Digital Commons Network^™

Autonomous, Long-Range, Sensor Emplacement Using Unmanned Aircraft Systems, Adam Plowcha, Justin Bradley, Jacob Hoberg, Thomas Ammon, Mark Nail, Brittany Duncan, Carrick Detweiler

School of Computing: Faculty Publications

Automated, in-ground sensor emplacement can significantly improve remote, terrestrial, data collection capabilities. Utilizing a multicopter, unmanned aircraft system (UAS) for this purpose allows sensor insertion with minimal disturbance to the target site or surrounding area. However, developing an emplacement mechanism for a small multicopter, autonomy to manage the target selection and implantation process, as well as long-range deployment are challenging to address. We have developed an autonomous, multicopter UAS that can implant subsurface sensor devices. We enhanced the UAS autopilot with autonomy for target and landing zone selection, as well as ensuring the sensor is implanted properly in the ground. …

Instructional Models For Course-Based Research Experience (Cre) Teaching, David I. Hanauer, Mark J. Graham, Rachel J. Arnold, Mary A. Ayuk, Mitchell F. Balish, Andrea R. Beyer, Kristen A. Butela, Christine A. Byrum, Catherine P. Chia, Hui Min Chung, Kari L. Clase, Stephanie Conant, Roy J. Coomans, Tom D'Elia, Jason Diaz, Arturo Diaz, Jean A. Doty, Nicholas P. Edgington, Dustin C. Edwards, Elvira Eivazova, Christine B. Emmons, Kayla M. Fast, Viknesh Sivanathan, And About 50 Others

School of Biological Sciences: Faculty Publications

The course-based research experience (CRE) with its documented educational benefits is increasingly being implemented in science, technology, engineering, and mathematics education. This article reports on a study that was done over a period of 3 years to explicate the instructional processes involved in teaching an undergraduate CRE. One hundred and two instructors from the established and large multi-institutional SEA-PHAGES program were surveyed for their understanding of the aims and practices of CRE teaching. This was followed by large-scale feedback sessions with the cohort of instructors at the annual SEA Faculty Meeting and subsequently with a small focus group of expert …

Irrigation’S Impact On A Precipitation Event During Grainex In Nebraska, Usa, Daniel Whitesel

School of Natural Resources: Dissertations, Theses, and Student Research

Numerous precipitation events were observed during the Great Plains Irrigation Experiment (GRAINEX). However, the precipitation event that was observed the morning of 23 July 2018 is the focus of this thesis. Six experiments were conducted which involved increasing or decreasing soil moisture by 5% increments over the irrigated cropland. An additional experiment, which changed the irrigated land use to grassland, showed precipitation increases. It was found that regardless of strength of irrigation, average precipitation decreased. Average precipitation decreased by up to 72% when irrigation increased compared to the control simulation and decreased by up to 85% when irrigation decreased compared …

Toward The Understanding Of The 2018 Arnold, Ne Earthquake Cluster: Relocation Of Hypocenters And Establishment Of New Gravity Base Stations, Kris Guthrie

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

In 2018, 27 unexpected earthquakes occurred in central Nebraska near Arnold. These earthquakes have no readily apparent cause and no evidence of the responsible fault system is seen at the surface. A joint analysis of vintage, regional gravity and magnetic datasets before the first earthquake revealed a lineament that could represent a pre-existing fault system. New high resolution potential fields data are needed to confidently map the subsurface features around the cluster. To design a survey and collect the data, the following tasks need to be addressed: [1] The earthquakes’ hypocenters need to be improved (relocated) to increase the efficiency …

The Research And Design Of Sustainlnk: An Online Hub Of Sustainability Resources In Lincoln, Nebraska, Kayla Kremke

Honors Program: Senior Projects (Public)

SustainLNK (www.sustainlnk.org) is a website serving as a hub of sustainability resources in Lincoln, Nebraska. The site began as a personal project before becoming my UNL Honors Program Senior Project in Spring 2021, and consists of a website of resources along with two social media accounts providing more timely updates on sustainability-related events. This document outlines the thought and planning that was behind the development of the resource, along with relevant links to grow a deeper understanding of this new community resource.

