Open Access. Powered by Scholars. Published by Universities.®

Digital Commons Network™

Open Access. Powered by Scholars. Published by Universities.®

University of Nebraska - Lincoln

Discipline
Keyword
Publication Year
Publication
Publication Type
File Type

Articles 1501 - 1530 of 40084

Full-Text Articles in Entire DC Network

Ecological Impacts Of Restoring Fire-Grazing Interaction In Sandhills Prairie Through Patch-Burn Grazing, Nolan P. Sipe Dec 2023

Ecological Impacts Of Restoring Fire-Grazing Interaction In Sandhills Prairie Through Patch-Burn Grazing, Nolan P. Sipe

School of Natural Resources: Dissertations, Theses, and Student Research

A Collaborative Adaptive Management (CAM) Project was started at the University of Nebraska in 2020 to address some of the key uncertainties related to the management of grasslands in the Nebraska Sandhills through stakeholder driven experiments and the adaptive management cycle. Patch-burn grazing was selected by CAM as a management tool to generate heterogeneity across the landscape and promote biodiversity while balancing economic and ecological trade-offs. The patch-burn grazing system was implemented with controlled burns in May of 2022 and March of 2023. Other parties in CAM will be examining the impact that patch-burn grazing has on forage and livestock …


Population Demography Of A Glacial-Relict Stream Fish Mediated Via Anthropogenic Alteration, Joseph M. Spooner Dec 2023

Population Demography Of A Glacial-Relict Stream Fish Mediated Via Anthropogenic Alteration, Joseph M. Spooner

School of Natural Resources: Dissertations, Theses, and Student Research

Northern Pearl Dace Margariscus nachtriebi are a small-bodied glacial-relict fish species of greatest conservation need (SGCN) found throughout Canada and the northern United Sates. Their distribution within the Nebraska Sandhills Ecoregion is isolated from the northern core distribution of the species following the last glaciation period approximately 18,000 years ago. Headwater streams within the Nebraska Sandhills Ecoregion are predominately groundwater fed and provide the cool water temperatures needed to support Northern Pearl Dace and other glacial-relict SGCN. Headwater streams within the Nebraska Sandhills Ecoregion have been geomorphically altered through anthropogenic processes such as channelization whereby habitat homogenization has occurred. Evidence …


Human Dimensions Of Woody Encroachment Management In Nebraska, Emily Rowen Dec 2023

Human Dimensions Of Woody Encroachment Management In Nebraska, Emily Rowen

School of Natural Resources: Dissertations, Theses, and Student Research

Woody plant encroachment (WPE) is a social-ecological problem that will challenge conservation professionals and agricultural producers to adapt their management strategies. This research first examined WPE from the perspective of individual conservation professionals through an online survey. Conservation professionals’ attitudes about adaptation to vegetation transitions, such as WPE, were of interest because these attitudes are one measure of how prepared this group is to respond to WPE. Hypothesized predictors of adaptation attitude were tested through linear regression modeling. These predictors included ecological change, observation of WPE, or risk perception. It was found that risk perception was the strongest predictor of …


Habitat Heterogeneity In Nebraska Streams And Distribution Prediction For Tier-1 Cyprinids Using Multi-Scale Modeling Of Fluvial And Landscape Features, Connor P. Hart Dec 2023

Habitat Heterogeneity In Nebraska Streams And Distribution Prediction For Tier-1 Cyprinids Using Multi-Scale Modeling Of Fluvial And Landscape Features, Connor P. Hart

School of Natural Resources: Dissertations, Theses, and Student Research

Multiscale environmental processes determine in-stream habitat conditions which drive species distributions. Habitat constitutes the physical template upon which ecological processes occur and species conduct life stage activities. Habitat heterogeneity promotes biodiversity of aquatic systems. Stream classification informs freshwater conservation by providing a useful framework to account for habitat heterogeneity, often based on landscape regions of similar environmental processes. A greater understanding of landscape-based classification frameworks as means to classify stream systems may improve understanding of drivers of biodiversity. Using Nebraska as a case study, on a statewide scale, objectives were 1) to characterize habitat availability for several at-risk fish species, …


