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Articles 691 - 720 of 5498
Full-Text Articles in Entire DC Network
Invasive Predators Affect Community-Wide Pollinator Visitation, Christina T. Liang, Aaron B. Shiels, William P. Haines, Manette E. Sandor, Clare E. Aslan
Invasive Predators Affect Community-Wide Pollinator Visitation, Christina T. Liang, Aaron B. Shiels, William P. Haines, Manette E. Sandor, Clare E. Aslan
United States Department of Agriculture Wildlife Services: Staff Publications
Disruption of plant–pollinator interactions by invasive predators is poorly understood but may pose a critical threat for native ecosystems. In a multiyear field experiment in Hawai’i, we suppressed abundances of globally invasive predators and then observed insect visitation to flowers of six native plant species. Three plant species are federally endangered (Haplostachys haplostachya, Silene lanceolata, Tetramolopium arenarium) and three are common throughout their range (Bidens menziesii, Dubautia linearis, Sida fallax). Insect visitors were primarily generalist pollinators, including taxa that occur worldwide such as solitary bees (e.g., Lasioglossum impavidum), social bees (e.g., …
Spatial Risk Modeling Of Cattle Depredation By Black Vultures In The Midwestern United States, Brandon M. Quinby, Bryan M. Kluever, Grant N. Burcham, Lee Humberg, Landon R. Jones, Marian L. Wahl, Patrick A. Zollner
Spatial Risk Modeling Of Cattle Depredation By Black Vultures In The Midwestern United States, Brandon M. Quinby, Bryan M. Kluever, Grant N. Burcham, Lee Humberg, Landon R. Jones, Marian L. Wahl, Patrick A. Zollner
United States Department of Agriculture Wildlife Services: Staff Publications
ock operations through depredation of stock are a cause of human‐wildlife conflict. Management of such conflict requires identifying environmental and non‐environmental factors specific to a wildlife species' biology and ecology that influence the potential for livestock depredation to occur. Identification of such factors can improve understanding of the conditions placing livestock at risk. Black vultures (Coragyps atratus) have expanded their historical range northward into the midwestern United States. Concomitantly, an increase in concern among agricultural producers regarding potential black vulture attacks on livestock has occurred. We estimated area with greater or lesser potential for depredation of domestic cattle by black …
Capture-Recapture Reveals Heterogeneity In Habitat-Specific Mongoose Densities And Spatiotemporal Variability In Trapping Success In St. Kitts, West Indies, Caroline C. Sauvé, Are R. Berentsen, Amy Gilbert, Anne Conan, Luis Cruz-Martinez, Patrick A. Leighton
Capture-Recapture Reveals Heterogeneity In Habitat-Specific Mongoose Densities And Spatiotemporal Variability In Trapping Success In St. Kitts, West Indies, Caroline C. Sauvé, Are R. Berentsen, Amy Gilbert, Anne Conan, Luis Cruz-Martinez, Patrick A. Leighton
United States Department of Agriculture Wildlife Services: Staff Publications
The small Indian mongoose (Urva auropunctata) is a non-native invasive species across the Caribbean and a rabies reservoir on at least four islands in the region. Although previous studies reported mongoose density estimates in their non-native range, the variability in trapping designs, study seasonality, and analytical methods among studies precludes direct comparisons. This study is the first to report mongoose densities for the island of St. Kitts, West Indies. Our objective was to quantify mongoose densities across four habitats characteristic for the island. High capture and recapture rates in this study resulted in detailed estimates of spatial heterogeneity …
Rodents In Agriculture: A Broad Perspective, Gary Witmer
Rodents In Agriculture: A Broad Perspective, Gary Witmer
United States Department of Agriculture Wildlife Services: Staff Publications
