportunities for feedback and openness are seen as the main benefits of preprints.

The main concerns over preprints are the lack of quality assurance, media potentially reporting inaccurate research and journals rejecting articles if a preprint has been posted.

Twitter has been playing a key enabling role in the current second wave of preprints and preprint servers. It also appears to be the main way researchers are exposed to preprints in the first place.

It is not clear who will be responsible for posting preprints in the long-term – researchers or publishers? …

New Wilson’S Phalarope Nesting Record From The Central Platte River Valley, Mormon Island, Hall County, Nebraska, Andrew J. Caven, Bethany L. Ostrom, Aurora Fowler, Joshua D. Wiese, Kelsey C. King

Nebraska Bird Review

The southeastern portion of the Wilson’s Phalarope’s (Phalaropus tricolor) breeding range encompasses parts of Nebraska (Colwell and Jehl 1994), including the Sandhills and northern Panhandle (Silcock and Jorgensen 2018). Additionally, there have been a number of breeding records from southcentral and southeastern Nebraska within the Rainwater Basin ecoregion since the mid-1990s (Mollhoff 2016, Silcock and Jorgensen 2018). However, there is very little evidence of regular breeding activity in the nearby Central Platte River Valley (CPRV), which spans from Chapman west to Overton, Nebraska, and is considered a globally important area for waterbirds (Johnsgard and Brown 2013, Silcock and Jorgensen 2018). …

Summer Field Report, June - July 2019, W. Ross Silcock

Nebraska Bird Review

There was a lot to ponder this summer, including several notable breeding records of waterbirds, including the 3rd for Canvasback and an “unprecedented” breeding season for Eared Grebe in the Rainwater Basin. Intriguing summer occurrences that might presage or indicate nesting were large numbers of Redhead and Ring-necked Duck in larger wetlands, the 3rd Jun record of Dusky Flycatcher, first Jun record of Baird’s Sparrow, 3rd summer record of Ash-throated Flycatcher, and a Sage Thrasher in Jun in Kimball County. Additional breeding records of interest were the 10 Peregrine Falcons fledged at three Omaha sites, possible nesting by Mississippi Kites …

The Nebraska Bird Review, Volume 87 September 2019 Number 3

Nebraska Bird Review

Summer Field Report, June - July 2019, by W. Ross Silcock …74-95

2018 (30th) Report of the NOU Records Committee, by Mark A. Brogie … 96-109

New Wilson's Phalarope Nesting Record from the Central Platte River Valley, Mormon Island, Hall County, Nebraska by Andrew J. Caven, Bethany Ostrom, Aurora Fowler, Joshua D. Wiese, Kelsey C. King …110-114

Subscription and Organization Information …115

A Least Cost Analysis: Correlative Modeling Of The Chaco Regional Road System, Sean Field, Carrie Heitman, Heather Richards-Rissetto

Department of Anthropology: Faculty Publications

During the ninth through twelfth centuries A.D., Ancestral Pueblo people constructed long, straight roads that interconnected the Chaco regional system across the San Juan Basin of northwestern New Mexico. The intent and use of these features has eluded archaeological consensus, although recent research has reiterated the occurrence of long distance timber importation to Chaco Canyon. To enhance our interpretation of these features we offer a large-scale least cost analysis wherein optimal pathways that are modeled to simulate timber importation are compared to the actual road locations. A series of least cost paths were produced through different energy allocation algorithms, at …

Steering Science Through Output Indicators And Data Capitalism, Ulrich Herb

Copyright, Fair Use, Scholarly Communication, etc.

Since the mid-1920s, a scientist's performance was tracked by using bibliometric information such as the number of publications or their citations. Today, there are unprecedented possibilities for controlling science by analysing data on production and use of scientific information, so that citations only play a subordinate role in the evaluation of science. To illustrate this change, we take a look at the history of the Dutch publishing house Elsevier and its metamorphosis into a research intelligence service provider, because it ideally reflects the new possibilities of logging and controlling science.

