Digital Commons Network^™

High-Frequency Unmanned Aircraft Flights For Crop Canopy Imaging During Diurnal Moisture Stress, Suresh Pradhyun Kashyap

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Previous research has used unmanned aerial vehicle (UAV) technology for calculating CWSI (Crop Water Stress Index) values in the context of irrigation scheduling. Typically, these estimations were taken at one time of day, usually near shortly after solar noon. A significant limitation with these CWSI values is that the UAV thermal imagery captured at this point in time can be affected by various factors like atmospheric air temperature, solar radiation, wind speed, relative humidity, and other micrometeorological disturbances in the air. In order to address these temporal effects, high-frequency UAV flights were conducted over different daylight hours to analyze and …

Enhanced Drought Resistance Of Vegetation Growth In Cities Due To Urban Heat, Co2 Domes And O3 Troughs, Peng Fu, Leiqiu Hu, Elizabeth A. Ainsworth, Xiaonan Tai, Soe W. Myint, Wenfeng Zhan, Bethany J. Blakely, Carl J. Bernacchi

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Sustained increase in atmospheric CO2 is strongly coupled with rising temperature and persistent droughts. While elevated CO2 promotes photosynthesis and growth of vegetation, drier and warmer climate can potentially negate this benefit, complicating the prediction of future terrestrial carbon dynamics. Manipulative studies such as free air CO2 enrichment (FACE) experiments have been useful for studying the joint effect of global change factors on vegetation growth; however, their results do not easily transfer to natural ecosystems partly due to their short-duration nature and limited consideration of climatic gradients and potential confounding factors, such as O3. Urban environments serve as a useful …

Sprinkler Irrigation System Field Checklist, Charles C. Hillyer, R. Troy Peters, Xin Qiao, Derek M. Heeren, Jake Larue, Clarence Prestwich, Sandeep Bhatti

Department of Agricultural and Biological Systems Engineering: Faculty Publications

This recommendation came out of a noted need by the ASABE NRES-241 sprinkler irrigation committee in 2019 committee meeting for a simple checklist to quickly educate new center pivot operators on what to look for to determine if a center pivot is operating at designed performance. This checklist is meant to be simple and user friendly. Simple and clear language was incorporated purposefully. It is intended as a quick guide to new irrigators, or as a reminder to more experienced irrigators as to what to check to ensure efficient and effective center pivot and linear move irrigation system operation for …

Publisher Correction: The Genome Of The Stable Fly, Stomoxys Calcitrans, Reveals Potential Mechanisms Underlying Reproduction, Host Interactions, And Novel Targets For Pest Control (Bmc Biology, (2021), 19, 1, (41), 10.1186/S12915-021-00975-9), Pia U. Olafson, Serap Aksoy, Geoffrey M. Attardo, Greta Buckmeier, Xiaoting Chen, Craig J. Coates, Megan Davis, Justin Dykema, Scott J. Emrich, Markus Friedrich, Christopher J. Holmes, Panagiotis Ioannidis, Evan N. Jansen, Emily C. Jennings, Daniel Lawson, Ellen O. Martinson, Gareth L. Maslen, Richard P. Meisel, Terence D. Murphy, Dana Nayduch, David R. Nelson, Kennan J. Oyen, Tyler J. Raszick, José M.C. Ribeiro, Hugh M. Robertson, Andrew J. Rosendale, Timothy B. Sackton, Perot Saelao, Sonja L. Swiger, Sing Hoi Sze, Aaron M. Tarone, David B. Taylor, Wesley C. Warren, Robert M. Waterhouse, Matthew T. Weirauch, John H. Werren, Richard K. Wilson, Evgeny M. Zdobnov, Joshua B. Benoit

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Following publication of the original article [1], it was reported that the article copyright was incorrect. The correct copyright statement is: © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2021. The original article [1] has been corrected.