Impacts Of Temperature And Carbon Dioxide On Boro Rice Production, Sabiha Ferdous

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

There are different anticipated impacts of climate change (CC) on agriculture all over the world. Bangladesh as a developing country has potential vulnerability and negative impacts on CC. This change in meteorological parameters creates negative impacts on agricultural production which is a threat to food security and economic development. The country has recently achieved food security in rice which is mainly due to increased yields and area coverage of irrigated dry season (Boro) rice over the last decades. It is necessary to predict the future Boro rice production in accordance with CC as well as take supplementary actions to ensure …

Existence And Uniqueness Of Minimizers For A Nonlocal Variational Problem, Michael Pieper

Honors Program: Senior Projects (Public)

Nonlocal modeling is a rapidly growing field, with a vast array of applications and connections to questions in pure math. One goal of this work is to present an approachable introduction to the field and an invitation to the reader to explore it more deeply. In particular, we explore connections between nonlocal operators and classical problems in the calculus of variations. Using a well-known approach, known simply as The Direct Method, we establish well-posedness for a class of variational problems involving a nonlocal first-order differential operator. Some simple numerical experiments demonstrate the behavior of these problems for specific choices of …

Nebraska Statewide Groundwater-Level Monitoring Report 2021, Aaron R. Young, Mark E. Burbach, Leslie M. Howard, Sue Olafsen Lackey, Robert Matthew Joeckel

Conservation and Survey Division: Faculty and Staff Publications

This report is a synthesis of groundwater-level monitoring programs in Nebraska. It is a continuation of the series of annual reports and maps produced by the Conservation and Survey Division (CSD) of the University of Nebraska in cooperation with the U.S. Geological Survey (USGS) since the 1950s. Groundwater-level monitoring began in Nebraska in 1930 in an effort to survey the state’s groundwater resources and to observe changes in its availability on a continuing basis. The CSD and USGS cooperatively developed, maintained, and operated an observation-well network throughout the state. These two agencies were responsible for collecting and archiving this information, …

Adaptation, Transformation And Resilience In Healthcare Comment On “Government Actions And Their Relation To Resilience In Healthcare During The Covid-19 Pandemic In New South Wales, Australia And Ontario, Canada”, David G. Angeler, Harris A. Eyre, Michael Berk, Craig R. Allen, William Hynes, Igor Linkov

School of Natural Resources: Faculty Publications

Adaptive capacity is a critical component of building resilience in healthcare (RiH). Adaptive capacity comprises the ability of a system to cope with and adapt to disturbances. However, “shocks,” such as the current coronavirus disease 2019 (COVID-19) pandemic, can potentially exceed critical adaptation thresholds and lead to systemic collapse. To effectively manage healthcare systems during periods of crises, both adaptive and transformative changes are necessary. This commentary discusses adaptation and transformation as two complementary, integral components of resilience and applies them to healthcare. We treat resilience as an emergent property of complex systems that accounts for multiple, often disparately distinct …

Uncovering The Potential Learning In Short-Term Study Abroad, Elizabeth Niehaus, Gudrun Nyunt

Department of Educational Administration: Faculty Publications

The purpose of this quantitative study was to identify the facets of intercultural learning that might be achievable through faculty-led, short-term study abroad. Exploring changes in various facets of students’ intercultural competence pre- to post-study abroad, we found that the largest gains were in the cultural knowledge domain. Findings also point to vast differences in how individual students do, and do not, show gains across multiple measures of intercultural competence after studying abroad.

Synthesis And Evaluation Of 11c-Labeled Triazolones As Probes For Imaging Fatty Acid Synthase Expression By Positron Emission Tomography, James M. Kelly, Thomas M. Jeitner, Nicole N. Waterhouse, Wenchao Qu, Ethan J. Linstad, Banafshe Samani, Clarence Williams Jr., Anastasia Nikolopoulou, Alejandro Amor-Coarasa, Stephen G. Dimagno, John W. Babich