The largest taxonomic group of mammals is rodents, with over 2200 species known around the world [1]. More recently, it was stated that over 2500 species exist [2]. Many species exist on all continents, with the exception of Antarctica. Rodents have adapted to all ecosystems of the world, including tundra, alpine, temperate forests, grasslands, arid regions, and aquatic systems. They provide many ecosystem functions, including soil aeration and mixing, seed and spore dispersal, vegetation succession, and being an important food source for predatory animals. Some species of rodents are even consumed by people in some parts of the world. Most …
Transmission Of Antibiotic Resistance At The Wildlife-Livestock Interface, Shinyoung Lee, Peixin Fan, Ting Liu, Anni Yang, Raoul K. Boughton, Kim M. Pepin, Ryan S. Miller, Kwangcheol Casey Jeong
Transmission Of Antibiotic Resistance At The Wildlife-Livestock Interface, Shinyoung Lee, Peixin Fan, Ting Liu, Anni Yang, Raoul K. Boughton, Kim M. Pepin, Ryan S. Miller, Kwangcheol Casey Jeong
United States Department of Agriculture Wildlife Services: Staff Publications
Antibiotic-resistant microorganisms (ARMs) are widespread in natural environments, animals (wildlife and livestock), and humans, which has reduced our capacity to control life threatening infectious disease. Yet, little is known about their transmission pathways, especially at the wildlife-livestock interface. This study investigated the potential transmission of ARMs and antibiotic resistance genes (ARGs) between cattle and wildlife by comparing gut microbiota and ARG profiles of feral swine (Sus scrofa), coyotes (Canis latrans), cattle (Bos taurus), and environmental microbiota. Unexpectedly, wild animals harbored more abundant ARMs and ARGs compared to grazing cattle. Gut microbiota of cattle was …
Dammed Water Quality—Longitudinal Stream Responses Below Beaver Ponds In The Umpqua River Basin, Oregon, John R. Stevenson, Jason B. Dunham, Steven M. Wondzell, Jimmy Taylor
Dammed Water Quality—Longitudinal Stream Responses Below Beaver Ponds In The Umpqua River Basin, Oregon, John R. Stevenson, Jason B. Dunham, Steven M. Wondzell, Jimmy Taylor
United States Department of Agriculture Wildlife Services: Staff Publications
Beaver-related restoration (BRR) has gained popularity as a means of improving stream ecosystems, but the effects are not fully understood. Studies of dissolved oxygen (DO) and water temperature, key water quality metrics for salmonids, have demonstrated improved conditions in some cases, but warming and decreased DO have been more commonly reported in meta-analyses. These results point to the contingencies that can influence outcomes from BRR. We examined water quality related to beaver ponds in a diverse coastal watershed (Umpqua River Basin, OR, USA). We monitored water temperature 0–400m above and below beaver ponds and at pond surfaces and bottoms across …
Economic Damages Of Wild Pigs In Non-Traditional Areas: From The Fairway To The After Life, Sophie Mckee, Julie Elser, Maryfrances Miller, Lirong Liu, Ryan Miller, Steven S. Shwiff, Stephanie A. Shwiff
Economic Damages Of Wild Pigs In Non-Traditional Areas: From The Fairway To The After Life, Sophie Mckee, Julie Elser, Maryfrances Miller, Lirong Liu, Ryan Miller, Steven S. Shwiff, Stephanie A. Shwiff
United States Department of Agriculture Wildlife Services: Staff Publications
Invasive wild pigs are widely known to cause damage to agricultural properties and commodities, but less has been reported about damages to other types of property. A survey was distributed to golf courses and cemeteries across Texas to explore the extent of damage these properties experience. While both property types reported significant damages, golf courses were found to experience more damage than cemeteries. Using average reported costs and predicted county-level damage, total costs for all golf courses and cemeteries across the state were estimated to exceed $1.6 million USD per year.
Sars-Cov-2 In Wildlife: Q & A With Alan B. Franklin, Alan B. Franklin
Sars-Cov-2 In Wildlife: Q & A With Alan B. Franklin, Alan B. Franklin
United States Department of Agriculture Wildlife Services: Staff Publications
Welcome Dr Franklin and thank you for joining us to help social workers increase their knowledge about the interconnectedness of humans, other mammals, and the environment. Let's begin with zoonosis.
