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Estimating The Maximum Rise In Temperature According To Climate Models Using Abstract Interpretation, Peter Revesz, Robert J. Woodward

School of Computing: Faculty Publications

Current climate models are complex computer programs that are typically iterated time-step by time-step to predict the next set of values of the climate-related variables. Since these iterative methods are necessarily computed only for a fixed number of iterations, they are unable to answer the natural question whether there is a limit to the rise of global temperature. In order to answer that question we propose to combine climate models with software verification techniques that can find invariant conditions for the set of program variables. In particular, we apply the constraint database approach to software verification to find that the …

Measuring Spatial And Temporal Shifts In Forest Structure And Composition In T High Elevation Beech Forests In Response To Beech Bark Disease In Great Smoky Mountains National Park, Lee Rubmle, Glenn Taylor, Joshua B. Grinath, Ashley B. Morris

United States National Park Service: Publications

Exotic forest pests and pathogens are among the most serious environmental threats to millions of hectares of forested land worldwide. Beech Bark Disease (BBD) is a non-native, pathogenic complex consisting of associations between scale insects and fungi. First confirmed in Great Smoky Mountains National Park (GRSM) in 1986, this complex has since threatened local high elevation beech forests, which are G-1 ranked (critically imperiled) forest communities where American beech (Fagus grandifolia Ehrh.) is a foundational tree species. In 1994, GRSM initiated the BBD Monitoring Protocol at 10 high elevation beech forest plots in the Park. The plots were sampled biennially …

Optimal Bait Density For Delivery Of Acute Toxicants To Vertebrate Pests, Kim M. Pepin, Nathan P. Snow, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Oral baiting is a fundamental method for delivering toxicants to pest species. Planning baiting strategies is challenging because bait-consumption rates depend on dynamic processes including space use and demographics of the target species. To determine cost-effective strategies for optimizing baiting, we developed a spatially explicit model of population dynamics using field-based measures of wild-pig (Sus scrofa) space use, bait consumption, and mortality probabilities. The most cost-effective baiting strategy depended strongly on the population reduction objective and initial density. A wide range of baiting strategies were cost-effective when the objective was 80% population reduction. In contrast, only a narrow range of …

Wild Ruminants As Reservoirs Of Domestic Livestock Gastrointestinal T Nematodes, Carly D. Barone, Janneke Wit, Eric P. Hoberg, John S. Gilleard, Dante S. Zarlenga

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Gastrointestinal nematode (GIN) infections in cattle cause appetite suppression which leads to poor feed conversion, reduced weight gain and reduced milk production. Overuse and exclusive reliance on anthelmintic drugs has resulted in widespread resistance in many parasitic nematode species infecting livestock making control increasingly difficult. Wild ruminants are competent hosts of a number of nematode species that typically infect and are best adapted for cattle, sheep, and goats. Thus, the potential exists for wild ruminants to act as reservoirs in the translocation of domestic GIN, including those carrying anthelmintic resistance mutations as well as susceptible genotypes. The potential for parasite …

Brodifacoum Residues In Fish Three Years After An Island-Wide Rat Eradication Attempt In The Tropical Pacific, Shane R. Siers, Aaron B. Shiels, Steven F. Volker, Kristen Rex, William C. Pitt

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive rats are known to threaten natural resources and human health and safety. Island-wide rat eradication attempts have been increasing in number and scale during the past several decades, as has the frequency of eradication success. The most common method to remove all rats from an island is to broadcast anticoagulant rodenticide bait into every rat’s home range on the island. Broadcast of toxicants can put humans and other nontarget species in marine and terrestrial environments at risk of exposure. The persistence of anticoagulant residues is somewhat unknown, particularly in marine environments. Three years after ~ 18,000 kg of 25 …

Enhancing Hybrid Prediction In Pearl Millet Using Genomic And/Or Multi- Environment Phenotypic Information Of Inbreds, Diego Jarquin, Reka Howard, Zhikai Liang, Shashi K. Gupta, James C. Schnable, Jose Crossa