Information Resources For Animal Control And Wildlife Damage Management, Stephen M. Vantassel, Michael W. Fall, Serge Lariviére

Wildlife Damage Management Technical Series

A bumper sticker reads, “If you think education is expensive, you oughta try ignorance.” That statement could not be truer in regard to wildlife damage management. Being willing to learn is a critical attitude for everyone involved in wildlife damage management. Since wildlife damage management intersects so many other disciplines, no single person can be an expert in all of them. In addition, the arrival of an invasive species, changes in building practices (e.g., egress windows, ridge vents), or the implementation of new regulations can confound traditional practices and require new control methods. Thus, it is important to provide a …

Predicting Functional Responses In Agro-Ecosystems From Animal Movement Data To Improve Management Of Invasive Pests, Mark Q. Wilber, Sarah M. Chinn, James C. Beasley, Raoul K. Bourghton, Ryan K. Brooks, Stephen S. Ditchkoff, Justin W. Fischer, Steve B. Hartley, Lindsey K. Holmstrom, John C. Kilgo, Jesse S. Lewis, Ryan S. Miller, Nathan P. Snow, Kurt C. Vercauteren, Samantha M. Wisely, Colleen T. Webb, Kim M. Peen

United States Department of Agriculture Wildlife Services: Staff Publications

Functional responses describe how changing resource availability affects consumer resource use, thus providing a mechanistic approach to prediction of the invasibility and potential damage of invasive alien species (IAS). However, functional responses can be context dependent, varying with resource characteristics and availability, consumer attributes, and environmental variables. Identifying context dependencies can allow invasion and damage risk to be predicted across different ecoregions. Understanding how ecological factors shape the functional response in agro-ecosystems can improve predictions of hotspots of highest impact and inform strategies to mitigate damage across locations with varying crop types and availability. We linked heterogeneous movement data across …

Role Of Dietary Flavonoid Compounds In Driving Patterns Of Microbial Community Assembly, Kerry L. Ivey, Andrew T. Chan, Jacques Izard, Aedin Cassidy, Geraint B. Rogers, Eric B. Rimm

Department of Food Science and Technology: Faculty Publications

Flavonoids are a group of polyphenolic dietary compounds found in many different plant-based foods. There is increasing evidence that higher flavonoid intake may be causally linked to a reduced risk of cardiovascular disease and other chronic diseases. The bioactivity and bioavailability of many dietary flavonoids can be influenced by gastrointestinal microbiome metabolism. However, the role that habitual flavonoid intake plays in shaping the human gut microbiome is poorly understood. We describe an application of an ecosystem-based analytic approach to nutritional, microbiome, and questionnaire data from a cohort of more than 240 generally healthy adult males to assess the role of …

Variable Rate Irrigation Of Maize And Soybean In West-Central Nebraska Under Full And Deficit Irrigation, J Burdette Barker, Sandeep Bhatti, Derek M. Heeren, Christopher M.U. Neale, Daran Rudnick

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Variable rate irrigation (VRI) may improve center pivot irrigation management, including deficit irrigation. A remote-sensing-based evapotranspiration model was implemented with Landsat imagery to manage irrigations for a VRI equipped center pivot irrigated field located in West-Central Nebraska planted to maize in 2017 and soybean in 2018. In 2017, the study included VRI using the model, and uniform irrigation using neutron attenuation for full irrigation with no intended water stress (VRI-Full and Uniform-Full treatments, respectively). In 2018, two deficit irrigation treatments were added (VRI-Deficit and Uniform-Deficit, respectively) and the model was modified in an attempt to reduce water balance drift; model …

Landscape Factors That Influence European Starling (Sturnus Vulgaris) Nest Box Occupancy At Nasa Plum Brook Station (Pbs), Erie County, Ohio, Usa, Morgan Pfeiffer, Thomas W. Seamans, Bruce N. Buckingham, Bradley F. Blackwell

United States Department of Agriculture Wildlife Services: Staff Publications

During the last decade at NASA Plum Brook Station (PBS), Erie County, Ohio, United States, there has been a nearly 50% decrease in European Starling (Sturnus vulgaris) occupancy (nests with ≥1 egg) of nest boxes designed to be used by starlings. Increased availability of natural cavities, from invertebrate pests, might have altered nest box occupation rates. It was hypothesized that starling nest box occupation rates would be a function of an index of potentially suitable tree cavities for nesting starlings, the semi-colonial nature of breeding starlings, and access to foraging areas (e.g., mowed lawns near buildings). Specifically, it was predicted …

Pubfair: A Framework For Sustainable, Distributed, Open Science Publishing Services, Tony Ross-Hellauer, Benedikt Fecher, Kathleen Shearer, Eloy Rodrigues

Copyright, Fair Use, Scholarly Communication, etc.