Department of Chemistry: Faculty Publications

Cancer cells require lipids to fulfill energetic, proliferative, and signaling requirements. Even though these cells can take up exogenous fatty acids, the majority exhibit a dependency on de novo fatty acid synthesis. Fatty acid synthase (FASN) is the rate-limiting enzyme in this process. Expression and activity of FASN is elevated in multiple cancers, where it correlates with disease progression and poor prognosis. These observations have sparked interest in developing methods of detecting FASN expression in vivo. One promising approach is the imaging of radiolabeled molecular probes targeting FASN by positron emission tomography (PET). However, although [¹¹C]acetate uptake by …

Paradigm Versus Paradox On The Prairie: Testing Competing Stream Fish Movement Frameworks Using An Imperiled Great Plains Minnow, Zachary D. Steffensmeier, Maeghen Wedgeworth, Lauren Yancy, Noah Santee, Shannon K. Brewer, Joshuah S. Perkin

United States Geological Survey: Staff Publications

Background: Movement information can improve conservation of imperiled species, yet movement is not quantified for many organisms in need of conservation. Prairie chub (Macrhybopsis australis) is a regionally endemic freshwater fish with unquantified movement ecology and currently considered for listing under the Endangered Species Act. The purpose of this study was to test competing ecological theories for prairie chub movement, including the colonization cycle hypothesis (CCH) that posits adults must make upstream movements to compensate for downstream drift at early life stages, and the restricted movement paradigm (RMP) that describes populations as heterogeneous mixes of mostly stationary …

On The Asymptotic Behavior Of Solutions To A Structure Acoustics Model, Baowei Feng, Yanqiu Guo, Mohammad A. Rammaha

Department of Mathematics: Faculty Publications

This article concerns the long term behavior of solutions to a structural acoustic model consisting of a semilinear wave equation defined on a smooth bounded domain Ω ⊂ R³ which is coupled with a Berger plate equation acting on a flat portion of the boundary of . The system is influenced by several competing forces, in particular a source term acting on the wave equation which is allowed to have a supercritical exponent.

Our results build upon those obtained by Becklin and Rammaha [8]. With some re- strictions on the parameters in the system and with careful analysis involving …

A Review Of The Impacts Of Invasive Wild Pigs On Native Vertebrates, Matthew T. Mcdonough, Stephen S. Ditchkoff, Mark D. Smith, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

The wild pig (Sus scrofa) is a successful invasive species that has become well established outside of its native range in Eurasia. The invasive wild pig is the result of released or escaped domesticated livestock becoming feral, or Eurasian boar introduced for hunting purposes. The global spread of wild pigs has recently been exacerbated in some areas, such as the USA, by anthropogenically assisted dispersal. Once established in novel ecosystems, wild pigs have the potential to have significant negative impacts on the ecosystem, and the scientific literature is replete with examples. It is generally accepted that wild pigs …

Improving Taxonomic Delimitation Of Fungal Species In The Age Of Genomics And Phenomics, Asjley Stengel, Kimberly M. Stanke, Amanda C. Quattrone, Joshua Herr

Department of Plant Pathology: Faculty Publications

Species concepts have long provided a source of debate among biologists. These lively debates have been important for reaching consensus on how to communicate across scientific disciplines and for advancing innovative strategies to study evolution, population biology, ecology, natural history, and disease epidemiology. Species concepts are also important for evaluating variability and diversity among communities, understanding biogeographical distributions, and identifying causal agents of disease across animal and plant hosts. While there have been many attempts to address the concept of species in the fungi, there are several concepts that have made taxonomic delimitation especially challenging. In this review we discuss …

Chemical Reversible Crosslinking Enables Measurement Of Rna 3d Distances And Alternative Conformations In Cells, Ryan Van Damme, Kongpan Li, Minjie Zhang, Jianhui Bai, Wilson H. Lee, Joseph D. Yesselman, Zhipeng Lu, Willem A. Velema