Viruses can be transferred from wild and domestic animals to humans in a process called zoonosis.
Strength In Numbers: Avian Influenza A Virus Transmission To Poultry From A Flocking Passerine, J. Jeffrey Root, Jeremy W. Ellis, Susan A. Shriner
Strength In Numbers: Avian Influenza A Virus Transmission To Poultry From A Flocking Passerine, J. Jeffrey Root, Jeremy W. Ellis, Susan A. Shriner
United States Department of Agriculture Wildlife Services: Staff Publications
The effects of flock size of European starlings (Sturnus vulgaris) was experimentally manipulated to assess the potential of influenza A virus (IAV; H4N6) transmission from a flocking passerine to bobwhite quail (Colinus virginianus) through shared food and water resources to mimic starling intrusions into free-range and backyard poultry operations. Of the three starling flock sizes tested (n = 30, n = 20 and n = 10), all successfully transmitted the virus to all or most of the quail in each animal room (6/6, 6/6 and 5/6) by the end of the experimental period, as determined by seroconversion and/or viral RNAshedding. …
Social Learning Of Avoidance Behaviors: Trap Aversion In Captive Coyotes, Julie Young, Jeffrey T. Schultz, Buck Jolley, Nekol Basili, John P. Draper
Social Learning Of Avoidance Behaviors: Trap Aversion In Captive Coyotes, Julie Young, Jeffrey T. Schultz, Buck Jolley, Nekol Basili, John P. Draper
United States Department of Agriculture Wildlife Services: Staff Publications
Social learning can help animals gain knowledge rapidly and may enhance survival. In species that are subjected to capture in foothold traps and then lethally removed, such as the coyote (Canis latrans), learning to avoid traps is critical to survival. Here, we tested social learning of trap avoidance behavior in three experimental scenarios with captive coyotes. In the first experiment, coyotes observed an unfamiliar coyote get captured in a foothold trap (i.e., demonstrator) or did not observe a demonstrator and were therefore naïve to traps. The coyotes that observed a demonstrator showed similar latencies to approach the trap …
Predicting Consistent Foraging Ecologies Of Migrating Waterbirds: Using Stable Isotope And Parasite Measurements As Indicators Of Landscape Use, Kate L. Sheehan, Brian S. Dorr, Stephen A. Clements, Terrel W. Christie, Katie Hanson-Dorr, Scott A. Rush, J. Brian Davis
Predicting Consistent Foraging Ecologies Of Migrating Waterbirds: Using Stable Isotope And Parasite Measurements As Indicators Of Landscape Use, Kate L. Sheehan, Brian S. Dorr, Stephen A. Clements, Terrel W. Christie, Katie Hanson-Dorr, Scott A. Rush, J. Brian Davis
United States Department of Agriculture Wildlife Services: Staff Publications
The emergence of novel human pathogens is frequently linked with zoonotic events and human-wildlife interactions that promote disease transmission. Consequently, surveillance of wildlife populations for candidate diseases that could spread to humans is beneficial, but requires widespread collections of numerous samples. A legitimate means to acquire large sample sizes of waterfowl is through cooperation between researchers and hunters, who also work in concert with natural resource managers, landowners, and agricultural entities -e.g., aquaculture facilities. In addition to understanding the occurrence and spread of parasites and pathogens by birds, these samples can be used to answer questions about the ecology of …
Summer Habitat Use And Movements Of Invasive Wild Pigs (Sus Scrofa) In Canadian Agro-Ecosystems, Corey J. Kramer, Melanie R. Boudreau, Ryan S. Miller, Ryan Powers, Kurt C. Vercauteren, Ryan K. Brook
Summer Habitat Use And Movements Of Invasive Wild Pigs (Sus Scrofa) In Canadian Agro-Ecosystems, Corey J. Kramer, Melanie R. Boudreau, Ryan S. Miller, Ryan Powers, Kurt C. Vercauteren, Ryan K. Brook
United States Department of Agriculture Wildlife Services: Staff Publications