Over the last thirty years, digitally-networked technologies have disrupted traditional media, turning business models on their head and changing the conditions for the creation, packaging and distribution of content. Yet, scholarly communication still looks remarkably as it did in the pre-digital age. The primary unit of dissemination remains the research article (or book in some disciplines), and today’s articles still bear a remarkable resemblance to those that populated the pages of Oldenburg’s Philosophical Transactions 350 years ago. In an age of such disruptive innovation, it is striking how little digital technologies have impacted scholarly publishing; and this is also somewhat …

Neonicotinoid Insecticide Concentrations In Agricultural Wetlands And Associations With Aquatic Invertebrate Communities, Travis J. Schepker, Elisabeth B. Webb, Donald Tillitt, Ted Lagrange

Nebraska Game and Parks Commission: Staff Research Publications

Neonicotinoids are considered a superior insecticide for agricultural pest management, although their impacts on non-target insects is a rising concern. Aside from laboratory and mesocosm studies, limited research has been directed towards the role neonicotinoids may have in structuring aquatic invertebrate communities in field settings. Therefore, we simultaneously collected aquatic invertebrate and surface water samples from 26 wetlands within a highly modified agricultural landscape of Nebraska’s Rainwater Basin during spring 2015. Water samples were tested for six different neonicotinoids, nutrients, and physical properties. Trace levels of clothianidin and imidacloprid were the only neonicotinoids detected, occurring in 85% and 15%, respectively, …

“What Will I Experience In My College Stem Courses?” An Investigation Of Student Predictions About Instructional Practices In Introductory Courses, Clara L. Meaders, Emma S. Toth, A. K. Lane, J. Kenny Shuman, Brian A. Couch, Marilyne Stains, Mackenzie R. Stetzer, Erin Vinson, Michelle K. Smith

School of Biological Sciences: Faculty Publications

The instructional practices used in introductory college courses often differ dramatically from those used in high school courses, and dissatisfaction with these practices is cited by students as a prominent reason for leaving science, technology, engineering, and mathematics (STEM) majors. To better characterize the transition to college course work, we investigated the extent to which incoming expectations of course activities differ based on student demographic characteristics, as well as how these expectations align with what students will experience. We surveyed more than 1500 undergraduate students in large introductory STEM courses at three research-intensive institutions during the first week of classes …

Occupied, Judy Diamond, Tom Floyd, Rebecca Smith, Ann Downer-Hazell, Martin Powell, Nick Poliwko, Angie Fox, Amy Spiegel, Patricia Wonch Hill, Julia Mcquillan

Zea E-Books Collection

Our bodies are home to more microbes than human cells. The balance of helpful to harmful microbes in our bodies can make us sick or healthy. The Biology of Human project focuses on helping people understand themselves by exploring scientific principles that underlie modern research in human biology. Biology of Human is an alliance of science educators, artists, science writers, and biomedical researchers working to increase public understanding about viruses and infectious disease. In this comic, Daniel and Miguel find themselves in the world of the microbes, where they meet the Roid (Bacteroides), Longo biffi (Bifidobacterium longum), E. …

Mitogenome And Nuclear-Encoded Fungicide-Target Genes Of Thecaphora Frezii - Causal Agent Of Peanut Smut, R. S. Arias, Luis I. Cazon, Alicia N. Massa, Brian E. Scheffler, Victor S. Sobolev, Marshall C. Lamb, Mary V. Duke, Sheron A. Simpson, Cinthia Conforto, Juan A. Paredes, Mario I. Buteler, Alejandro M. Rago

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Background: Thecaphora frezii Carranza and Lindquist causes smut disease in peanut (Arachis hypogaea L.) resulting in up to 35% yield losses. Fungicides have shown ineffective in controlling the disease; whereas research on the molecular basis of that fungicide resistance has been hindered because of the lack of genetic information about T. frezii. The goal of this work was to provide molecular information about fungicide-target loci in T. frezii, including its mitochondrial genome (mitogenome) and critical nuclear-encoded genes.