Department of Chemistry: Faculty Publications

Three-dimensional (3D) structures dictate the functions of RNA molecules in a wide variety of biological processes. However, direct determination of RNA 3D structures in vivo is difficult due to their large sizes, conformational heterogeneity, and dynamics. Here we present a method, Spatial 2′-Hydroxyl Acylation Reversible Crosslinking (SHARC), which uses chemical crosslinkers of defined lengths to measure distances between nucleotides in cellular RNA. Integrating crosslinking, exonuclease (exo) trimming, proximity ligation, and high throughput sequencing, SHARC enables transcriptome-wide tertiary structure contact maps at high accuracy and precision, revealing heterogeneous RNA structures and interactions. SHARC data provide constraints that improves Rosetta-based RNA 3D …

Use Of A Direct, Rapid Immunohistochemical Test For Diagnosis Of Rabies Virus In Bats, Charles E. Rupprecht, Lolita Van Pelt, April D. Davis, Richard B. Chipman, David L. Bergman

United States Department of Agriculture Wildlife Services: Staff Publications

Rabies, a zoonotic encephalitis due to transmission of a lyssavirus, such as rabies virus (RABV), has the highest case fatality of any infectious disease. A global program for the elimination of human rabies caused by dogs is proposed for realization by 2030. Sensitive, specific, and inexpensive diagnostic tests are necessary for enhanced surveillance to detect infection, inform public health and veterinary professionals during risk assessments of exposure, and support overall programmatic goals. Multiple laboratory techniques are used to confirm a suspect case of rabies. One method for the detection of lyssavirus antigens within the brain is the direct rapid immunohistochemical …

Rethinking Sampled-Data Control For Unmanned Aircraft Systems, Xinkai Zhang, Justin M. Bradley

School of Computing: Faculty Publications

Unmanned aircraft systems are expected to provide both increasingly varied functionalities and outstanding application performances, utilizing the available resources. In this paper, we explore the recent advances and challenges at the intersection of real-time computing and control and show how rethinking sampling strategies can improve performance and resource utilization. We showcase a novel design framework, cyber-physical co-regulation, which can efficiently link together computational and physical characteristics of the system, increasing robust performance and avoiding pitfalls of event-triggered sampling strategies. A comparison experiment of different sampling and control strategies was conducted and analyzed. We demonstrate that co-regulation has resource savings similar …

Ahp Based Multi Criteria Decision Analysis Of Success Factors To Enhance Decision Making In Infrastructure Construction Projects, Solomon Belay, James D. Goedert, Asregedew Woldesenbet, Saeed Rokooei

Durham School of Architectural Engineering and Construction: Faculty Publications

The study presents analytical data-based multi-criteria approach of critical success factors of infrastructure construction projects analyzed in the Ethiopian construction industry. This multi-criteria technique helps to improve the decision capabilities and ultimate performance of construction processes in various low-income countries of the East African region. The aim of this paper is to establish a logical relationship and interdependencies of success-related factors for enhancing decision making for various project teams and identify priorities while taking into account all known construction organizational constraints. A structured hierarchical matrix was developed based on a pre-identified success-related factors, and initially evaluated by experienced professionals as …

Fluids And Melts At The Magmatic-Hydrothermal Transition, Recorded By Unidirectional Solidification Textures At Saginaw Hill, Arizona, Usa, Wyatt M. Bain, Pilar Lecumberri-Sanchez, Erin E. Marsh, Matthew Steele-Macinnis

United States Geological Survey: Staff Publications

Fluid exsolution and melt evolution at the magmatic-hydrothermal transition are critical processes driving the metal enrichment of porphyry systems. Coeval fluid and melt inclusion assemblages in unidirectional solidification textures (USTs) at Saginaw Hill—a small, porphyry Cu system in southwestern Arizona—record a dynamic and repetitious process of fluid accumulation and release. The cores of quartz crystals throughout the UST bands host coeval silicate melt and brine inclusions but lack vapor-rich inclusions. This could indicate preferential expulsion of vapor and trapping of high-density brine during episodes of fracturing or the direct exsolution of single-phase high-salinity brine from the silicate melt. In contrast, …

Decomposition Of Organic Peroxides And Hydrogen Peroxide By The Iron Thiolates And Related Complexes, Patrick H. Dussault, Andrew Olson

Department of Chemistry: Faculty Publications

Disclosed herein is a method of reducing or disproportionating peroxide, comprising combining an organic chalcogenide, an iron salt, and the peroxide in the presence of an additional reductant, which can be the organic chalcogenide. The method can be used to, e.g., prepare alcohols from peroxides and to disproportionate hydrogen peroxide into water and oxygen.

