Digital Commons Network^™

Microbiome Variation Across Populations Of Desert Halophyte Zygophyllum Qatarensis, Abdul Latif Khan, Lucas Dantas Lopes, Saqib Bilal, Sajjad Asaf, Kerri M. Crawford, Venkatesh Balan, Ahmed Al-Rawahi, Ahmed Al-Harrasi, Daniel P. Schachtman

Department of Agronomy and Horticulture: Faculty Publications

Microbial symbionts play a significant role in plant health and stress tolerance. However, few studies exist that address rare species of core-microbiome function during abiotic stress. In the current study, we compared the microbiome composition of succulent dwarf shrub halophyte Zygophyllum qatarensis Hadidi across desert populations. The results showed that rhizospheric and endosphere microbiome greatly varied due to soil texture (sandy and gravel). No specific bacterial amplicon sequence variants were observed in the core-microbiome of bulk soil and rhizosphere, however, bacterial genus Alcaligenes and fungal genus Acidea were abundantly distributed across root and shoot endospheres. We also analyzed major nutrients …

Electronic Reconstruction At The Polar (111)- Oriented Oxide Interface, S. Ryu, H. Zhou, Tula R. Paudel, N. Campbell, J. Podkaminer, C. W. Bark, T. Hernandez, D. D. Fong, Y. Zhang, L. Xie, X. Q. Pan, Evgeny Y. Tsymbal, M. S. Rzchowski, C. B. Eom

Department of Physics and Astronomy: Faculty Publications

Atomically flat (111) interfaces between insulating perovskite oxides provide a landscape for new electronic phenomena. For example, the graphene-like coordination between interfacial metallic ion layer pairs can lead to topologically protected states [Xiao et al., Nat. Commun. 2, 596 (2011) and A. Rüegg and G. A. Fiete, Phys. Rev. B 84, 201103 (2011)]. The metallic ion/metal oxide bilayers that comprise the unit cell of the perovskite (111) heterostructures require the interface to be polar, generating an intrinsic polar discontinuity [Chakhalian et al., Nat. Mater. 11, 92 (2012)]. Here, we investigate epitaxial heterostructures of (111)-oriented LaAlO …

Informing Management Of Henrys Lake, Idaho, Using An Integrated Catch-At-Age Model, Joshua L. Mccormick, Jennifer Vincent, Brett High, Darcy K. Mccarrick, Michael C. Quist

United States Geological Survey: Staff Publications

Henrys Lake, Idaho, supports a popular fishery for Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and Yellowstone Cutthroat Trout × Rainbow Trout O. mykiss hybrids. A majority of the adult population of fish in Henrys Lake are of hatchery origin that were stocked as fingerlings. The fishery is closed to angling during the late winter and spring months, but fisheries managers are considering opening the fishery year-round with catch-and-release- only regulations or with a two-fish bag limit during the extended season. However, there is concern that the proposed management actions may negatively affect the current fishery. Therefore, we developed an integrated …

Seabem: An Artificial Intelligence Powered Web Application To Predict Cover Crop Biomass, Aime Christian Tuyishime, Andrea Basche

Honors Program: Senior Projects (Public)

SEABEM, the Stacked Ensemble Algorithms Biomass Estimator Model, is a web application with a stacked ensemble of Machine Learning (ML) algorithms running on the backend to predict cover crop biomass for locations in Sub-Saharan. The SEABEM model was developed using a previously developed database of crop growth and yield that included site characteristics such as latitude, longitude, soil texture (sand, silt, and clay percentages), temperature, and precipitation. The goal of SEABEM is to provide global farmers, mainly small-scale African farmers, the knowledge they need before practicing and benefiting from cover crops while avoiding the expensive and time-consuming operations that come …

Using Quantitative Imaging For Personalized Medicine In Pancreatic Cancer: A Review Of Radiomics And Deep Learning Applications, Kiersten Preuss, Nate Thach, Xiaoying Liang, Michael Baine, Justin Chen, Chi Zhang, Huijing Du, Hongfeng Yu, Chi Lin, Michael A. Hollingsworth, Dandan Zheng