Department of Agronomy and Horticulture: Faculty Publications

Genomic selection (GS) is an emerging methodology that helps select superior lines among experimental cultivars in plant breeding programs. It offers the opportunity to increase the productivity of cultivars by delivering increased genetic gains and reducing the breeding cycles. This methodology requires inexpensive and sufficiently dense marker information to be successful, and with whole genome sequencing, it has become an important tool in many crops. The recent assembly of the pearl millet genome has made it possible to employ GS models to improve the selection procedure in pearl millet breeding programs. Here, three GS models were implemented and compared using …

Do People Really Become More Conservative As They Age?, Johnathan C. Peterson, Kevin Smith, John Hibbing

Department of Political Science: Faculty Publications

Folk wisdom has long held that people become more politically conservative as they grow older, although several empirical studies suggest political attitudes are stable across time. Using data from the Michigan Youth-Parent Socialization Panel Study, we analyze attitudinal change over a major portion of the adult life span.We document changes in party identification, self-reported ideology, and selected issue positions over this time period and place these changes in context by comparing them with contemporaneous national averages. Consistent with previous research but contrary to folk wisdom, our results indicate that political attitudes are remarkably stable over the long term. In contrast …

Predicting The Potential Distribution Of Amblyomma Americanum (Acari: Ixodidae) Infestation In New Zealand, Using Maximum Entropy‑Based Ecological Niche Modelling, R. K. Raghavan, A. C.G. Heath, K. E. Lawrence, R. R. Ganta, A. T. Peterson, W. E. Pomroy

Harold W. Manter Laboratory of Parasitology: Library Materials

Although currently exotic to New Zealand, the potential geographic distribution of Amblyomma americanum (L.), the lone star tick, was modelled using maximum entropy (Max- Ent). The MaxEnt model was calibrated across the native range of A. americanum in North America using present-day climatic conditions and occurrence data from museum collections. The resulting model was then projected onto New Zealand using both present-day and future climates modelled under two greenhouse gas emission scenarios, representative concentration pathways (RCP) 4.5 (low) and RCP 8.5 (high). Three sets of WorldClim bioclimatic variables were chosen using the jackknife method and tested in MaxEnt using different …

The Effects Of Asparagus Racemosus Supplementation Plus 8 Weeks Of Resistance Training On Muscular Strength And Endurance, John Paul V. Anders, Joshua L. Keller, Cory M. Smith, Ethan C. Hill Phd, Terry J. Housh, Richard J. Schmidt, Glen O. Johnson

Department of Nutrition and Health Sciences: Faculty Publications

Previous studies have demonstrated that ayurvedic ingredients exhibit ergogenic (performance enhancing) properties, however, no previous studies have examined the ergogenic potential of Asparagus racemosus. The purpose of the present study was to examine the ergogenic efficacy of supplementation with 500 mg·d−1 of A. racemosus during bench press training. Eighteen recreationally trained men (mean ± SD; age = 20.4 ± 0.5 yrs; height = 179.7 ± 1.5 cm; weight = 84.7 ± 5.7 kg) were randomly assigned either 500 mg·d−1 of A. racemosus (n = 10) or placebo (n = 8). An overlapping sample of 10 participants were used to determine …

Insights About Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): What Is Tetrabothrius Jagerskioeldi?, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

Tetrabothriid cestodes are characteristic helminths that infect species of seabirds globally. We begin with the exploration of the diversity of tapeworms of the genus Tetrabothrius Rudolphi, 1819 (Eucestoda: Tetrabothriidae), some of which are distributed among seabirds of the family Alcidae (Charadriiformes) at boreal to higher latitudes of Holarctic seas. During the course of 2 decades of field inventory from 1975 through the early 1990s (in addition to earlier collections assembled by Robert L. Rausch and colleagues in Alaska initiated in the late 1940s), an extensive series of tapeworm specimens attributable to species of Tetrabothrius was recovered from seabirds across the …

Methods Of Making And Using Lignin Derivatives, Mark Alan Helle, Chin Li Cheung

Department of Chemistry: Faculty Publications

Materials and methods for preparing reactive lignin and for preparing a bio-based adhesive are described herein.