Optimizing Management Of Invasions In An Uncertain World Using Dynamic Spatial Models, Kim M. Pepin, Amy J. Davis, Rebecca S. Epanchin-Niell, Andrew M. Gormley, Joslin L. Moore, Timothy J. Smyser, H. Bradley Shaffer, William L. Kendall, Katriona Shea, Michael C. Runge, Sophie Mckee

United States Department of Agriculture Wildlife Services: Staff Publications

Dispersal drives invasion dynamics of nonnative species and pathogens. Applying knowledge of dispersal to optimize the management of invasions can mean the difference between a failed and a successful control program and dramatically improve the return on investment of control efforts. A common approach to identifying optimal management solutions for invasions is to optimize dynamic spatial models that incorporate dispersal. Optimizing these spatial models can be very challenging because the interaction of time, space, and uncertainty rapidly amplifies the number of dimensions being considered. Addressing such problems requires advances in and the integration of techniques from multiple fields, including ecology, …

Practice Cost And Size Differences In Invasive Plant Management Strategies: An Empirical Analysis Of Us Great Plains States, Mazbahul G. Ahamad

Department of Agronomy and Horticulture: Faculty Publications

Grassland conservation of the Conservation Stewardship Program in the United States (US) is one of the largest cost-sharing initiatives for protecting grazing land from invasive and woody plants. The practice cost and unit size of various invasive and woody plant management strategies, such as mulching, brush management, and pre- scribed burning, are different from state to state. We aimed to compare and examine the association between practice cost ($/acre[ac]) and standard unit size of practice (acre) of mulching, brush management, and pre- scribed burning strategies in nine US Great Plains states, including Kansas, Montana, Nebraska, New Mexico, North Dakota, Oklahoma, …

An Efficient Method Of Evaluating Multiple Concurrent Management Actions On Invasive Populations, Amy J. Davis, Randy Farrar, Brad Jump, Parker Hall, Travis Guerrant, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Evaluating the efficacy of management actions to control invasive species is crucial for maintaining funding and to provide feedback for the continual improvement of management efforts. However, it is often difficult to assess the efficacy of control methods due to limited resources for monitoring. Managers may view effort on monitoring as effort taken away from performing management actions. We developed a method to estimate invasive species abundance, evaluate management effectiveness, and evaluate population growth over time from a combination of removal activities (e.g., trapping, ground shooting) using only data collected during removal efforts (method of removal, date, location, number of …

Allodb: An R Package For Biomass Estimation At Globally Distributed Extratropical Forest Plots, Erika Gonzalez-Akre, Camille Piponiot, Mauro Lepore, Valentine Herrmann, James A. Lutz, Jennifer L. Baltzer, Christopher W. Dick, Gregory S. Gilbert, Fangliang He, Michael Heym, Alejandra I. Huerta, Patrick A. Jansen, Daniel J. Johnson, Nikolai Knapp, Kamil Král, Dunmei Lin, Yadvinder Malhi, Sean M. Mcmahon, Jonathan A. Myers, David Orwig, Diego I. Rodríguez-Hernández, Sabrina E. Russo, Jessica Shue, Xugao Wang, Amy Wolf, Tonghui Yang, Stuart J. Davies, Kristina J. Anderson-Teixeira

School of Natural Resources: Faculty Publications

Allometric equations for calculation of tree above-ground biomass (AGB) form the basis for estimates of forest carbon storage and exchange with the atmosphere. While standard models exist to calculate forest biomass across the tropics, we lack a standardized tool for computing AGB across boreal and temperate regions that comprise the global extratropics. Here we present an integrated R package, allodb, containing systematically selected published allometric equations and proposed functions to compute AGB. The data component of the package is based on 701 woody species identified at 24 large Forest Global Earth Observatory (ForestGEO) forest dynamics plots representing a wide diversity …

2022 Gray Wolf Questions And Answers, United States Fish And Wildlife Service

United States Fish and Wildlife Service: Publications

2022 Gray Wolf Questions and Answers

What does the February 10, 2022, ruling mean?

