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Variation In Morpho‑Physiological And Metabolic Responses To Low Nitrogen Stress Across The Sorghum Association Panel, Marcin Grzybowski, Mackenzie Zwiener, Mackenzie Zwiener, Hongyu Jin, Nuwan K. Wijewardane, Abbas Atefi, Michael J. Naldrett, Sophie Alvarez, Yufeng Ge, James C. Schnable

Center for Plant Science Innovation: Faculty Publications

Background: Access to biologically available nitrogen is a key constraint on plant growth in both natural and agricultural settings. Variation in tolerance to nitrogen deficit stress and productivity in nitrogen limited conditions exists both within and between plant species. However, our understanding of changes in different phenotypes under long term low nitrogen stress and their impact on important agronomic traits, such as yield, is still limited.

Results: Here we quantified variation in the metabolic, physiological, and morphological responses of a sorghum association panel assembled to represent global genetic diversity to long term, nitrogen deficit stress and the relationship …

Can Body Mass Index Influence The Skin Temperature Of Adolescents? A Preliminary Study With The Use Of Infrared Thermography, Hamilton Henrique Teixeira Reis, Ciro José Brito, Alisson Gomes Da Silva, Manuel Sillero-Quintana, Victória Esther Teixeria Reis, Francisco Zacaron Werneck, Ismael Fernández-Cuevas, Matheus Santos Cerqueira, João Carlos Bouzas Marins

Department of Nutrition and Health Sciences: Faculty Publications

– Infrared thermography (IRT) has been used to assess skin temperature (Tsk), especially during the COVID-19 pandemic, as an important tool in medical screening not only of the general population, but also of young athletes. However, the subcutaneous adipose tissue can act as an insulator when the Tsk is assessed by IRT, modifying the normal Tsk data and leading to their misinterpretation. Considering that the body mass index (BMI) is an important predictor of obesity, the objective of this study was to verify if the Tsk measured by IRT is affected by the BMI in adolescents. A preliminary study was …

Pitfalls And Guidelines For Using Time-Based Git Data, Samuel W. Flint, Jigyasa Chauhan, Robert Dyer

School of Computing: Faculty Publications

Many software engineering research papers rely on time-based data (e.g., commit timestamps, issue report creation/update/close dates, release dates). Like most real-world data however, time-based data is often dirty. To date, there are no studies that quantify how frequently such data is used by the software engineering research community, or investigate sources of and quantify how often such data is dirty. Depending on the research task and method used, including such dirty data could aect the research results. This paper presents an extended survey of papers that utilize time-based data, published in the Mining Software Repositories (MSR) conference series. Out of …

Decipherment Challenges Due To Tamga And Letter Mix-Ups In An Old Hungarian Runic Inscription From The Altai Mountains, Peter Revesz

School of Computing: Faculty Publications

An Old Hungarian Runic inscription from the Altai Mountains with 40 signs has posed some special challenges for decipherment due to several letter mix-ups and the use of a tamga sign, which is the first reported use of a tamga within this type of script. This paper gives a complete and correct translation and draws some lessons that can be learned about decipherment. It introduces sign similarity matrices as a method of detecting accidental misspellings and shows that sign similarity matrices can be efficiently computed. It also explains the importance of simultaneously achieving the three criteria for a valid decipherment: …

Electron And Positron Scattering Cross Sections From Co2: A Comparative Study Over A Broad Energy Range (0.1−5000 Ev), Ana I. Lozano, Adrián García-Abenza, Francisco Blanco Ramos, Mahmudul Hasan, Daniel S. Slaughter, Thorsten Weber, Robert P. Mceachran, Ronald D. White, Michael J. Brunger, Paulo LimãO-Vieira, Gustavo García Gómez-Tejedor

Department of Physics and Astronomy: Faculty Publications

In this Review, we present a comparative study between electron and positron scattering cross sections from CO₂ molecules over a broad impact energy range (0.1−5000 eV). For electron scattering, new total electron scattering cross sections (e-TCS) have been measured with a high resolution magnetically confined electron beam transmission system from 1 to 200 eV. Dissociative electron attachment processes for electron energies from 3 to 52 eV have been analyzed by measuring the relative O⁻anion production yield. In addition, elastic, inelastic, and total scattering cross section calculations have been carried out in the framework of the Independent Atom …