Management Of Late Summer Planted Annual Forages For Grazing And The Impacts Of Novel Sweet Bran Plus Products On Performance And Carcass Characteristics Of Beef Finishing Steers, Devin Anthony Jakub

Department of Animal Science: Dissertations, Theses, and Student Research

Two separate grazing studies were conducted to evaluate: 1) the effects of rapeseed inclusion into late summer planted oats on the performance of growing steers during late fall and winter (Exp. 1) and 2) the effects of forage allocation on forage utilization and performance of steers grazing a late summer planted oat-rapeseed mix (Exp. 2). Variation in the corn wet milling process can result in negative effects on animal performance, nonetheless, there remains interest in further exploration and refinement of corn wet milling byproducts to achieve optimal byproduct compositions and cattle performance. Thus, another experiment was conducted to evaluate the …

Utilizing Online Resources To Enhance Distribution Of Competitive Animal Evaluation Knowledge And Benefits, Brooke L. Parrish

Department of Animal Science: Dissertations, Theses, and Student Research

In recent years, the shift toward online education has revealed new challenges for learners to retain information, and for educators to find new and engaging ways to present content. This mixed methods, action research study explores the need and creation of online resources for competitive horse judging through surveys and pilot groups. The study was broken into four cycles. The first was an adult learner analysis survey, distributed through email Listservs and extension social media pages, to aid in answering the research questions: what expert horse judging instructors indicate their students should be learning, and what resources they need. Based …

Feeding A New Corn Milling Coproduct To Lactating Dairy Cattle: Examination Of Whole Animal Energy And Nitrogen Balance, Addison Lee Carroll

Department of Animal Science: Dissertations, Theses, and Student Research

New coproducts are continually developed in the ethanol production industry. With that, the new product originates from the dry milling process which is unlike the traditional process as nitrogenous based particles are concentrated from the residual fiber by sieving post fermentation. Although high protein coproducts have been available since the mid 2000’s. These new products must be evaluated for chemical composition so that they can be accurately described in feed libraries that are used in commercial ration formulation software. While chemical composition provides us an initial and useful description of a feed product, in vivo nitrogen and energy balance studies …

Host Genetics And Phenotype Associations Within The Bovine Rumen Microbiome, Waseem Abbas

Department of Animal Science: Dissertations, Theses, and Student Research

Rumen microbes have a symbiotic relationship with the host where the host provides a suitable environment and microbial fermentation fulfill nearly 70% of the energy needs of the host. Rumen microbes play a central role in host performance and health. To date, most rumen microbiome studies have focused on the influence of diet on microbial species composition. In addition to dietary factors, studies have suggested that host genetic markers could influence the colonization of gastrointestinal microbiota. However, our understanding of the host-microbiome interaction and how host phenotype is influenced by the rumen microbiome is limited. This dissertation demonstrates: (1) host …

Complete Modeling Of The Chondrogenic Environment Under Continuous Low-Intensity Ultrasound, Heather Newell

Department of Chemical and Biomolecular Engineering: Dissertations, Theses, and Student Research

Articular cartilage is an avascular tissue that requires therapeutic intervention methods. This work answers the following: determine transducer operation to optimize the bioeffects; calculate the magnitude of pressure exerted on chondrocytes at an injury site; and confirm the theoretical findings by an animal model.

Earlier work has shown that cellular response to US is maximized at the resonance frequency of the cells. Resonance frequencies were calculated for chondrocytes in various layers. The latter configuration closest resembles in vivo conditions and the resonance occurred at 3.8±0.3 ������. The 3D model of US propagation in a rabbit knee was constructed from MRIs …

Visual Diagnostics For Constrained Optimisation With Application To Guided Tours, H Sherry Zhang, Dianne Cook, Ursula Laa, Nicolas Langrené, Patricia Menéndez

The R Journal

A guided tour helps to visualise high-dimensional data by showing low-dimensional projections along a projection pursuit optimisation path. Projection pursuit is a generalisation of principal component analysis in the sense that different indexes are used to define the interestingness of the projected data. While much work has been done in developing new indexes in the literature, less has been done on understanding the optimisation. Index functions can be noisy, might have multiple local maxima as well as an optimal maximum, and are constrained to generate orthonormal projection frames, which complicates the optimization. In addition, projection pursuit is primarily used for …

Bssm: Bayesian Inference Of Non-Linear And Non-Gaussian State Space Models In R, Jouni Helske, Matti Vihola

The R Journal

We present an R package bssm for Bayesian non-linear/non-Gaussian state space modeling. Unlike the existing packages, bssm allows for easy-to-use approximate inference based on Gaussian approximations such as the Laplace approximation and the extended Kalman filter. The package also accommodates discretely observed latent diffusion processes. The inference is based on fully automatic, adaptive Markov chain Monte Carlo (MCMC) on the hyperparameters, with optional importance sampling post-correction to eliminate any approximation bias. The package also implements a direct pseudo-marginal MCMC and a delayed acceptance pseudo-marginal MCMC using intermediate approximations. The package offers an easy-to-use interface to define models with linear-Gaussian state …

Passed: Calculate Power And Sample Size For Two Sample Tests, Jinpu Li, Ryan .. Knigge, Kaiyi Chen, Emily V. Leary

The R Journal

Power and sample size estimation are critical aspects of study design to demonstrate minimized risk for subjects and justify the allocation of time, money, and other resources. Researchers often work with response variables that take the form of various distributions. Here, we present an R package, PASSED, that allows flexibility with seven common distributions and multiple options to accommodate sample size or power analysis. The relevant statistical theory, calculations, and examples for each distribution using PASSED are discussed in this paper.