How does this ruling affect wolves in the Northern Rocky Mountains?

When does the court decision to vacate the delisting rule go into effect?

What is the legal status of gray wolves as of this ruling?

Is the Service continuing its status review of wolves in the western United States?

Is emergency listing an option for the Northern Rocky Mountain population?

Are wolf hunts going to stop as a result of the court decision?

How does this ruling affect wolves in Yellowstone National Park?

Where can …

Disturbance Reduces Fungal White-Rot Litter Mat Cover In A Wet Subtropical Forest, D. Jean Lodge, Ashley E. Van Beusekom, Grizelle González, Mareli Sánchez-Julia, Sarah Stankavich

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Fungi that bind leaf litter into mats and produce white-rot via degradation of lignin and other aromatic compounds influence forest nutrient cycling and soil fertility. Extent of white-rot litter mats formed by basidiomycete fungi in Puerto Rico decreased in response to disturbances—a simulated hurricane treatment executed by canopy trimming and debris addition in 2014, a drought in 2015, a treefall, and two hurricanes 10 days apart in September 2017. Percent fungal litter mat cover ranged from 0.4% after Hurricanes Irma and Maria to a high of 53% in forest with undisturbed canopy prior to the 2017 hurricanes, with means mostly …

Two Heads Are Better Than One: Current Landscape Of Integrating Qsp And Machine Learning, Tongli Zhang, Ioannis P. Androulakis, Peter Bonate, Limei Cheng, Tomáš Helikar, Jaimit Parikh, Christopher Rackauckas, Kalyanasundaram Subramanian, Carolyn R. Cho

Department of Biochemistry: Faculty Publications

Quantitative systems pharmacology (QSP) modeling is applied to address essential questions in drug development, such as the mechanism of action of a therapeutic agent and the progression of disease. Meanwhile, machine learning (ML) approaches also contribute to answering these questions via the analysis of multi-layer ‘omics’ data such as gene expression, proteomics, metabolomics, and high-throughput imaging. Furthermore, ML approaches can also be applied to aspects of QSP modeling. Both approaches are powerful tools and there is considerable interest in integrating QSP modeling and ML. So far, a few successful implementations have been carried out from which we have learned about …

Economics Of Cormorant Predation On Catfish Farms, Carole Engle, Ganesh Kumar, Terrel Christie, Brian S. Dorr, Brian Davis, Luke Roy, Anita Kelly

United States Department of Agriculture Wildlife Services: Staff Publications

The Double-crested Cormorant is the primary avian predator on catfish farms causing significant economic losses primarily due to 1) on-farm expenditures related to bird-management activities and 2) value of the catfish lost to cormorants. This comprehensive economic study quantified these two economic effects by surveying catfish farms in the delta regions of Mississippi and Arkansas. On-farm expenditures for bird scaring were used to quantify bird-management costs. Economic losses from fish consumed by cormorants were quantified by evaluating data from field studies of the abundance, distribution, and diet of cormorants in the Mississippi delta. This study found that catfish farmers …

Water Insecurity, Water Borrowing, And Psychosocial Stress Among Daasanach Pastoralists In Northern Kenya, Leslie Ford, Hilary J. Bethancourt, Zane Swanson, Rosemary Nzunza, Amber Wutich, Alexandra Brewis, Sera Young, David Almeida, Matthew J. Douglass, Emmanuel K. Ndiema, David R. Braun, Herman Pontzer, Asher Y. Rosinger

School of Natural Resources: Faculty Publications

This article quantifies Daasanach water insecurity experiences in Northern Kenya, examines how water insecurity is associated with water borrowing and psychosocial stress, and evaluates if water borrowing mitigates the stress from water insecurity. Of 133 households interviewed in 7 communities, 95% were water insecure and 74.4% borrowed water three or more times in the prior month. Regression analyses demonstrate water borrowing frequency moderates the relationship between water insecurity and psychosocial stress. Only those who rarely or never borrowed water reported greater stress with higher water insecurity. The coping mechanism of water borrowing may help blunt water insecurity-related stress.