This disclosure generally relates to methods of making and using reactive lignin. This disclosure also generally relates to methods of making and using bio-based adhesives. Lignin is the second most abundant natural polymer behind cellulose, yet lignin has very little commercial value despite years of research. Lignin is one of the major components of the cell wall in wood and other plant based materials such as hemp or crop wastes. It is produced in enormous quantities each year, primarily as a by-product in the …

Long-Term Ecological Research In Southern Brazil Grasslands: Effects Of Grazing Exclusion And Deferred Grazing On Plant And Arthropod Communities, Pedro M.A. Ferreira, Bianca O. Andrade, Luciana R. Podgaiski, Amanda C. Dias, Valerio D. Pillar, Gerhard E. Overbeck, Milton De S. Mendonca Jr., Ilsi I. Boldrini

Department of Agronomy and Horticulture: Faculty Publications

Grazing exclusion may lead to biodiversity loss and homogenization of naturally heterogeneous and species-rich grassland ecosystems, and these effects may cascade to higher trophic levels and ecosystem properties. Although grazing exclusion has been studied elsewhere, the consequences of alleviating the disturbance regime in grassland ecosystems remain unclear. In this paper, we present results of the first five years of an experiment in native grasslands of southern Brazil. Using a randomized block experimental design, we examined the effects of three grazing treatments on plant and arthropod communities: (i) deferred grazing (i.e., intermittent grazing), (ii) grazing exclusion and (iii) a control under …

A Close And Supportive Interparental Bond During Pregnancy Predicts Greater Decline In Sexual Activity From Pregnancy To Postpartum: Applying An Evolutionary Perspective, Tierney K. Lorenz, Erin L. Ramsdell, Rebecca L. Brock

Department of Psychology: Faculty Publications

A common topic for advice given to parents after childbirth – both from relationship experts and popular media – is how to “bounce back” to one’s pre-pregnancy sexuality, with warnings that postpartum declines in sexual frequency will take a serious toll on one’s relationship. However, these admonishments may not accurately reflect the ways in which the unique reproductive context of pregnancy and the postpartum transition alter associations between sexual frequency and relationship quality. Evolutionary perspectives on reproductive strategies would suggest that in the postpartum context, decreased sexual activity would help target parental investment in the current offspring (rather than creating …

Editorial: New Insights Into Mechanisms Of Epigenetic Modifiers In Plant Growth And Development, Ming Luo, Gabino Ríos, Tomasz Jacek Sarnowski, Shoudong Zhang, Nitin Mantri, Jean-Benoit Charron, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

In eukaryotic cells, chromatin, a highly dynamic nucleoprotein complex, plays a critical role in controlling gene expression notably by regulating the interaction between transcription factors and regulatory elements. The structure of the chromatin is determined by epigenetic mechanisms, including DNA methylation, histone modifications, and chromatin remodeling. A growing body of evidence indicates that epigenetic regulations are involved in plant adaptation to environmental stresses, and in plant development, including flowering control, fruit and root development, as well as seed maturation and germination. Furthermore, epigenetic mechanisms have the potential to stabilize cell identity and maintain tissue organization. Hence, epigenetic diversity is now …

Microalgae As A Promising And Sustainable Nutrition Source For Managed Honey Bees, Vincent A. Ricigliano

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Managed honey bee colony losses are attributed to a number of interacting stressors, but many lines of evidence point to malnutrition as a primary factor. Commercial beekeepers have become increasingly reliant on artificial pollen substitute diets to nourish colonies during periods of forage scarcity and to bolster colony size before pollination services. These artificial diets may be deficient in essential macronutrients (proteins, lipids, prebiotic fibers), micronutrients (vitamins, minerals), and antioxidants. Therefore, improving the efficacy of pollen substitutes can be considered vital to modern beekeeping. Microalgae are prolific sources of plant‐based nutrition with many species exhibiting biochemical profiles that are comparable …

Proceedings Of The Fifteenth North American Crane Workshop, Jane E. Austin, Richard P. Urbanek, Megan E. Brown

Proceedings of the North American Crane Workshop

Proceedings of the Fifteenth North American Crane Workshop (2020) edited by Jane E. Austin, Richard P. Urbanek, and Megan E. Brown.