Automatic Time Series Forecasting With Ata Method In R: Ataforecasting Package, Ali Sabri Taylan, Güçkan Yapar, Hanife Taylan Selamlar

The R Journal

Ata method is a new univariate time series forecasting method that provides innovative solutions to issues faced during the initialization and optimization stages of existing methods. The Ata method’s forecasting performance is superior to existing methods in terms of easy implementation and accurate forecasting. It can be applied to non-seasonal or deseasonalized time series, where the deseasonalization can be performed via any preferred decomposition method. The R package ATAforecasting was developed as a comprehensive toolkit for automatic time series forecasting. It focuses on modeling all types of time series components with any preferred Ata methods and handling seasonality patterns by …

Drhotnet: An R Package For Detecting Differential Risk Hotspots On A Linear Network, Álvaro Briz-Redón, Francisco Martínez-Ruiz, Francisco Montes

The R Journal

One of the most common applications of spatial data analysis is detecting zones, at a certain scale, where a point-referenced event under study is especially concentrated. The detection of such zones, which are usually referred to as hotspots, is essential in certain fields such as criminology, epidemiology, or traffic safety. Traditionally, hotspot detection procedures have been developed over areal units of analysis. Although working at this spatial scale can be suitable enough for many research or practical purposes, detecting hotspots at a more accurate level (for instance, at the road segment level) may be more convenient sometimes. Furthermore, it is …

Maint.Data: Modelling And Analysing Interval Data In R, A Pedro Duarte Silva, Paula Brito, Peter Filzmoser, José G. Dias

The R Journal

We present the CRAN R package MAINT.Data for the modelling and analysis of multivariate interval data, i.e., where units are described by variables whose values are intervals of R, representing intrinsic variability. Parametric inference methodologies based on probabilistic models for interval variables have been developed, where each interval is represented by its midpoint and log-range, for which multivariate Normal and Skew-Normal distributions are assumed. The intrinsic nature of the interval variables leads to special structures of the variance-covariance matrix, which are represented by four different possible configurations. MAINT.Data implements the proposed methodologies in the S4 object system, introducing a …

Matchthem: Matching And Weighting After Multiple Imputation, Farhad Pishgar, Noah Greifer, Clémence Leyrat, Elizabeth Stuart

The R Journal

Balancing the distributions of the confounders across the exposure levels in an observational study through matching or weighting is an accepted method to control for confounding due to these variables when estimating the association between an exposure and outcome and reducing the degree of dependence on certain modeling assumptions. Despite the increasing popularity in practice, these procedures cannot be immediately applied to datasets with missing values. Multiple imputation of the missing data is a popular approach to account for missing values while preserving the number of units in the dataset and accounting for the uncertainty in the missing values. However, …

Bayessenmc: An R Package For Bayesian Sensitivity Analysis Of Misclassification, Jinhui Yang, Lifeng Lin, Haitao Chu

The R Journal

In case–control studies, the odds ratio is commonly used to summarize the association between a binary exposure and a dichotomous outcome. However, exposure misclassification frequently appears in case–control studies due to inaccurate data reporting, which can produce bias in measures of association. In this article, we implement a Bayesian sensitivity analysis of misclassification to provide a full posterior inference on the corrected odds ratio under both non-differential and differential misclassification. We present an R (R Core Team, 2018) package BayesSenMC, which provides user-friendly functions for its implementation. The usage is illustrated by a real data analysis on the association between …

Passo: An R Package For Assessing Partial Association Between Ordinal Variables, Shaobo Li, Xiaorui Zhu, Yuejie Chen, Dungang Liu

The R Journal

Partial association, the dependency between variables after adjusting for a set of covariates, is an important statistical notion for scientific research. However, if the variables of interest are ordered categorical data, the development of statistical methods and software for assessing their partial association is limited. Following the framework established by Liu et al. (2021), we develop an R package PAsso for assessing Partial Associations between ordinal variables. The package provides various functions that allow users to perform a wide spectrum of assessments, including quantification, visualization, and hypothesis testing. In this paper, we discuss the implementation of PAsso in …