The Influence Of Invasive Species On Fishers’ Satisfactions, Caroline M. Laplante Dec 2023

The Influence Of Invasive Species On Fishers’ Satisfactions, Caroline M. Laplante

School of Natural Resources: Dissertations, Theses, and Student Research

Invasives species are prevalent and widespread in North America. Outdoor recreational activities, such as fishing, introduce a point in which humans may interact with invasive species and have to adapt their own behaviors. Bigheaded carp in the Missouri River below Gavin’s Point Dam are a group of invasive fish species that were thought to be negatively relating to recreational fishers’ satisfactions. Using a content analysis and an importance-grid, we conclude that invasive species do not strongly relate to recreational paddlefish fishers’ satisfactions. Paddlefish fishers represent a small sub-set of recreational fishers in Nebraska and South Dakota. The content analysis revealed …


Development Of A Machine Learning System For Irrigation Decision Support With Disparate Data Streams, Eric Wilkening Dec 2023

Development Of A Machine Learning System For Irrigation Decision Support With Disparate Data Streams, Eric Wilkening

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

In recent years, advancements in irrigation technologies have led to increased efficiency in irrigation applications, encompassing the adoption of practices that utilize data-driven irrigation scheduling and leveraging variable rate irrigation (VRI). These technological improvements have the potential to reduce water withdrawals and diversions from both groundwater and surface water sources. However, it is vital to recognize that improved application efficiency does not necessarily equate to increased water availability for future or downstream use. This is particularly crucial in the context of consumptive water use, which refers to water consumed and not returned to the local or sub-regional watershed, representing a …


In Situ Water Sensing Systems: Research On Advancements In Environmental Monitoring, Abigail Seibel Dec 2023

In Situ Water Sensing Systems: Research On Advancements In Environmental Monitoring, Abigail Seibel

Honors Program: Senior Projects (Public)

In this work, two sensing systems were researched in order to improve in situ environmental monitoring. The first is a pH and Total Alkalinity sensor used to determine these characteristics of sea water. I explored the facets of this sensor over a 7-week internship with Dr. Ellen Briggs in her lab in summer of 2023. The second is a more holistic sensing system that reads temperature, turbidity, and pressure used for studying environmental characteristics of Alaskan bever ponds. Both systems were developed in close collaboration with scientists who are collecting data to better understand the impacts of climate change. Better …


Game-Theoretic Approaches To Optimal Resource Allocation And Defense Strategies In Herbaceous Plants, Molly R. Creagar Dec 2023

Game-Theoretic Approaches To Optimal Resource Allocation And Defense Strategies In Herbaceous Plants, Molly R. Creagar

Department of Mathematics: Dissertations, Theses, and Student Research

Empirical evidence suggests that the attractiveness of a plant to herbivores can be affected by the investment in defense by neighboring plants, as well as investment in defense by the focal plant. Thus, allocation to defense may not only be influenced by the frequency and intensity of herbivory but also by defense strategies employed by other plants in the environment. We incorporate a neighborhood defense effect by applying spatial evolutionary game theory to optimal resource allocation in plants where cooperators are plants investing in defense and defectors are plants that do not. We use a stochastic dynamic programming model, along …


Surface Antibody Changes Protein Corona Both In Human And Mouse Serum But Not Final Opsonization And Elimination Of Targeted Polymeric Nanoparticles, Sara Capolla, Federico Colombo, Luca De Maso, Prisca Mauro, Paolo Bertoncin, Thilo Kähne, Alexander Engler, Luis Núñez, Gustavo Larsen, Et Al. Dec 2023

Surface Antibody Changes Protein Corona Both In Human And Mouse Serum But Not Final Opsonization And Elimination Of Targeted Polymeric Nanoparticles, Sara Capolla, Federico Colombo, Luca De Maso, Prisca Mauro, Paolo Bertoncin, Thilo Kähne, Alexander Engler, Luis Núñez, Gustavo Larsen, Et Al.