School of Biological Sciences: Faculty Publications

As the most lethal major cancer, pancreatic cancer is a global healthcare challenge. Personalized medicine utilizing cutting-edge multi-omics data holds potential for major breakthroughs in tackling this critical problem. Radiomics and deep learning, two trendy quantitative imaging methods that take advantage of data science and modern medical imaging, have shown increasing promise in advancing the precision management of pancreatic cancer via diagnosing of precursor diseases, early detection, accurate diagnosis, and treatment personalization and optimization. Radiomics employs manually-crafted features, while deep learning applies computer-generated automatic features. These two methods aim to mine hidden information in medical images that is missed by …

Commodity Prices, Climate And The High Plains Aquifer, Richard K. Perrin, Lilyan E. Fulginiti, Felipe Silva, Karina A. Schoengold

Cornhusker Economics

Crop prices and energy prices can affect the water level in an aquifer? Absolutely, yes, because over time, they affect the amount withdrawn for irrigation. Our recent research confirms that effect and provides estimates of the size of the effect on the High Plains Aquifer (HPA). The HPA underlies parts of eight states and 208 counties in the west-central United States (see Figure 1). This region produces more than 9% of US crop sales and relies on the aquifer for irrigation. These withdrawals for irrigation have contributed to a diminished stock of water in the aquifer that varies considerably across …

Collaborative Computing Support For Analysis Facilities Exploiting Software As Infrastructure Techniques, Maria Acosta Flechas, Garhan Attebury, Kenneth Bloom, Brian Bockelman, Lindsey Gray, Burt Holzman, Carl Lundstedt, Oksana Shadura, Nicholas Smith, John Thiltges

Holland Computing Center: Faculty Publications

Prior to the public release of Kubernetes it was difficult to conduct joint development of elaborate analysis facilities due to the highly non-homogeneous nature of hardware and network topology across compute facilities. However, since the advent of systems like Kubernetes and OpenShift, which provide declarative interfaces for building fault-tolerant and self-healing deployments of networked software, it is possible for multiple institutes to collaborate more effectively since resource details are abstracted away through various forms of hardware and software virtualization. In this whitepaper we will outline the development of two analysis facilities: “Coffea-casa” at University of Nebraska Lincoln and the “Elastic …

Spatiotemporal Variability In Swedish Lake Ecosystems, Tarsha Eason, Ahjond Garmestani, David G. Angeler

School of Natural Resources: Faculty Publications

Studying ecosystem dynamics is critical to monitoring and managing linked systems of humans and nature. Due to the growth of tools and techniques for collecting data, information on the condition of these systems is more widely available. While there are a variety of approaches for mining and assessing data, there is a need for methods to detect latent characteristics in ecosystems linked to temporal and spatial patterns of change. Resiliencebased approaches have been effective at not only identifying environmental change but also providing warning in advance of critical transitions in social-ecological systems (SES). In this study, we examine the usefulness …

A Farm-To-Fork Quantitative Microbial Exposure Assessment Of Β-Lactam-Resistant Escherichia Coli Among U.S. Beef Consumers, Yangjunna Zhang, John W. Schmidt, Terrance M. Arthur, Tommy L. Wheeler, Qi Zhang, Bing Wang

Department of Food Science and Technology: Faculty Publications

Integrated quantitative descriptions of the transmission of β-lactam-resistant Escherichia coli (BR-EC) from commercial beef products to consumers are not available. Here, a quantitative microbial exposure assessment model was established to simulate the fate of BR-EC in a farm-to-fork continuum and provide an estimate of BR-EC exposure among beef consumers in the U.S. The model compared the per-serving exposures from the consumption of intact beef cuts, non-intact beef cuts, and ground beef. Additionally, scenario analysis was performed to evaluate the relative contribution of antibiotic use during beef cattle production to the level of human exposure to BR-EC. The model predicted mean …