Resource selection informs understanding of a species’ ecology and is especially pertinent for invasive species. Since introduced to Canada, wild pigs (Sus scrofa Linnaeus, 1978) remain understudied despite recognized negative impacts on native and agricultural systems globally. Elsewhere in North America, pigs typically use forests and forage in agricultural crops. We hypothesized Canadian wild pigs would behave similarly, and using GPS locations from 15 individuals, we examined diel and seasonal resource selection and movement in the Canadian prairie region. Forests were predominately selected during the day, while corn (Zea mays L.), oilseeds, and wheat (Triticum aestivum L.) …
Ontario’S Double-Crested Cormorant Hunting Season May Be Ineffective But That Doesn’T Mean There Are No Conflict Issues, Brian S. Dorr, David G. Fielder, James R. Jackson, James F. Farquhar, Douglas W. Schultz, Randall M. Claramunt
Ontario’S Double-Crested Cormorant Hunting Season May Be Ineffective But That Doesn’T Mean There Are No Conflict Issues, Brian S. Dorr, David G. Fielder, James R. Jackson, James F. Farquhar, Douglas W. Schultz, Randall M. Claramunt
United States Department of Agriculture Wildlife Services: Staff Publications
No abstract provided.
Managing Roof Rats In Citrus Orchards: Initial Efforts Toward Building An Integrated Pest Management Program, Roger A. Baldwin, Justine A. Smith, Ryan Meinerz, Aaron B. Shiels
Managing Roof Rats In Citrus Orchards: Initial Efforts Toward Building An Integrated Pest Management Program, Roger A. Baldwin, Justine A. Smith, Ryan Meinerz, Aaron B. Shiels
United States Department of Agriculture Wildlife Services: Staff Publications
Roof rats cause extensive damage in orchards throughout the world. Integrated Pest Management (IPM) systems are the best option for managing rodents, yet few management systems have been developed and tested to control roof rats in agricultural settings. We initiated a study in 2020 to provide the foundation for an IPM program to manage roof rats in California citrus orchards. Our initial efforts centered on developing effective monitoring strategies for roof rats to determine when management actions are needed, assessing rat movement patterns to determine proper placement of management tools, and conducting initial tests of Goodnature A24 self-resetting traps and …
Development Of A Novel Vertebrate Pesticide For The Invasive Small Indian Mongoose, Carmen Antaky, Steven C. Hess, Israel Leinbach, Robert T. T. Sugihara, Emily W. Ruell, Shane Siers
Development Of A Novel Vertebrate Pesticide For The Invasive Small Indian Mongoose, Carmen Antaky, Steven C. Hess, Israel Leinbach, Robert T. T. Sugihara, Emily W. Ruell, Shane Siers
United States Department of Agriculture Wildlife Services: Staff Publications
Small Indian mongooses are detrimental introduced predators in the United States, where they depredate native species, serve as vector of disease, and threaten public safety. Due to the risk of accidental introduction to mongoose-free islands, high cost and limitations to trapping, and no national (Section 3) Environmental Protection Agency (EPA)-registered toxicants for mongoose control, there is a need for an efficacious toxic bait for mongooses for use in conservation areas and at points of entry in the United States. Over the last five years, the National Wildlife Research Center (NWRC) worked to develop a toxic bait for mongooses for registration …
Abert’S Squirrel Management In Support Of Endangered Mount Graham Red Squirrel Recovery In Arizona, Aaron R. Morehead, Christopher Carillo, Holly Hicks, Wade Sanders, David L. Bergman
Abert’S Squirrel Management In Support Of Endangered Mount Graham Red Squirrel Recovery In Arizona, Aaron R. Morehead, Christopher Carillo, Holly Hicks, Wade Sanders, David L. Bergman
United States Department of Agriculture Wildlife Services: Staff Publications
Recovery of the endangered Mount Graham red squirrel (MGRS) will likely be long and challenging. Its limited habitat, isolation to Pinaleño Mountain range, and demographic characteristics restrict its ability to rebound quickly from threats that impact both the squirrel and its habitat. Currently, threats to the MGRS include habitat degradation and loss through high-severity wildfire, fire suppression activities, insect outbreaks, climate change, and human development, and predation, as well as competition with Abert’s squirrels. The most recent wildfire in 2017 impacted over 48,000 acres of already reduced habitat. A critical first step is to protect and manage the remaining population …