Department of Chemical and Biomolecular Engineering: Faculty Publications

Background: Nanoparticles represent one of the most important innovations in the medical field. Among nanocarriers, polymeric nanoparticles (PNPs) attracted much attention due to their biodegradability, biocompatibility, and capacity to increase efficacy and safety of encapsulated drugs. Another important improvement in the use of nanoparticles as delivery systems is the conjugation of a targeting agent that enables the nanoparticles to accumulate in a specific tissue. Despite these advantages, the clinical translation of therapeutic approaches based on nanoparticles is prevented by their interactions with blood proteins. In fact, the so-formed protein corona (PC) drastically alters the biological identity of the particles. Adsorbed …


2020-2021 Field Seasons Of Maize Gxe Project Within The Genomes To Fields Initiative, Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L. Schoemaker, Martin Costa, Kathryn J. Michel, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint-Garcia, Michael A. Gore, Candice N. Hirsch, Joseph E. Knoll, John Mckay, Richard Minyo, Seth C. Murray, James Schnable, Rajandeep S. Sekhon, Maninder P. Singh, Erin E. Sparks, Peter Thomison, Addie Thompson, Mitchell Tuinstra, Jason Wallace, Jacob D. Washburn, Teclemariam Weldekidan, Wenwei Xu, Natalia De Leon Dec 2023

2020-2021 Field Seasons Of Maize Gxe Project Within The Genomes To Fields Initiative, Dayane Cristina Lima, Alejandro Castro Aviles, Ryan Timothy Alpers, Alden Perkins, Dylan L. Schoemaker, Martin Costa, Kathryn J. Michel, Shawn Kaeppler, David Ertl, Maria Cinta Romay, Joseph L. Gage, James Holland, Timothy Beissinger, Martin Bohn, Edward Buckler, Jode Edwards, Sherry Flint-Garcia, Michael A. Gore, Candice N. Hirsch, Joseph E. Knoll, John Mckay, Richard Minyo, Seth C. Murray, James Schnable, Rajandeep S. Sekhon, Maninder P. Singh, Erin E. Sparks, Peter Thomison, Addie Thompson, Mitchell Tuinstra, Jason Wallace, Jacob D. Washburn, Teclemariam Weldekidan, Wenwei Xu, Natalia De Leon

Department of Agronomy and Horticulture: Faculty Publications

Objectives: This release note describes the Maize GxE project datasets within the Genomes to Fields (G2F) Initiative. The Maize GxE project aims to understand genotype by environment (GxE) interactions and use the information collected to improve resource allocation efficiency and increase genotype predictability and stability, particularly in scenarios of variable environmental patterns. Hybrids and inbreds are evaluated across multiple environments and phenotypic, genotypic, environmental, and metadata information are made publicly available. Data description: The datasets include phenotypic data of the hybrids and inbreds evaluated in 30 locations across the US and one location in Germany in 2020 and 2021, soil …


Aicropcam: Deploying Classification, Segmentation, Detection, And Counting Deep-Learning Models For Crop Monitoring On The Edge, Nipuna Chamara, Geng (Frank) Bai, Yufeng Ge Dec 2023

Aicropcam: Deploying Classification, Segmentation, Detection, And Counting Deep-Learning Models For Crop Monitoring On The Edge, Nipuna Chamara, Geng (Frank) Bai, Yufeng Ge

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Precision Agriculture (PA) promises to meet the future demands for food, feed, fiber, and fuel while keeping their production sustainable and environmentally friendly. PA relies heavily on sensing technologies to inform site-specific decision supports for planting, irrigation, fertilization, spraying, and harvesting. Traditional point-based sensors enjoy small data sizes but are limited in their capacity to measure plant and canopy parameters. On the other hand, imaging sensors can be powerful in measuring a wide range of these parameters, especially when coupled with Artificial Intelligence. The challenge, however, is the lack of computing, electric power, and connectivity infrastructure in agricultural fields, preventing …


Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Brandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma Dec 2023