Tiny Earth, Tinier Microbes: An Experiential Learning Approach To Antibiotic Discovery, Emily Kassing

Honors Program: Senior Projects (Public)

Antimicrobial resistance is one of the greatest global health challenges of the 21^st century as antibiotic discovery has slowed even as scientific knowledge about AMR has progressed. At the same time, science education has turned to active learning approaches like CUREs, or course-based undergraduate research experiences, to achieve educational objectives while engaging students in real-life research. The Tiny Earth Project is a global research initiative that seeks to crowdsource antibiotic discovery by recruiting undergraduate students to screen soil samples for antibiotic producers. The goal of this study was to determine the viability of translating the Tiny Earth programming to …

Split Classification Model For Complex Clustered Data, Katherine Gerot

Honors Program: Senior Projects (Public)

Classification in high-dimensional data has generated tremendous interest in a multitude of fields. Data in higher dimensions often tend to reside in non-Euclidean metric space. This prevents Euclidean-based classification methodologies, such as regression, from reliably modeling the data. Many proposed models rely on computationally-complex embedding to convert the data to a more usable format. Others, namely the Support Vector Machine, rely on kernel manipulation to implicitly describe the "feature space" to arrive at a non-linear decision boundary. The proposed methodology in this paper seeks to classify complex data in a relatively computationally-simple and explainable manner.

A Qualitative Analysis Of How Individuals Utilized The Twitter Hashtags #Notokay And #Metoo To Comment On The Perpetration Of Interpersonal Violence, Katherine W. Bogen, Prachi H. Bhuptani, Michelle Haikalis, Lindsay M. Orchowski

Department of Psychology: Faculty Publications

The present study examined how individuals describe the nature of interpersonal violence perpetrated against them using the Twitter hashtags #NotOkay and #MeToo. Iterative qualitative coding of 437 tweets resulted in four major themes (i.e., the nature of violence and tactics utilized, the identity of the perpetrator, the location of the assault, and whether the perpetrator was held accountable). Subthemes nested beneath perpetrator identity included whether the perpetrator was known, as well as perpetrator gender identity. Subthemes nested beneath perpetrator tactic included the presence of multiple perpetrators, whether the assault was a crime of opportunity, engagement in physical aggression, utilization of …

The Effect Of Store-To-Store Energy Transfers On The Global Dynamics Of Aircraft, Guilherme Mainieri Eymael

Honors Program: Senior Projects (Public)

This study analyzes the energy transfer mechanisms when nonlinear devices (stores) are attached to a linear model airplane. For that, a reduced-order model (ROM) was derived to simulate the first two flexible modes of vibration of the primary structure (aircraft) with one store in each wing. Each store can either be locked or unlocked. When locked, it only contributes as mass-effect, and when unlocked, it adds nonlinearity to the system. Simulations were then performed with either both stores locked, one store unlocked, or both stores unlocked. It was found that the attachment of nonlinear stores in the ROM changes the …

The Design Of An Agricultural Youth-Centered Rural Development Program In Rwanda, Laetitia Igiraneza Sinyigenga

Honors Program: Senior Projects (Public)

Rwanda is primarily a rural, young, and agriculture-based country. The referred variables- agriculture, rural population, and youth- can be creatively merged to engage and empower youth for rural development. This paper indicates the utilization of cross-disciplinary knowledge to design an agricultural youth-centered rural development program in Rwanda. The program uses the interdependence of economic sectors (agriculture and education) with resources (environmental & natural resources and human resources) to boost rural community development. The program’s main activities- mentorship, agribusiness training, tutoring, exposure visits, and community work- highly reflect the requirement for advancing the selected main economic sectors and resources. There is …

Pitfalls And Guidelines For Using Time-Based Git Data, Samuel W. Flint, Jigyasa Chauhan, Robert Dyer