Estimating Social Influence Effects In Networks Using A Latent Space Adjusted Approach In R, Ran Xu

The R Journal

Social influence effects have been extensively studied in various empirical network research. However, many challenges remain in estimating social influence effects in networks, as influence effects are often entangled with other factors, such as homophily in the selection process and the common social-environmental factors that individuals are embedded in. Methods currently available either do not solve these problems or require stringent assumptions. Recent works by Xu (2018) and others have shown that a latent space adjusted approach based on the latent space model has the potential to disentangle the influence effects from other processes, and the simulation evidence has shown …

Robo-Ump: A Study Of The Prospective Impact Of Automated Strike Zone Use In Major League Baseball Games From The Perspective Of Broadcasters And Media, Bob Greene

College of Journalism and Mass Communications: Theses

A qualitative analysis of the Major League Baseball industry’s perspective on the use of technology within the game, specifically the incorporation of an automated strike zone in place of traditional umpires, through targeted survey results from current MLB broadcasters and journalists or media members. Evidence from the research suggests that though those who are in favor of umpires being replaced by technology within the game, at least in some fashion, there are concerns that the technology in place is currently ready to provide the type of experience desired for MLB play when it comes ruling on balls and strikes with …

Voltage Controlled Néel Vector Rotation In Zero Magnetic Field, Ather Mahmood, Will Echtenkamp, Mike Street, Jun Lei Wang, Shi Cao, Takashi Komesu, Peter Dowben, Pratyush Buragohain, Haidong Lu, Alexei Gruverman, Arun Parthasarathy, Shaloo Rakheja, Christian Binek

Peter Dowben Publications

Multi-functional thin films of boron (B) doped Cr₂O₃ exhibit voltage-controlled and nonvolatile Néel vector reorientation in the absence of an applied magnetic field, H. Toggling of antiferromagnetic states is demonstrated in prototype device structures at CMOS compatible temperatures between 300 and 400 K. The boundary magnetization associated with the Néel vector orientation serves as state variable which is read via magnetoresistive detection in a Pt Hall bar adjacent to the B:Cr₂O₃ film. Switching of the Hall voltage between zero and non-zero values implies Néel vector rotation by 90 degrees. Combined magnetometry, spin resolved inverse …

Agent Based Modeling Of The Spread Of Social Unrest Based On Infectious Disease Spread Model, Anup Adhikari

School of Computing: Dissertations, Theses, and Student Research

Social unrest activities are the tools for people to show dissatisfaction, and often people are motivated by similar unrest activities in another region. This causes a spread of unrest activities across space and time. In this thesis, we model the spread of social unrest across time and space. The underlying novel methodology is to model the regions as agents that transition from one state to another based on changes in their environment. The methodology involves (1) creating a region vector for each agent based on socio-demographic, cultural, economic, infrastructural, geographic, and environmental (SCEIGE) factors, (2) formulating neighborhood distance function to …

Genome Annotation Using Average Mutual Information, Garin P. Newcomb

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

Advancements in high-throughput DNA sequencing technologies and ambitious goals for their use are resulting in the generation of a deluge of unannotated sequenced genomes. This makes computational tools that can aid in annotation increasingly valuable.

Here, we provide a detailed exploration of the utility as well as the limitations of average mutual information (AMI) in several steps of genome annotation. For a genomic sequence, AMI is a measure of the information a base contains about the base separated by a fixed lag. A profile is constructed by calculating AMI at multiple lags. In addition to traditional AMI, we employ two …

Sex And Nest Type Influence Avian Blood Parasite Prevalence In A High-Elevation Bird Community, Marina D. Rodriguez, Paul F. Doherty, Antoinette J. Piaggio, Kathryn P. Huyvaert

United States Department of Agriculture Wildlife Services: Staff Publications

Background: The prevalence of avian haemosporidian parasites and the factors influencing infection in the Colorado Rocky Mountains are largely unknown. With climate change expected to promote the expansion of vector and avian blood parasite distributions, baseline knowledge and continued monitoring of the prevalence and diversity of these parasites is needed.

Methods: Using an occupancy modeling framework, we conducted a survey of haemosporidian parasite species infecting an avian community in the Colorado Rocky Mountains in order to estimate the prevalence and diversity of blood parasites and to investigate species-level and individual-level characteristics that may influence infection.