Determining The Presence And Size Of Shoulder Lesions In Sows Using Computer Vision, Shubham Bery, Tami M. Brown-Brandl, Bradley T. Jones, Gary A. Rohrer, Sudhendu Raj Sharma

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Shoulder sores predominantly arise in breeding sows and often result in untimely culling. Reported prevalence rates vary significantly, spanning between 5% and 50% depending upon the type of crate flooring inside a farm, the animal’s body condition, or an existing injury that causes lameness. These lesions represent not only a welfare concern but also have an economic impact due to the labor needed for treatment and medication. The objective of this study was to evaluate the use of computer vision techniques in detecting and determining the size of shoulder lesions. A Microsoft Kinect V2 camera captured the top-down depth and …


Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman Dec 2023

Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman

United States Department of Agriculture Wildlife Services: Staff Publications

The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …


Analysis Of Mitochondrial Dna Sequence Data Demonstrates That Monophyly Of Myotis Occultus Is Complicated By Greater Sampling Of Myotis Lucifugus, Jeffrey M. Lorch, Daniel R. Taylor, Antoinette J. Piaggio Dec 2023

Analysis Of Mitochondrial Dna Sequence Data Demonstrates That Monophyly Of Myotis Occultus Is Complicated By Greater Sampling Of Myotis Lucifugus, Jeffrey M. Lorch, Daniel R. Taylor, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract

The validity of Myotis occultus as a species unique from Myotis lucifugus has been a source of debate. Most recently, many authorities treat M. occultus as a distinct species, at least in part because a previous study showed that M. occultus and M. l. carissima (the subspecies that occurs in closest geographic proximity to M. occultus) form separate monophyletic clades based on sequences of two mitochondrial genes (cytochrome-b [cytb] and cytochrome oxidase subunit II [COII]). We re-evaluated the phylogenetic relationship between M. occultus and M. lucifugus based on mitochondrial sequences …


The Developmental Process For Adenoviral Vectored Canine Influenza Vaccines, Nicholas Jeanjaquet Dec 2023

The Developmental Process For Adenoviral Vectored Canine Influenza Vaccines, Nicholas Jeanjaquet

School of Biological Sciences: Dissertations, Theses, and Student Research

Canine Influenza Virus (CIV) is a recently emerged branch of Influenza A virus that is highly infectious in dogs. The first strain was isolated in 2003, and it has quickly become endemic in areas with dense dog populations, most notably in Asia. The proximity of dogs to humans, along with their potential to serve as mixing vessels for reassortment, raises concern for possible zoonotic transmission and a potential human pandemic. Available vaccines are not frequently updated and struggle to prevent the spread of currently circulating strains. This highlights the need for a new and more effective vaccine. We outline the …


Investigation Of Breeding Objectives And Indexes-In-Retrospect, Hunter F. Valasek Dec 2023

Investigation Of Breeding Objectives And Indexes-In-Retrospect, Hunter F. Valasek

Department of Animal Science: Dissertations, Theses, and Student Research

This thesis presents two projects that investigate the impacts of breeding objectives and indexes-in-retrospect within the beef cattle industry. The first project synthesized how changes due to planning horizon, breeding system, and sale endpoint in the economic breeding goal of cattle influence the relative emphasis of traits as well as the re-ranking of selection candidates. A total of three breeding systems that represent straightbred and crossbred cattle were used along with six planning horizons (2, 5, 10, 20, 30, and 50 yrs.) for both a weaning and slaughter point of sale. The combination of these different breeding objective attributes resulted …


Factors Affecting Forage Quality And The Subsequent Response In Production And Energy Metabolism In Lactating Jersey Cows, Kassidy Kate Buse Dec 2023

Factors Affecting Forage Quality And The Subsequent Response In Production And Energy Metabolism In Lactating Jersey Cows, Kassidy Kate Buse

Department of Animal Science: Dissertations, Theses, and Student Research

Forage quality is the potential of a forage to produce a production response in animals. Because of how essential they are in dairy cattle rations, forages can have major influence on the behavior and production of dairy cattle. In experiment 1, the effect of forage fragility on the rumen environment and digestibility was evaluated. Increasing the inclusion of a less fragile forage led to greater rumen retention time, which resulted in lower rumen pH and greater NDF digestibility. Experiment 2 evaluated the effects of diets high in either corn silage or alfalfa haylage supplemented with either corn- or soybased protein …