School of Computing: Faculty Publications

Many software engineering research papers rely on time-based data (e.g., commit timestamps, issue report creation/update/close dates, release dates). Like most real-world data however, time-based data is often dirty. To date, there are no studies that quantify how frequently such data is used by the software engineering research community, or investigate sources of and quantify how often such data is dirty. Depending on the research task and method used, including such dirty data could affect the research results. This paper presents an extended survey of papers that utilize time-based data, published in the Mining Software Repositories (MSR) conference series. Out of …

Exploration Of Piccirillo's Trick On Low Crossing Number Knots, Gabriel Adams

Honors Program: Senior Projects (Public)

Piccirillo recently discovered a process that can be applied to an unknotting number one knot to convert it into a different knot called a Piccirillo dual. Piccirillo duals have been shown to have the same n-trace and the same sliceness. However, exploration and knowledge of this process is limited. We were able to generate the Piccirillo duals for several low-crossing number knots. We offer the foundation for and explain how to follow the Piccirillo process and generate Piccirillo duals. This talk assumes little knowledge of knot theory and concisely gives newcomers a clear introduction to get started working with Piccirillo …

Climate Change Adaptation, Migration, And Promising Developments For Pacific Island States, Ashley Jonas

Department of Environmental Studies: Undergraduate Student Theses

The people of the Pacific Islands face an existential crisis due to climate change, despite the fact that they are the least responsible for contributing to carbon emissions. The effects of climate change, namely sea-level rise, pose a verified threat to low-lying islands, infiltrating water supplies, crops, and infrastructure. As a result, there is a need for improved solutions for adapting to the impacts of climate change and for easier access to legal migration pathways when the consequences are insurmountable. Through comparative discourse analysis of scholarly sources, intergovernmental policies, and non-governmental organizations, the thesis finds that Small Island Developing States …

Canopy Spectral Reflectance Detects Oak Wilt At The Landscape Scale Using Phylogenetic Discrimination, Gerard Sapes, Cathleen Lapadat, Anna K. Schweiger, Jennifer Juzwik, Rebecca Montgomery, Hamed Gholizadeh, Philip A. Townsend, John A. Gamon, Jeannine Cavender-Bares

School of Natural Resources: Faculty Publications

The oak wilt disease caused by the invasive fungal pathogen Bretziella fagacearum is one of the greatest threats to oak-dominated forests across the Eastern United States. Accurate detection and monitoring over large areas are necessary for management activities to effectively mitigate and prevent the spread of oak wilt. Canopy spectral reflectance contains both phylogenetic and physiological information across the visible near-infrared (VNIR) and short-wave infrared (SWIR) ranges that can be used to identify diseased red oaks. We develop partial least square discriminant analysis (PLS-DA) models using airborne hyperspectral reflectance to detect diseased canopies and assess the importance of VNIR, SWIR, …

Determining Pairwise Interactions To Predict Species Interactions In A Complex Community Of Gut Bacteria., Makenzie Maroney

Honors Program: Senior Projects (Public)

The human gastrointestinal (GI) tract houses a diverse and expansive microbial community known as the microbiota. The relationship between the host and the microbiota is considered to be mutualistic, as trillions of bacteria that reside in the hospitable GI tract can assist in essential host functions, including contributing to metabolism and immunity against disease. An important subpopulation of the GI microbiota is the mucin-associated biofilm that is comprised of a dense layer of bacteria that forms on the GI mucin layer. The mucin layer provides an alternative niche to the GI lumen; the glycans of the mucin and the subsequent …

Search For Strongly Interacting Massive Particles Generating Trackless Jets In Proton–Proton Collisions At √S = 13tev, A. Tumasyan