Yield And Quality In Purple-Grained Wheat Isogenic Lines, Alexey Morgounov, Yasar Karaduman, Beyhan Akin, Sinan Aydogan, Peter Stephen Baenziger, Madhav Bhatta, Vladimir Chudinov, Susanne Dreisigacker, Velu Govindan, Safure Güler, Carlos Guzman, Ajit Nehe, Rachana Poudel, Devin J. Rose, Elena Gordeeva, Vladimir Shamanin, Kemal Subasi, Yuriy Zelenskiy, Elena Khlestkina

Department of Agronomy and Horticulture: Faculty Publications

Breeding programs for purple wheat are underway in many countries but there is a lack of information on the effects of Pp (purple pericarp) genes on agronomic and quality traits in variable environments and along the product chain (grain-flour-bread). This study was based on unique material: two pairs of isogenic lines in a spring wheat cv. Saratovskaya-29 (S29) background differing only in Pp genes and grain color. In 2017, seven experiments were conducted in Kazakhstan, Russia, and Turkey with a focus on genotype and environment interaction and, in 2018, one experiment in Turkey with a focus on grain, flour, and …

The Land Variational Ensemble Data Assimilation Framework: Lavendar V1.0.0, Ewan Pinnington, Tristan Quaife, Amos Lawless, Karina Williams, Tim Arkebauer, David Scoby

Department of Agronomy and Horticulture: Faculty Publications

The Land Variational Ensemble Data Assimilation Framework (LAVENDAR) implements the method of fourdimensional ensemble variational (4D-En-Var) data assimilation (DA) for land surface models. Four-dimensional ensemble variational data assimilation negates the often costly calculation of a model adjoint required by traditional variational techniques (such as 4D-Var) for optimizing parameters or state variables over a time window of observations. In this paper we present the first application of LAVENDAR, implementing the framework with the Joint UK Land Environment Simulator (JULES) land surface model. We show that the system can recover seven parameters controlling crop behaviour in a set of twin experiments. We …

Nitrate Removal From Groundwater Using Immobilized Heterotrophic Algae, Sara Mollamohammada, Ashraf Aly Hassan, Mohamed Dahab

Department of Civil and Environmental Engineering: Faculty Publications

The treatment efficiency of Chlorella sorokiniana and Scenedesmus species, immobilized in sodium alginate, was evaluated for removing nitrate from groundwater. The experiments were performed initially in batch mode and the best-performing conditions were replicated in sequencing batch reactor mode. S. sp. showed a higher nitrate uptake in short term than C. sorokiniana. Immobilized S. sp. and C. sorokiniana cells showed 90% nitrate removal in 9 and 12 days, respectively. The optimal ratio of algal beads/water was found to be 12.5% (v:v). Comparatively, suspended S. sp. cells were able to remove only up to 35% of nitrate in 8 …

Adaptive Capacity In Ecosystems, David G. Angeler, Hannah Fried-Petersen, Craig R. Allen, Ahjond Garmestani, Dirac L. Twidwell Jr, H.E. Birgé, W. Chuang, V. M. Donovan, T. Eason, C.P. Roberts, S.M. Sundstrom, C.L. Wonkka

Department of Agronomy and Horticulture: Faculty Publications

Understanding the adaptive capacity of ecosystems to cope with change is crucial to management. However, unclear and often confusing definitions of adaptive capacity make application of this concept difficult. In this paper, we revisit definitions of adaptive capacity and operationalize the concept. We define adaptive capacity as the latent potential of an ecosystem to alter resilience in response to change. We present testable hypotheses to evaluate complementary attributes of adaptive capacity that may help further clarify the components and relevance of the concept. Adaptive sampling, inference and modeling can reduce key uncertainties incrementally over time and increase learning about adaptive …

The Abyssinian Art Of Louis Agassiz Fuertes In The Field Museum, Paul A. Johnsgard