Results: Here we report the complete annotated mitogenome of T. frezii, a 123,773 bp molecule containing the standard 14 genes that form part …

Deep Learning-Based Damage Detection From Aerial Sfm Point Clouds, Mohammad Ebrahim Mohammadi, Daniel P. Watson, Richard L. Wood

Department of Civil and Environmental Engineering: Faculty Publications

Aerial data collection is well known as an efficient method to study the impact following extreme events. While datasets predominately include images for post-disaster remote sensing analyses, images alone cannot provide detailed geometric information due to a lack of depth or the complexity required to extract geometric details. However, geometric and color information can easily be mined from three-dimensional (3D) point clouds. Scene classification is commonly studied within the field of machine learning, where a workflow follows a pipeline operation to compute a series of engineered features for each point and then points are classified based on these features using …

Online Eeg Seizure Detection And Localization, Amirsalar Mansouri, Sanjay P. Singh, Khalid Sayood

Department of Electrical and Computer Engineering: Faculty Publications

Epilepsy is one of the three most prevalent neurological disorders. A significant proportion of patients suffering from epilepsy can be effectively treated if their seizures are detected in a timely manner. However, detection of most seizures requires the attention of trained neurologists-- a scarce resource. Therefore, there is a need for an automatic seizure detection capability. A tunable non-patient-specific, non-seizure-specific method is proposed to detect the presence and locality of a seizure using electroencephalography (EEG) signals. This multifaceted computational approach is based on a network model of the brain and a distance metric based on the spectral profiles of EEG …

Paleoclimate Of The Subtropical Andes During The Latest Miocene, Lauca T Basin, Chile, Melina Feitl, Andrea K. Kern, Amanda Jones, Sherilyn C. Fritz, P. A. Baker, R.M. Joeckel, Wout Salenbien, Debra A. Willard

School of Natural Resources: Faculty Publications

Uplift of the Andean Cordillera during the Miocene and Pliocene produced large-scale changes in regional atmospheric circulation that impacted local ecosystems. The Lauca Basin (northern Chilean Altiplano) contains variably fluvial and lacustrine sedimentary sequences spanning the interval from 8.7 to 2.3 Ma. Field samples were collected from paleo-lacustrine sediments in the basin. Sediments were dated using detrital zircon geochronology on volcanic tuffs, yielding an age range between ~5.57 and 5.44 Ma. These new age constraints provided an opportunity to evaluate changes in the Lauca Basin ecosystem across this dynamic Miocene-Pliocene transition. We employed multiple proxies (lithofacies analysis, diatoms, pollen, and …

Learnfca: A Fuzzy Fca And Probability Based Approach For Learning And Classification, Suraj Ketan Samal

School of Computing: Dissertations, Theses, and Student Research

Formal concept analysis(FCA) is a mathematical theory based on lattice and order theory used for data analysis and knowledge representation. Over the past several years, many of its extensions have been proposed and applied in several domains including data mining, machine learning, knowledge management, semantic web, software development, chemistry ,biology, medicine, data analytics, biology and ontology engineering.

This thesis reviews the state-of-the-art of theory of Formal Concept Analysis(FCA) and its various extensions that have been developed and well-studied in the past several years. We discuss their historical roots, reproduce the original definitions and derivations with illustrative examples. Further, we provide …

The Establishment Risk Of Lycorma Delicatula (Hemiptera: Fulgoridae) In The United States And Globally, Tewodros T. Wakie, Lisa G. Neven, Wee L. Yee, Zhaozhi Lu

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Native to Asia, the spotted lanternfly, Lycorma delicatula (White), is an emerging pest of many commercially important plants in Korea, Japan, and the United States. Determining its potential distribution is important for proactive measures to protect commercially important commodities. The objective of this study was to assess the establishment risk of L. delicatula globally and in the United States using the ecological niche model MAXENT, with a focus on Washington State (WA), where large fruit industries exist. The MAXENT model predicted highly suitable areas for L. delicatula in Asia, Oceania, South America, North America, Africa, and Europe, but also predicted …

Secrecy Capacity And Secure Distance For Diffusion-Based Molecular Communication Systems, Lorenzo Mucchi, Alessio Martinelli, Sara Jayousi, Stefano Caputo, Massimiliano Pierobon

School of Computing: Faculty Publications

The biocompatibility and nanoscale features of Molecular Communication (MC) make this paradigm, based on molecules and chemical reactions, an enabler for communication theory applications in the healthcare at its biological level (e.g., bimolecular disease detection/monitoring and intelligent drug delivery). However, the adoption of MC-based innovative solutions into privacy and security-sensitive areas is opening new challenges for this research field. Despite fundamentals of information theory applied to MC have been established in the last decade, research work on security in MC systems is still limited. In contrast to previous literature focused on challenges, and potential roadmaps to secure MC, this paper …