Department of Physics and Astronomy: Faculty Publications

A search for dark matter in the form of strongly interacting massive particles (SIMPs) using the CMS detector at the LHC is presented. The SIMPs would be produced in pairs that manifest themselves as pairs of jets without tracks. The energy fraction of jets carried by charged particles is used as a key discriminator to suppress efficiently the large multijet background, and the remaining background is estimated directly from data. The search is performed using proton–proton collision data corresponding to an integrated luminosity of 16.1 fb⁻¹, collected with the CMS detector in 2016. No significant excess of events …

Seasonally And Diurnally Varying Cold Front Effects Along The Minnesotan North Shore Of Lake Superior, Matthew S. Van Den Broeke

Department of Earth and Atmospheric Sciences: Faculty Publications

Cold fronts are typically associated with cooling, drying and a strengthening wind that shifts to have a northerly component. Cold front effects at a particular point, however, are dependent upon pre-existing air mass characteristics. Here, we examine 634 passages of synoptic-scale cold fronts in northeastern Minnesota from 2010 to 2018. While these fronts are associated with the expected effects in some areas, they are often associated with warming and enhanced drying in the region directly influenced by an air mass from Lake Superior (coastal sites). Coastal sites experience warming during more than half of cold frontal passages, in contrast to …

Virtual Training Prepared For The Former Afghanistan Ministry Of Energy And Water—Streamgaging, Fluvial Sediment Sampling, Bathymetry, And Streamflow And Sediment Modeling, Joel T. Groten, Joshua F. Valder, Brenda K. Densmore, Logan W. Neal, Justin Krahulik, Thomas J. Mack

United States Geological Survey: Water Reports and Publications

The United States Geological Survey (USGS) created a virtual training series for the Afghanistan Ministry of Energy and Water (MEW), now known as the National Water Affairs Regulation Authority (NWARA), to provide critical hydrological training as an alternative to an in-person training. The USGS was scheduled to provide in-person surface-water training for NWARA during 2020; however, travel was halted because of the Coronavirus disease 2019 (COVID–19) pandemic. The virtual training consisted of prerecorded and live presentations that were scheduled during 4 weeks in August 2021. However, the training was halted after the second week due to the collapse of the …

Resource Selection Of Deer Hunters In Georgia's Appalachian Mountains, Jacalyn P. Rosenberger, Andrew R. Little, Adam C. Edge, Cheyenne J. Yates, David A. Osborn, Charlie H. Killmaster, Kristina L. Johannsen, Karl V. Miller, Gino J. D'Angelo

School of Natural Resources: Faculty Publications

White‐tailed deer (Odocoileus virginianus) and hunters on 2 Wildlife Management Areas (WMAs) within the Chattahoochee National Forest of northern Georgia, USA, significantly declined in number from the 1980s to 2018. Managers were interested in understanding how they could manipulate hunter distribution according to deer management goals. To understand the spatial distribution of hunting pressure and factors driving hunter resource selection, we analyzed GPS tracking data from 58 deer hunters over the 2018–2019 and 2019–2020 hunting seasons. We evaluated hunter selection on 3 spatial scales relative to elevation, slope, and distance from roads, trails, wildlife openings, deciduous forest, mixed …

Design Of A Week-Long Introduction To Engineering Summer Camp To Increase Interest And Eagerness Of Stem In Young Children, Beth Cannon

Honors Program: Senior Projects (Public)

For this creative project, a one-week camp curriculum was designed for elementary students (Grades 3-5) to introduce engineering. This work includes a rationale and camp curriculum. The rationale describes the research-based design of the curriculum. It outlines engineering basics and why and how to teach engineering to young students. The curriculum intends to introduce engineering to young children and excite the possibility of a future career. The following engineering disciplines are presented throughout the week of camp: mechanical, environmental, civil, electrical, and chemical. The first day of camp focuses on the basics of engineering. Following that, each day of camp …

Application Of Linear Algebra Within The High School Curriculum: Designing Activities To Stimulate An Interest In Upper-Level Math, Shelby Castle

Honors Program: Senior Projects (Public)

This senior project outlines potential lecture activities for a guest speaker or teacher in a high school classroom to present interesting applications of linear algebra. These applications are meant to be pertinent to things students at this age level are already learning or are interested in. The activities are designed such that the ideas of upper-level math are introduced in a very guided and non-intense way. The intent of the activities is mostly applications and interesting results rather than mathematical lecturing or instruction.