Embracing Uncertainty: A Narrative Case Study On Teacher-Learner Relationships Through Restorative Justice Practices In Education, Zachary Schafer, Guy Trainin Nov 2023

Embracing Uncertainty: A Narrative Case Study On Teacher-Learner Relationships Through Restorative Justice Practices In Education, Zachary Schafer, Guy Trainin

Department of Teaching, Learning, and Teacher Education: Theses and Other Student Research

Restorative justice practices in educational settings recognising trauma and extreme life circumstances have become increasingly relevant since the COVID-19 pandemic and the growing impacts of climate change. This narrative inquiry uses Clandinin and Connelly’s suggestions for data collection and narrative structure to describe the interactions between one teacher and one learner over the course of two years in a programme created as an alternative to school suspension. Using a dual framework combining a variety of perspectives from restorative justice practices and Chen’s model of uncertainty management in science education, the researchers iteratively and thematically analysed the teacher-learner interactions. The storied …


Potential Hybridization Among Two Species Of California Salvia, Ellie Morrison, Bryan Drew Nov 2023

Potential Hybridization Among Two Species Of California Salvia, Ellie Morrison, Bryan Drew

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Hybridization among plants is fairly common, particularly in instances where closely related species are sympatric. One example of a group in which hybridization has been detected is the genus Salvia (Lamiaceae; mint family). Salvia is a diverse genus consisting of about 1,000 species and is defined primarily by having only two stamens, each with their anther sacs separated by elongated connective tissue. The genus has diversity centers around the world, including Southwest Asia and the Mediterranean region, Mexico/Central America, northern and central South America, and temperate East Asia. The genus also has a smaller species radiation of 19 species in …


A Global Faostat Reference Database Of Cropland Nutrient Budgets And Nutrient Use Efficiency (1961–2020): Nitrogen, Phosphorus And Potassium, Cameron I. Ludemann, Nathan Wanner, Pauline Chivenge, Achim Dobermann, Rasmus Einarsson, Patricio Grassini, Armelle Gruere, Kevin Jackson, Luis Lassaletta, Federico Maggi, Griffiths Obli-Laryea, Martin K. Van Ittersum, Srishti Vishwakarma, Xin Zhang, Francesco N. Tubiello Nov 2023

A Global Faostat Reference Database Of Cropland Nutrient Budgets And Nutrient Use Efficiency (1961–2020): Nitrogen, Phosphorus And Potassium, Cameron I. Ludemann, Nathan Wanner, Pauline Chivenge, Achim Dobermann, Rasmus Einarsson, Patricio Grassini, Armelle Gruere, Kevin Jackson, Luis Lassaletta, Federico Maggi, Griffiths Obli-Laryea, Martin K. Van Ittersum, Srishti Vishwakarma, Xin Zhang, Francesco N. Tubiello

Department of Agronomy and Horticulture: Faculty Publications

Nutrient budgets help to identify the excess or insufficient use of fertilizers and other nutrient sources in agriculture. They allow for the calculation of indicators, such as the nutrient balance (surplus if positive or deficit if negative) and nutrient use efficiency, that help to monitor agricultural productivity and sustainability across the world. We present a global database of country-level budget estimates for nitrogen (N), phosphorus (P) and potassium (K) on cropland. The database, disseminated in FAOSTAT, is meant to provide a global reference, synthesizing and continuously updating the state of the art on this topic. The database covers 205 countries …


Using Genetic Comparisons Of Populations From Arizona, Mexico, And Texas To Investigate Fall Armyworm Migration In The American Southwest, Rodney N. Nagoshi, Ashley E. Tessnow, Yves Carrière, Jeff Bradshaw Dr., Kyle Harrington, Gregory A. Sword, Robert L. Meagher Nov 2023