Migratory Movements And Home Ranges Of Geographically Distinct Wintering Populations Of A Soaring Bird, Ryo Ogawa, J. Brian Davis, D. Tommy King, L. Wes Burger, Bronson K. Strickland, Marsha A. Sovada, Guiming Wang, Fred L. Cunningham
Migratory Movements And Home Ranges Of Geographically Distinct Wintering Populations Of A Soaring Bird, Ryo Ogawa, J. Brian Davis, D. Tommy King, L. Wes Burger, Bronson K. Strickland, Marsha A. Sovada, Guiming Wang, Fred L. Cunningham
United States Department of Agriculture Wildlife Services: Staff Publications
Migratory soaring birds exhibit spatiotemporal variation in their circannual movements. Nevertheless, it remains uncertain how different winter environments affect the circannual movement patterns of migratory soaring birds. Here, we investigated annual movement strategies of American white pelicans Pelecanus erythrorhynchos (hereafter, pelican) from two geographically distinct wintering grounds in the Southern and Northern Gulf of Mexico (GOM).We hypothesized that hourly movement distance and home range size of a soaring bird would differ between different geographic regions because of different thermals and wind conditions and resource availability. We calculated average and maximum hourly movement distances and seasonal home ranges of GPS-tracking pelicans. …
Invasive Rodent Responses To Experimental And Natural Hurricanes With Implications For Global Climate Change, Aaron B. Shiels, Gabriela E. Ramírez De Arellano, Laura Shiels
Invasive Rodent Responses To Experimental And Natural Hurricanes With Implications For Global Climate Change, Aaron B. Shiels, Gabriela E. Ramírez De Arellano, Laura Shiels
United States Department of Agriculture Wildlife Services: Staff Publications
Hurricanes cause dramatic changes to forests by opening the canopy and depositing debris onto the forest floor. How invasive rodent populations respond to hurricanes is not well understood, but shifts in rodent abundance and foraging may result from scarce fruit and seed resources that follow hurricanes. We conducted studies in a wet tropical forest in Puerto Rico to better understand how experimental (canopy trimming experiment) and natural (Hurricane Maria) hurricane effects alter populations of invasive rodents (Rattus rattus [rats] and Mus musculus [mice]) and their foraging behaviors. To monitor rodent populations, we used tracking tunnels (inked and baited cards …
Improving Efficiency Of Prairie Dog Surveys By Using A Small Copter Drone, Aaron B. Shiels, J. W. Fischer, Danika Spock, Meagan Allira
Improving Efficiency Of Prairie Dog Surveys By Using A Small Copter Drone, Aaron B. Shiels, J. W. Fischer, Danika Spock, Meagan Allira
United States Department of Agriculture Wildlife Services: Staff Publications
Prairie dogs are an accessible and enjoyed wildlife species in Colorado that require occasional surveys because populations can change abruptly due to plague outbreaks or human-induced control. We evaluated the use of small copter drones at four prairie dog colonies on Open Space and Mountain Parks lands, City of Boulder, to determine if this methodology improves efficiency over ground-based survey methods. We counted prairie dogs and burrows using two types of drones (DJI Matric 210 and Autel Evo II) at altitudes 100', 150', and 400' (burrows only). We recorded video and merged still images into orthomosaics prior to having USDA …
Susceptibility Of Wild Canids To Sars-Cov-2, Stephanie M. Porter, Aim E. Hartwig, Helle Bielefeldt-Ohmann, Angela M. Bosco-Lauth, J. Jeffrey Root
Susceptibility Of Wild Canids To Sars-Cov-2, Stephanie M. Porter, Aim E. Hartwig, Helle Bielefeldt-Ohmann, Angela M. Bosco-Lauth, J. Jeffrey Root
United States Department of Agriculture Wildlife Services: Staff Publications
We assessed 2 wild canid species, red foxes (Vulpes vulpes) and coyotes (Canis latrans), for susceptibility to SARS-CoV-2. After experimental inoculation, red foxes became infected and shed infectious virus. Conversely, experimentally challenged coyotes did not become infected; therefore, coyotes are unlikely to be competent hosts for SARS-CoV-2.