Zea E-Books Collection

This book documents the paintings and drawings executed by Louis Agassiz Fuertes during the Field Museum of Natural History’s seven-month expedition to Ethiopia (Abyssinia) in 1926–27. During that time Fuertes completed 70 field watercolors that illustrate 55 species of birds and four species of mammals. He also executed 34 pencil drawings, which illustrate 13 species of mammals and 11 species of birds, plus numerous miscellaneous sketches and small watercolors. This book identifies and describes the biology of all 69 species of birds and mammals illustrated by Fuertes and includes 32 color reproductions of Fuertes’s watercolors that were published as a …

Alpha-Linolenic Acid-Enriched Butter Promotes Fatty Acid Remodeling And Thermogenic Activation In The Brown Adipose Tissue, Mikyoung You, Rong Fan, Judy Kim, Seung-Ho Shin, Soonkyu Chung

Department of Nutrition and Health Sciences: Faculty Publications

Supplementation with n-3 long-chain (LC) polyunsaturated fatty acids (PUFA) is known to promote thermogenesis via the activation of brown adipose tissue (BAT). Agricultural products that are biofortified with α-linolenic acid (ALA), the precursor of n-3 LC PUFA, have been launched to the market, but their impact on BAT function is unknown. This study aimed to evaluate the effects of ALA-biofortified butter on lipid metabolism and thermogenic functions in the BAT. C57BL/6 mice were fed a high-fat diet containing ALA-biofortified butter (n3Bu, 45% calorie from fat) for ten weeks in comparison with the isocaloric high-fat diets prepared from conventional butter or …

Informal Science Experiences Among Urban And Rural Youth: Exploring Differences At The Intersections Of Socioeconomic Status, Gender And Ethnicity, Patricia Wonch Hill, Julia Mcquillan, Eileen A. Hebets, Amy N. Spiegel, Judy Diamond

Department of Sociology: Faculty Publications

The current study explores patterns of informal science experiences among youth in urban and rural middle schools by gender and socioeconomic status. Data come from surveys in two Midwestern middle schools, one in a mid-sized city, and the other in a rural-remote town. We asked about participation in informal science activities (e.g. visiting zoos or museums, or watching shows about science) and if youth had participated in science-focused clubs in the last 12 months (e.g. after-school science clubs, 4-H, scouts). Rural youth reported lower rates of participation in after-school science clubs and a greater desire to participate in after-school science …

Local Adaptation Constrains Drought Tolerance In A Tropical Foundation Tree, Kasey E. Barton, Casey Jones, Kyle F. Edwards, Aaron B. Shiels, Tiffany Knight

United States Department of Agriculture Wildlife Services: Staff Publications

1. Plant species with broad climatic ranges might be more vulnerable to climate change than previously appreciated due to intraspecific variation in climatic stress tolerance. In tropical forests, drought is increasingly frequent and severe, causing widespread declines and altering community dynamics. Yet, little is known about whether foundation tropical trees vary in drought tolerance throughout their distributions, and how intraspecific variation in drought tolerance might contribute to their vulnerability to climate changE.
2. We tested for local adaptation in seedling emergence and establishment with a full-factorial reciprocal transplant experiment including 27 populations and 109,350 seeds along a 3,500 mm precipitation gradient for …

Soybean Nodule-Associated Non-Rhizobial Bacteria Inhibit Plant Pathogens And Induce Growth Promotion In Tomato, Serkan Tokgöz, Dilip K. Lakshman, Mahmoud H. Ghozlan, Hasan Pinar, Daniel P. Roberts, Amitava Mitra

Department of Plant Pathology: Faculty Publications

The root nodules are a unique environment formed on legume roots through a highly specific symbiotic relationship between leguminous plants and nodule-inducing bacteria. Previously, Rhizobia were presumed to be the only group of bacteria residing within nodules. However, recent studies discovered diverse groups of bacteria within the legume nodules. In this report soybean nodule-associated bacteria were studied in an effort to identify beneficial bacteria for plant disease control and growth promotion. Analysis of surface-sterilized single nodules showed bacterial diversity of the nodule microbiome. Five hundred non-rhizobial colonies from 10 nodules, 50 colonies per nodule, were tested individually against the tomato …