Using Genetic Comparisons Of Populations From Arizona, Mexico, And Texas To Investigate Fall Armyworm Migration In The American Southwest, Rodney N. Nagoshi, Ashley E. Tessnow, Yves Carrière, Jeff Bradshaw Dr., Kyle Harrington, Gregory A. Sword, Robert L. Meagher

Department of Entomology: Faculty Publications

Fall armyworm (FAW) is a global agricultural pest, causing substantial economic losses in corn and many other crops. Complicating efforts to control this pest is its capacity for long distance flights, which has been described in greatest detail for the central and eastern sections of the United States. FAW infestations are also routinely found in agricultural areas in southern Arizona, which lie beyond the western limits of the mapped migratory pathways. Climate suitability analysis found that the affected Arizona locations cannot support permanent FAW populations, indicating that these FAW most likely arise from annual migrations. A better understanding of this …


Molecular Species Delimitation Of Marine Trematodes Over Wide Geographical Ranges: Schikhobalotrema Spp. (Digenea: Haplosplanchnidae) In Needlefishes (Belonidae) From The Pacific Ocean And Gulf Of Mexico, Gerardo Pérez-Ponce De León, Brenda Solórzano-García, Daniel C. Huston, Berenit Mendoza-Garfias, Jhonatan Cabañas-Granillo, Scott C. Cutmore, Thomas H. Cribb Nov 2023

Molecular Species Delimitation Of Marine Trematodes Over Wide Geographical Ranges: Schikhobalotrema Spp. (Digenea: Haplosplanchnidae) In Needlefishes (Belonidae) From The Pacific Ocean And Gulf Of Mexico, Gerardo Pérez-Ponce De León, Brenda Solórzano-García, Daniel C. Huston, Berenit Mendoza-Garfias, Jhonatan Cabañas-Granillo, Scott C. Cutmore, Thomas H. Cribb

Harold W. Manter Laboratory of Parasitology: Library Materials

Geographical distribution plays a major role in our understanding of marine biodiversity. Some marine fish trematodes have been shown to have highly restricted geographical distributions, while some are known to occur over very wide ranges; however, very few of these wide distributions have been demonstrated genetically. Here, we analyse species of the genus Schikhobalotrema (Haplosplanchnidae) parasitizing beloniforms from the tropical west Pacific, the eastern Pacific and the Gulf of Mexico (GoM). We test the boundaries of these trematodes by integrating molecular and morphological data, host association, habitat of the hosts and geographical distribution, following a recently proposed and standardized delineation …


Do Organic Farming Practices Improve Soil Physical Properties?, Humberto Blanco-Canqui, Sabrina J. Ruis, Charles A. Francis Nov 2023

Do Organic Farming Practices Improve Soil Physical Properties?, Humberto Blanco-Canqui, Sabrina J. Ruis, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Organic farming (OF) is a reemerging system that could address food security and adverse environmental footprints of conventional farming (CF). However, how OF affects the soil physical environment, an essential pillar for soil ecosystem service delivery, is not well understood. This paper (1) reviews published global literature up to 13 July 2023 regarding the impacts of OF on soil physical properties compared with CF and (2) underlines research needs. Literature indicates OF improves some soil physical properties relative to CF although studies on some properties were few. Specifically, OF increased wet aggregate stability, saturated hydraulic conductivity, and plant available water …


Lactic Acid Bacterial Surface Display Of Scytovirin Inhibitors For Anti-Ebolavirus Infection, Joshua Wiggins, Ngan Nguyen, Wenzhong Wei, Leah Liu Wang, Haley Hollingsead Olson, Shi-Hua Xiang Nov 2023

Lactic Acid Bacterial Surface Display Of Scytovirin Inhibitors For Anti-Ebolavirus Infection, Joshua Wiggins, Ngan Nguyen, Wenzhong Wei, Leah Liu Wang, Haley Hollingsead Olson, Shi-Hua Xiang