Throughout the COVID-19 pandemic, multiple instances of natural infections with SARS-CoV-2 have been reported in pet dogs, likely after exposure to an infected human (1–3). Domestic dogs appear to be minimally susceptible to SARS-CoV-2, as indicated by experimental inoculations resulting in reverse transcription PCR–positive samples and low titer antibody responses but no clinical …
Exploring The Value Of A Global Gene Drive Project Registry, Riley I. Taitingfong, Antoinette J. Piaggio, Cinnamon S. Bloss, Et Al.
Exploring The Value Of A Global Gene Drive Project Registry, Riley I. Taitingfong, Antoinette J. Piaggio, Cinnamon S. Bloss, Et Al.
United States Department of Agriculture Wildlife Services: Staff Publications
Recent calls to establish a global project registry before releasing any gene-drive-modified organisms (GDOs) have suggested a registry could be valuable to coordinate research, collect data to monitor and evaluate potential ecological impacts, and facilitate transparent communication with community stakeholders and the general public. Here, we report the results of a multidisciplinary expert workshop on GDO registries convened on 8–9 December 2020 involving 70 participants from 14 countries. Participants had expertise in gene drive design, conservation and population modeling, social science, stakeholder engagement, governance and regulation, international policy, and vector control; they represented 45 organizations, spanning national and local governmental …
Diversity And Phylogenetic Relationships Of ‘Tetraphyllidean’ Clade 3 (Cestoda) Based On New Material From Orectolobiform Sharks In Australia And Taiwan, Janine N. Caira, Kirsten Jensen
Diversity And Phylogenetic Relationships Of ‘Tetraphyllidean’ Clade 3 (Cestoda) Based On New Material From Orectolobiform Sharks In Australia And Taiwan, Janine N. Caira, Kirsten Jensen
Harold W. Manter Laboratory of Parasitology: Library Materials
In an effort to expand knowledge of Clade 3—one of the ten clades that compose the non-monophyletic order ‘Tetraphyllidea’ all current members of which parasitise orectolobiform sharks—we targeted species of orectolobiform sharks that had not previously been examined for ‘tetraphyllidean’ cestodes. That work led to the discovery of three new species off Australia and Taiwan. Ambitalveolus gen. n. was erected to accommodate these species. Ambitalveolus costelloae gen. n. et sp. n., Ambitalveolus kempi sp. n., and Ambitalveolus penghuensis sp. n. differ from one another in scolex size, genital pore position, and number of marginal loculi, proglottids, and testes. Among ‘tetraphyllideans’, …
Genomic Approaches To Uncovering The Coevolutionary History Of Parasitic Lice [Review], Kevin P. Johnson
Genomic Approaches To Uncovering The Coevolutionary History Of Parasitic Lice [Review], Kevin P. Johnson
Harold W. Manter Laboratory of Parasitology: Library Materials
Next-generation sequencing technologies are revolutionizing the fields of genomics, phylogenetics, and population genetics. These new genomic approaches have been extensively applied to a major group of parasites, the lice (Insecta: Phthiraptera) of birds and mammals. Two louse genomes have been assembled and annotated to date, and these have opened up new resources for the study of louse biology. Whole genome sequencing has been used to assemble large phylogenomic datasets for lice, incorporating sequences of thousands of genes. These datasets have provided highly supported trees at all taxonomic levels, ranging from relationships among the major groups of lice to those among …
Genetic Characterisation Of Echinocephalus Spp. (Nematoda: Gnathostomatidae) From Marine Hosts In Australia, Christina Karagiorgis, Richard J. Ploeg, Abdul Ghafar, Charles G. Gauci, Tanapan Sukee, Scott C. Cutmore, Jorja Claybrook, Neil R. Loneragan, Nicholas Q-X. Wee, Amber K. Gillett, Ian Beveridge, Abdul Jabbar