Evolutionary History Predicts High‐Impact Invasions By Herbivorous Insects, Angela M. Mech, Kathryn A. Thomas, Travis D. Marsico, Daniel A. Herms, Craig R. Allen, Matthew P. Ayres, Kamal J.K. Gandhi, Jessica Gurevitch, Nathan P. Havill, Ruth A. Hufbauer, Andrew M. Liebhold, Kenneth F. Raffa, Ashley N. Schulz, Daniel R. Uden, Patrick C. Tobin

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

1. A long‐standing goal of invasion biology is to identify factors driving highly variable impacts of non‐native species. Although hypotheses exist that emphasize the role of evolutionary history (e.g., enemy release hypothesis & defense‐free space hypothesis), predicting the impact of non‐native herbivorous insects has eluded scientists for over a century.

2. Using a census of all 58 non‐native conifer‐specialist insects in North America, we quantified the contribution of over 25 factors that could affect the impact they have on their novel hosts, including insect traits (fecundity, voltinism, native range, etc.), host traits (shade tolerance, growth rate, wood density, etc.), and …

A Panel Of Protein Kinase Chemosensors Distinguishes Different Types Of Fatty Liver Disease, Jon R. Beck, Fatima Cabral, Karuna Rasineni, Carol A. Casey, Edward N. Harris, Cliff I. Stains

Department of Chemistry: Faculty Publications

The worldwide incidence of fatty liver disease continues to rise, which may account for concurrent increases in the frequencies of more aggressive liver ailments. Given the existence of histologically identical fatty liver disease subtypes, there is a critical need for the identification of methods that can classify disease and potentially predict progression. Herein, we show that a panel of protein kinase chemosensors can distinguish fatty liver disease subtypes. These direct activity measurements highlight distinct differences between histologically identical fatty liver diseases arising from diets rich in fat versus alcohol and identify a previously unreported decrease in p38α activity associated with …

Full Stem Ahead, Shawn Knowlton, Megan Elbel

Honors Program: Expanded Learning Clubs

After school club that introduces students to STEM and builds problem-solving skills through hands-on, interactive activities.

Brangus Cows Have Ovarian Reserve Parameters More Like Brahman Than Angus Cows, Robert A. Cushman, Émerson M. Soares, Hannah K. Yake, Allyson L. Patterson, Shelby L. Rosasco, Joslyn K. Beard, Emmalee J. Northrop, Jerica J.J. Rich, Jeremy R. Miles, Chadwick C. Chase Jr., Michael G. Gonda, George A. Perry, Anthony K. Mcneel, Adam F. Summers

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Bos indicus females have more surface antral follicles than Bos taurus females; however, histological studies demonstrated no difference in total number of primordial follicles between these two biological types of cattle. Primordial follicle density in the ovary was less in Nelore ovaries compared to Angus ovaries, but no studies have examined the primordial follicle density in Bos indicus cross-bred females. It, therefore, was hypothesized that primordial follicle density in the ovary would decrease as percentage Bos indicus increased. Ovaries were collected from cross-bred Angus (n=32, no Bos indicus influence), Brangus (n=15), or Brahman (n=9) …

Comparison Of The Efficacy Of Four Drug Combinations For Immobilization Of Wild Pigs, Christine K. Ellis, Morgan E. Wehtje, Lisa L. Wolfe, Peregrine L. Wolff, Clayton D. Hilton, Mark C. Fisher, Shari Green, Michael P. Glow, Joeseph M. Halseth, Michael J. Lavelle, Nathan P. Snow, Eric H. Vannatta, Jack C. Rhyan, Kurt C. Vercauteren, William R. Lance, Pauline Nol

United States Department of Agriculture Wildlife Services: Staff Publications

Field immobilization of native or invasive wild pigs (Sus scrofa) is challenging. Drug combinations commonly used often result in unsatisfactory immobilization, poor recovery, and adverse side effects, leading to unsafe handling conditions for both animals and humans. We compared four chemical immobilization combinations, medetomidine–midazolam–butorphanol (MMB), butorphanol–azaperone–medetomidine (BAM™), nalbuphine–medetomidine–azaperone (NalMed-A), and tiletamine– zolazepam–xylazine (TZX), to determine which drug combinations might provide better chemical immobilization of wild pigs. We achieved adequate immobilization with no post-recovery morbidity withMMB. Adequate immobilization was achieved with BAM™; however, we observed post-recovery morbidity. Both MMB and BAM™ produced more optimal results relative to body temperature, recovery, and …