Nebraska Center for Virology: Faculty Publications

Scytovirin (SVN) is a lectin from cyanobacteria which has a strong inhibitory activity against Ebola virus infection. We engineered scytovirin as the inhibitor for surface display of lactic acid bacteria to block Ebola virus infection. Two different bacterial strains (Lactobacillus casei and Lactococcus lactis) were successfully engineered for scytovirin expression on the bacterial surface. These bacteria were found to be effective at neutralizing pseudotyped Ebolavirus in a cell-based assay. This approach can be utilized for prophylactic prevention, as well as for treatment. Since lactic acid bacteria can colonize the human body, a long-term efficacy could be achieved. Furthermore, …


The Pseudomonas Syringae Pv. Tomato Dc3000 Effector Hopd1 Interferes With Cellular Dynamics Associated With The Function Of The Plant Immune Protein Atnhr2b, Luis Francisco Marín-Ponce, Catalina Rodríguez-Puerto, Perla Rocha-Loyola, Clemencia M. Rojas Nov 2023

The Pseudomonas Syringae Pv. Tomato Dc3000 Effector Hopd1 Interferes With Cellular Dynamics Associated With The Function Of The Plant Immune Protein Atnhr2b, Luis Francisco Marín-Ponce, Catalina Rodríguez-Puerto, Perla Rocha-Loyola, Clemencia M. Rojas

Department of Plant Pathology: Faculty Publications

The plant pathogenic bacterium Pseudomonas syringae pv. tomato DC3000 (Pst DC3000) causes disease in tomato, in the model plant Arabidopsis thaliana, and conditionally in Nicotiana benthamiana. The pathogenicity of Pst DC3000 is mostly due to bacterial virulence proteins, known as effectors, that are translocated into the plant cytoplasm through the type III secretion system (T3SS). Bacterial type III secreted effectors (T3SEs) target plants physiological processes and suppress defense responses to enable and support bacterial proliferation. The Pst DC3000 T3SE HopD1 interferes with plant defense responses by targeting the transcription factor NTL9. This work shows that HopD1 also targets …


3dgaunet: 3d Generative Adversarial Networks With A 3d U-Net Based Generator To Achieve The Accurate And Effective Synthesis Of Clinical Tumor Image Data For Pancreatic Cancer, Yu Shi, Hannah Tang, Michael J. Baine, Michael A. Hollingsworth, Huijing Du, Dandan Zheng, Chi Zhang, Hongfeng Yu Nov 2023

3dgaunet: 3d Generative Adversarial Networks With A 3d U-Net Based Generator To Achieve The Accurate And Effective Synthesis Of Clinical Tumor Image Data For Pancreatic Cancer, Yu Shi, Hannah Tang, Michael J. Baine, Michael A. Hollingsworth, Huijing Du, Dandan Zheng, Chi Zhang, Hongfeng Yu

School of Computing: Faculty Publications

Pancreatic ductal adenocarcinoma (PDAC) presents a critical global health challenge, and early detection is crucial for improving the 5-year survival rate. Recent medical imaging and computational algorithm advances offer potential solutions for early diagnosis. Deep learning, particularly in the form of convolutional neural networks (CNNs), has demonstrated success in medical image analysis tasks, including classification and segmentation. However, the limited availability of clinical data for training purposes continues to represent a significant obstacle. Data augmentation, generative adversarial networks (GANs), and cross-validation are potential techniques to address this limitation and improve model performance, but effective solutions are still rare for 3D …


Current Use Of Cigarettes In The United States: The Joint Role Of Race/Ethnicity And Health Insurance Coverage, Julia N. Soulakova, Lisa J. Crockett Nov 2023

Current Use Of Cigarettes In The United States: The Joint Role Of Race/Ethnicity And Health Insurance Coverage, Julia N. Soulakova, Lisa J. Crockett

Department of Psychology: Faculty Publications

The goal of this study was to assess the joint role of race/ethnicity and a health insurance coverage type (private, Medicare, Medicaid) in current cigarette use among adults in the U.S. Data from the 2019 Tobacco Use Supplement and the 2019 Annual Social and Economic Supplement of the Current Population Survey were merged (n = 39,882). Bivariate associations between each coverage type and smoking prevalence were examined within each of six racial/ethnic groups. A multiple logistic regression model (for the odds of current cigarette use) was estimated to explore the interactions between race/ethnicity and an indicator of each type of …