Genetic Characterisation Of Echinocephalus Spp. (Nematoda: Gnathostomatidae) From Marine Hosts In Australia, Christina Karagiorgis, Richard J. Ploeg, Abdul Ghafar, Charles G. Gauci, Tanapan Sukee, Scott C. Cutmore, Jorja Claybrook, Neil R. Loneragan, Nicholas Q-X. Wee, Amber K. Gillett, Ian Beveridge, Abdul Jabbar
Harold W. Manter Laboratory of Parasitology: Library Materials
We genetically characterised larval and adult specimens of species of Echinocephalus Molin, 1858 (Gnathostomatidae) collected from various hosts found within Australian waters. Adult specimens of Echinocephalus were collected from a dasyatid stingray [Pastinachus ater (Macleay); n = 2] from Moreton Bay, Queensland and larvae from a hydrophiine sea snake [Hydrophis peronii (Dum´eril); n = 3] from Cape York Peninsula, Queensland, from an octopus (Octopus djinda Amor & Hart; n = 3) from Fremantle, Western Australia and from a lucinid bivalve [Codakia paytenorum (Iredale); n = 5] from Heron Island, Queensland Australia. All nematode samples were identified …
The Molecular Basis For Natural Competence In Acinetobacter, Yafan Yu
The Molecular Basis For Natural Competence In Acinetobacter, Yafan Yu
Department of Food Science and Technology: Dissertations, Theses, and Student Research
Bacteria use Horizontal Gene Transfer (HGT) to acquire genetic material, leading to the development of novel traits, such as the spread and development of antibiotic resistance. Natural competence is one type of HGT accomplished by DNA uptake from the environment and incorporation into the genome. Bacteria from Acinetobacter are wildly distributed in the environment and are naturally competent. This propensity is a key factor to the steady increase in drug resistance in Acinetobacter, which is a cause for concern in human health as Acinetobacter is a major source of nosocomial infections. During natural competence, type IV pili (T4P) and related …
Towards A More Comprehensive Understanding Of Wild Pig (Sus Scrofa) Impacts On Agricultural Producers: Insights From A Texas Case Study, Keith M. Carlisle, Nicole Didero, Sophie Mckee, Julie Elser, Stephanie A. Shwiff
Towards A More Comprehensive Understanding Of Wild Pig (Sus Scrofa) Impacts On Agricultural Producers: Insights From A Texas Case Study, Keith M. Carlisle, Nicole Didero, Sophie Mckee, Julie Elser, Stephanie A. Shwiff
United States Department of Agriculture Wildlife Services: Staff Publications
This research investigates the impacts of invasive wild pigs (Sus scrofa Linneaus) on agricultural producers in Texas, with the aim of identifying and describing all categories of wild pig impacts and quantifying the extent of producers’ over- or underestimation of their total wild pig-related costs in 2018, as compared to calculations based upon data subsequently provided by the producers about individual wild pig-related costs and losses. Based on interviews with 23 producers in 16 Texas counties, we identified more than 20 discrete categories of negative impacts and negligible positive impacts associated with wild pigs. Among them were categories that have …
Bssm: Bayesian Inference Of Non-Linear And Non-Gaussian State Space Models In R, Jouni Helske, Matti Vihola
Bssm: Bayesian Inference Of Non-Linear And Non-Gaussian State Space Models In R, Jouni Helske, Matti Vihola
The R Journal