The high school level courses explored in this project are chemistry, economics, and health/physical education. For these …

Agricultural Carbon Markets: How Could They Work?, Andrew Havens

Department of Environmental Studies: Undergraduate Student Theses

The resurgence of voluntary markets in which consumers can purchase carbon credits generated by agricultural carbon sequestration has brought up many questions for farmers looking to potentially enter the market. Past carbon markets, such as the Chicago Climate Exchange, ended when a recession hit, causing demand for credits to swiftly decline. How can modern voluntary markets face these challenges along with new ones and be successful? This research paper, completed as an undergraduate thesis project at the University of Nebraska-Lincoln, examines the economic and scientific factors behind soil carbon sequestration credits. An extended literature review combined with estimation of a …

Agricultural Carbon Markets: How Could They Work?, Andrew Havens

Honors Program: Senior Projects (Public)

The resurgence of voluntary markets in which consumers can purchase carbon credits generated by agricultural carbon sequestration has brought up many questions for farmers looking to potentially enter the market. Past carbon markets, such as the Chicago Climate Exchange, ended when a recession hit, causing demand for credits to swiftly decline. How can modern voluntary markets face these challenges along with new ones and be successful? This research paper, completed as an undergraduate thesis project at the University of Nebraska-Lincoln, examines the economic and scientific factors behind soil carbon sequestration credits. An extended literature review combined with estimation of a …

Analysis Of Groundwater Recharge In Mongolian Drylands Using Composite Vadose Zone Modeling, Khulan Batsukh, Vitaly A. Zlotnik, Paolo Nasta

Department of Earth and Atmospheric Sciences: Faculty Publications

Knowledge of groundwater recharge (GR) is important for the effective management of water resources under semi-arid continental climates. Unfortunately, studies and data in Mongolia are limited due to the constraints in funding and lack of research infrastructures. Currently, the wide accessibility of freely available global-scale digital datasets of physical and chemical soil properties, weather data, vegetation characteristics, and depths to the water table offers new tools and basic information that can support low-cost physically based and process-oriented models. Estimates of GR over 41 study sites in Mongolia were obtained using HYDRUS-1D in a 2-m-thick soil profile with root …

Lefschetz Properties Of Some Codimension Three Artinian Gorenstein Algebras, Nancy Abdallah, Nasrin Altafi, Anthony Iarrobino, Alexandra Seceleanu, Joachim Yaméogo

Department of Mathematics: Faculty Publications

Codimension two Artinian algebras A have the strong and weak Lefschetz properties provided the characteristic is zero or greater than the socle degree. It is open to what extent such results might extend to codimension three AG algebras - the most promising results so far have concerned the weak Lefschetz property for such algebras. We here show that every standard-graded codimension three Artinian Gorenstein algebra A having low maximum value of the Hilbert function - at most six - has the strong Lefschetz property, provided that the characteristic is zero. When the characteristic is greater than the socle degree of …

Communicating Science With Little (Or No) Budget: Design Rules And Tricks For The Non-Artist, Kiyomi D. Deards

University of Nebraska-Lincoln Libraries: Presentations

This presentation is for the self-proclaimed non-artist scientist who wants to communicate science effectively but has little (or no) budget to hire professionals to create and edit images (artwork, tables, graphs), websites, presentation slides, and publications. For this scientist, learning basic easy-to-apply design rules and tricks can facilitate the preparation of scientific material. The speaker has experience designing formal and informal presentations, creating videos and podcasts, working with graphic designers, and designing websites. The speaker will provide tips and suggestions based on her own experiences, collaborations, and acting as a consultant for informal science communication projects. Moreover, strategies for using …