The Influence Of Grazing Systems On Bird Species Richness And Density In The Nebraska Sandhills, Silka L.F. Kempema, Walter H. Schacht, Larkin A. Powell Nov 2023

The Influence Of Grazing Systems On Bird Species Richness And Density In The Nebraska Sandhills, Silka L.F. Kempema, Walter H. Schacht, Larkin A. Powell

School of Natural Resources: Faculty Publications

Grazing is the de facto method of habitat management used in much of the Nebraska Sandhills. Ranchers use a variety of grazing systems, and our goal was to evaluate the effects of systems on grassland birds. We estimated the species richness and density of grassland birds for three grazing systems used on private ranches: long, medium, and short duration grazing systems. We observed sixty species, and the grazing system with pastures utilizing long duration grazing periods had the highest estimates of species richness as well as the most heterogeneous habitat structure. Differences in species richness among systems were most pronounced …


Mechanisms And Opportunities For Rational In Silico Design Of Enzymes To Degrade Per- And Polyfluoroalkyl Substances (Pfas), Melissa Marciesky, Diana S. Aga, Ian M. Bradley, Nirupam Aich, Carla Ng Nov 2023

Mechanisms And Opportunities For Rational In Silico Design Of Enzymes To Degrade Per- And Polyfluoroalkyl Substances (Pfas), Melissa Marciesky, Diana S. Aga, Ian M. Bradley, Nirupam Aich, Carla Ng

Department of Civil and Environmental Engineering: Faculty Publications

Per and polyfluoroalkyl substances (PFAS) present a unique challenge to remediation techniques because their strong carbon−fluorine bonds make them difficult to degrade. This review explores the use of in silico enzymatic design as a potential PFAS degradation technique. The scope of the enzymes included is based on currently known PFAS degradation techniques, including chemical redox systems that have been studied for perfluorooctanesulfonic acid (PFOS) and perfluorooctanoic acid (PFOA) defluorination, such as those that incorporate hydrated electrons, sulfate, peroxide, and metal catalysts. Bioremediation techniques are also discussed, namely the laccase and horseradish peroxidase systems. The redox potential of known reactants and …


Tulathromycin Metaphylaxis Increases Nasopharyngeal Isolation Of Multidrug Resistant Mannheimia Haemolytica In Stocker Heifers, William B. Crosby, Brandi B. Karisch, Lari M. Hiott, Lee J. Pinnell, Alexandra Pittman, Jonathan G. Frye, Charlene R. Jackson, John Dustin Loy, William B. Epperson, John Blanton Jr., Sarah F. Capik, Paul S. Morley, Amelia R. Woolums Nov 2023

Tulathromycin Metaphylaxis Increases Nasopharyngeal Isolation Of Multidrug Resistant Mannheimia Haemolytica In Stocker Heifers, William B. Crosby, Brandi B. Karisch, Lari M. Hiott, Lee J. Pinnell, Alexandra Pittman, Jonathan G. Frye, Charlene R. Jackson, John Dustin Loy, William B. Epperson, John Blanton Jr., Sarah F. Capik, Paul S. Morley, Amelia R. Woolums

School of Veterinary and Biomedical Sciences: Faculty Publications

Bovine respiratory disease (BRD) is a leading cause of disease in feedlot and stocker calves with Mannheimia haemolytica (MH) as one of the most common etiologies. One of the most effective means of controlling BRD is through metaphylaxis, which involves administering antimicrobials to all animals at high risk of developing BRD. However, increasing prevalence of multidrug resistant (MDR) MH may reduce efficacy of metaphylaxis due to decreased susceptibility to drugs used for metaphylaxis. Primarily, this study aimed to determine the effect of tulathromycin metaphylaxis and subsequent BRD treatment on antimicrobial resistance (AMR) in MH isolated from stocker calves. Secondary objectives …