We present an R package bssm for Bayesian non-linear/non-Gaussian state space modeling. Unlike the existing packages, bssm allows for easy-to-use approximate inference based on Gaussian approximations such as the Laplace approximation and the extended Kalman filter. The package also accommodates discretely observed latent diffusion processes. The inference is based on fully automatic, adaptive Markov chain Monte Carlo (MCMC) on the hyperparameters, with optional importance sampling post-correction to eliminate any approximation bias. The package also implements a direct pseudo-marginal MCMC and a delayed acceptance pseudo-marginal MCMC using intermediate approximations. The package offers an easy-to-use interface to define models with linear-Gaussian state …
Diproperm: An R Package For The Diproperm Test, Andrew G. Allmon, J.S. Marron, Michael G. Hudgens
Diproperm: An R Package For The Diproperm Test, Andrew G. Allmon, J.S. Marron, Michael G. Hudgens
The R Journal
High-dimensional low sample size (HDLSS) data sets frequently emerge in many biomedical applications. The direction-projection-permutation (DiProPerm) test is a two-sample hypothesis test for comparing two high-dimensional distributions. The DiProPerm test is exact, i.e., the type I error is guaranteed to be controlled at the nominal level for any sample size, and thus is applicable in the HDLSS setting. This paper discusses the key components of the DiProPerm test, introduces the diproperm R package, and demonstrates the package on a real-world data set
Reproductive Success Of Captive-Reared Allegheny Woodrats (Neotoma Magister) Released Into Genetically Depauperate Populations, Miracle M. Davis, Timothy J. Smyser, Scott A. Johnson, Joseph Duchamp, Jeffery L. Larkin, Robert K. Swihart, Jacqueline M. Doyle
Reproductive Success Of Captive-Reared Allegheny Woodrats (Neotoma Magister) Released Into Genetically Depauperate Populations, Miracle M. Davis, Timothy J. Smyser, Scott A. Johnson, Joseph Duchamp, Jeffery L. Larkin, Robert K. Swihart, Jacqueline M. Doyle
United States Department of Agriculture Wildlife Services: Staff Publications
Habitat fragmentation and degradation have led to a proliferation of small and isolated populations that are vulnerable to genetic erosion. Reduction in habitat and concomitant declines in population connectivity can expediate the collapse of species that exist as natural metapopulations. In recent years, Allegheny woodrats (Neotoma magister) have experienced local extirpations and declines in genetic diversity across their range due to disease-related mortality, reduced food availability, and disruption of connectivity among subpopulations. In response, we developed a captive-breeding program to facilitate genetic management of isolated woodrat populations in Indiana. Between 2010 and 2012, 27 captive-reared individuals were released to four …
Charting A New Frontier Integrating Mathematical Modeling In Complex Biological Systems From Molecules To Ecosystems, Katharine A. White, Kira D. Mcentire, Nicole R. Buan, Lecia Robinson, Elisar Barbar
Charting A New Frontier Integrating Mathematical Modeling In Complex Biological Systems From Molecules To Ecosystems, Katharine A. White, Kira D. Mcentire, Nicole R. Buan, Lecia Robinson, Elisar Barbar
Department of Biochemistry: Faculty Publications
Advances in quantitative biology data collection and analysis across scales (molecular, cellular, organismal, and ecological) have transformed how we understand, categorize, and predict complex biological systems. This surge of quantitative data creates an opportunity to apply, develop, and evaluate mathematical models of biological systems and explore novel methods of analysis. Simultaneously, thanks to increased computational power, mathematicians, engineers, and physical scientists have developed sophisticated models of biological systems at different scales. Novel modeling schemes can offer deeper understanding of principles in biology, but there is still a disconnect between modeling and experimental biology that limits our ability to fully realize …