Results: We estimated the prevalence …

Novel Peridynamic Models For Material Degradation And Mass Transport, Jiangming Zhao

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Fracture and corrosion are two major causes of structure failure. They can interact with each other, leading to faster material degradation. They are also under the influence of environmental conditions. The corrosion rate highly depends on the transportation rate of involving substances, while the fracture can be accelerated significantly due to fluid flow. These complex mechanisms involved in structure failure have troubled classical models for decades. The peridynamic (PD) theory introduced in 2000 has shown great potential in modeling such problems. In this work, we develop novel PD models for fracture, corrosion, mass transport, and viscous flow, which are building …

How Do Genetic Relatedness And Spatial Proximity Shape African Swine Fever Infections In Wild Boar?, Tomasz Podgórski, Kim M. Pepin, Anna Radko, Angelika Podbielska, Magdalena Łyjak, Grzegorz Woźniakowski, Tomasz Borowik

United States Department of Agriculture Wildlife Services: Staff Publications

The importance of social and spatial structuring of wildlife populations for disease spread, though widely recognized, is still poorly understood in many host-pathogen systems. In particular, system-specific kin relationships among hosts can create contact heterogeneities and differential disease transmission rates. Here, we investigate how distance-dependent infection risk is influenced by genetic relatedness in a novel host-pathogen system: wild boar (Sus scrofa) and African swine fever (ASF).We hypothesized that infection risk would correlate positively with proximity and relatedness to ASF-infected individuals but expected those relationships to weaken with the distance between individuals due to decay in contact rates and …

Design And Evaluation Of Unmanned Aerial System-Based Wireless Sensor Network For Irrigation Management, Jasreman Singh

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Increasing pressure on food production, both in terms of quantity and quality, has called for intensification and modernization of the agricultural sector. The “Internet of Things” (IoT) is a highly promising technology capable of advancing agricultural operations. The IoT-based real-time monitoring of soil water status and crop canopy temperature in maize and soybean could potentially improve irrigation efficiency, leading to the profitability of field crop production and conservation of natural resources. The overall goal of the work presented here is to design, develop, and evaluate the unmanned aerial system-based wireless sensor system (UWSN) for the purpose of irrigation management by …

Behavior Modeling Training, Megan Paul

Umbrella Summaries

What is behavior modeling training?

Behavior modeling training (BMT) involves the following five steps: “(a) describing to trainees a set of well-defined behaviors (skills) to be learned, (b) providing a model or models displaying the effective use of those behaviors, (c) providing opportunities for trainees to practice using those behaviors, (d) providing feedback and social reinforcement to trainees following practice, and (e) taking steps to maximize the transfer of those behaviors to the job” (Taylor et al., 2005, p. 692). BMT can be used to train a variety of skills, from interpersonal skills like conflict management, interviewing, assertive communication, and …

Multilayer Lateral Heterostructures Of Van Der Waals Crystals With Sharp, Carrier–Transparent Interfaces, Eli A. Sutter, Raymond R. Unocic, Juan-Carlos Idrobo, Peter Sutter

Department of Electrical and Computer Engineering: Faculty Publications

Research on engineered materials that integrate different 2D crystals has largely focused on two prototypical heterostructures: Vertical van der Waals stacks and lateral heterostructures of covalently stitched monolayers. Extending lateral integration to few layer or even multilayer van der Waals crystals could enable architectures that combine the superior light absorption and photonic properties of thicker crystals with close proximity to interfaces and efficient carrier separation within the layers, potentially benefiting applications such as photovoltaics. Here, the realization of multilayer heterstructures of the van der Waals semiconductors SnS and GeS with lateral interfaces spanning up to several hundred individual layers is …

Daily Phonatory Activity Of Individuals With Parkinson’S Disease, Jeff Searl, Angela M. Dietsch

Department of Special Education and Communication Disorders: Faculty Publications

Purpose

This study evaluated the amount of phonatory activity of Persons with Parkinson disease (PwPD) compared to adults without Parkinson’s disease measured over 3 days. The relationship between the amount of phonatory activity and Voice Handicap Index (VHI) total score was assessed as were differences in voicing activity across 3 days of data collection.

Methods

Fifteen PwPD receiving dopaminergic medication and fifteen age and sex matched adults without Parkinson’s disease completed the VHI and then wore a VocaLog vocal monitor (VM) for 3 consecutive days. From the VM data, the number of 1-second windows with dB sound pressure level > 0 …