Age Discrimination And Academic Labor Markets, Sam Allgood

Department of Economics: Faculty Publications

In a sample of Canadian Ph.D.’s, Warman and Worswick (2010) report that forty-two percent obtained their degree at thirty-four years of age or older. One implication is that those starting their academic career vary in age. As a result, academic labor markets provide a somewhat unique way to investigate the outcomes of workers of different age with similar work experience. This study uses a national sample of over 9,000 faculty to look at the relationship between age at the time a person earns their degree and income. Older individuals are less likely to attend graduate programs in Carnegie Research I …

Swine Slurry Characteristics As Affected By Selected Additives And Disinfectants, Jon Duerschner, Shannon L. Bartelt-Hunt, Kent Eskridge, John E. Gilley, Xu Li, Amy M. Schmidt, Daniel D. Snow

Nebraska Water Center: Faculty Publications

Current swine industry practice is to house animals in confinement facilities which capture and store feces and urine as slurry in pits below the production area. Additives and disinfectants may be introduced into the manure pits. This study was conducted to measure the effects of additives and disinfectants on temporal changes in swine slurry characteristics. Slurry from a commercial swine production facility in southeast Nebraska, USA was collected and transferred to 57 L reactors located within a greenhouse. Selected additives and disinfectants were added to the reactors and physical properties, chemical characteristics, and antibiotic concentrations were monitored for 40 days. …

Optfill: A Tool For Infeasible Cycle-Free Gapfilling Of Stoichiometric Metabolic Models, Wheaton L. Schroeder, Rajib Saha

Mid-America Transportation Center: Final Reports and Technical Briefs

Stoichiometric metabolic modeling, particularly genome-scale models (GSMs), is now an indispens- able tool for systems biology. The model reconstruction process typically involves collecting informa- tion from public databases; however, incomplete systems knowledge leaves gaps in any reconstruc- tion. Current tools for addressing gaps use databases of biochemical functionalities to address gaps on a per-metabolite basis and can provide multiple solutions but cannot avoid thermodynami- cally infeasible cycles (TICs), invariably requiring lengthy manual curation. To address these limita- tions, this work introduces an optimization-based multi-step method named OptFill, which performs TIC-avoiding whole-model gapfilling. We applied OptFill to three fictional prokaryotic models …

Niche Modeling Reveals Life History Shifts In Birds At La Brea Over The Last Twenty Millennia, Robert M. Zink, Sebastian Botero-Canola, Helen Martinez, Katelyn M. Herzberg

School of Natural Resources: Faculty Publications

A species presence at a particular site can change over time, resulting in temporally dynamic species pools. Ecological niche models provide estimates of species presence at different time intervals. The avifauna of La Brea includes approximately 120 species dating to approximately 15,000 years ago. Niche models predicted presence at the Last Glacial Maximum for over 90% of 89 landbird species. This confirms that niche modeling produces sensible range estimates at the Last Glacial Maximum. For 97 currently local species that are as yet undocumented at La Brea over 90% were predicted to occur; absence is due to insufficient study, lack …

An Unseen Synchrony Or Recurrent Resource Pulse Opportunity? Linking Fisheries With Aeroecology, Henry H. Hansen, Mark Pegg, Matthew Van Den Broeke, Doug Watkinson, Eva C. Enders

School of Natural Resources: Faculty Publications

Understanding insect and fish interactions from a spatial and temporal perspec-tive can have implications on large-scale phenology in freshwater systems, yet current information is limited. We employed a novel approach of combining information from acoustic telemetry for six freshwater fish species and weather radar to assess the phenology of mayfly emergence and foraging patterns of freshwater fish. We hypothesized that freshwater fish conduct synchronous movements with annual mayfly hatches as a pulse resource opportunity. Gener-alized additive models were developed to assess movement distance as a func-tion of species and time; before, during, and after annual mayfly hatch events. A cross-section …