Co-Transcriptomic Analysis Of The Maize–Western Corn Rootworm Interaction, Lise Pingault, Saumik Basu, Neetha N. Vellichirammal, William Paul Williams, Gautam Sarath, Joe Louis

Department of Entomology: Faculty Publications

The Western corn rootworm (WCR; Diabrotica virgifera virgifera) is an economically important belowground pest of maize. Belowground feeding by WCR is damaging because it weakens the roots system, diminishes nutrient uptake, and creates entry points for fungal and bacterial pathogens and increases lodging, all of which can significantly suppress maize yields. Previously, it was demonstrated that belowground herbivory can trigger plant defense responses in the roots and the shoots, thereby impacting intraplant communication. Although several aspects of maize-WCR interactions have been reported, co-transcriptomic remodeling in the plant and insect are yet to be explored. We used a maize genotype, …

Leptogenesis Triggered By A First-Order Phase Transition, Peisi Huang, Ke-Pan Xie

Department of Physics and Astronomy: Faculty Publications

We propose a new scenario of leptogenesis, which is triggered by a first-order phase transition (FOPT). The right-handed neutrinos (RHNs) are massless in the old vacuum, while they acquire a mass in the new vacuum bubbles, and the mass gap is huge compared with the FOPT temperature. The ultra-relativistic bubble walls sweep the RHNs into the bubbles, where the RHNs experience fast decay and generate the lepton asymmetry, which is further converted to the baryon asymmetry of the Universe (BAU). Since the RHNs are out of equilibrium inside the bubble, the generated BAU does not suffer from the thermal bath …

Students’ Self-Efficacy In Self-Regulation Together With Behavioural And Emotional Strengths: Investigating Their Self-Perceptions, Minna Ikävalko, Erkko Sointu, Matthew C. Lambert, Jaana Viljaranta

Department of Special Education and Communication Disorders: Faculty Publications

Students’ self-perceptions are a foundation for educational and psychosocial development. In order to investigate self-perceptions, we need to recognise the preconceptions (e.g. doubts and confidence) students hold about themselves. In this study, we examined 10–16-year-old students’ (N=599) self–perceptions from the viewpoints of the sources of self-efficacy in self-regulation and behavioural and emotional strengths. Specifically, we used descriptive analyses to examine whether students’ ages or received pedagogical support played a role in how they perceived themselves, and whether these viewpoints are related to each other. Our results indicate that, in general, primary school students perceived their sources of self-efficacy in self-regulation …

Using Sentinel-2 Imagery And Machine Learning Algorithms To Assess The Inundation Status Of Nebraska Conservation Easements During 2018–2021, Ligang Zhang, University Of Nebraska-Lincoln, Zhenghong Tang

School of Natural Resources: Faculty Publications

Conservation easements (CEs) play an important role in the provision of ecological services. This paper aims to use the open-access Sentinel-2 satellites to advance existing conservation management capacity to a new level of near-real-time monitoring and assessment for the conservation easements in Nebraska. This research uses machine learning and Google Earth Engine to classify inundation status using Sentinel-2 imagery during 2018–2021 for all CE sites in Nebraska, USA. The proposed machine learning approach helps monitor the CE sites at the landscape scale in an efficient and low-cost manner. The results confirmed effective inundation performance in these floodplain or wetland-related CE …

Parasol: Efficient Parallel Synthesis Of Large Model Spaces, Clay Stevens, Hamid Bagheri

School of Computing: Conference and Workshop Papers

Formal analysis is an invaluable tool for software engineers, yet state-of-the-art formal analysis techniques suffer from well-known limitations in terms of scalability. In particular, some software design domains—such as tradeoff analysis and security analysis—require systematic exploration of potentially huge model spaces, which further exacerbates the problem. Despite this present and urgent challenge, few techniques exist to support the systematic exploration of large model spaces. This paper introduces Parasol, an approach and accompanying tool suite, to improve the scalability of large-scale formal model space exploration. Parasol presents a novel parallel model space synthesis approach, backed with unsupervised learning to automatically derive …

Prebiotics Enhance Persistence Of Fermented-Food Associated Bacteria In In Vitro Cultivated Fecal Microbial Communities, Chloe M. Christensen, Car Reen Kok, Jennifer Auchtung, Robert Hutkins

Department of Food Science and Technology: Faculty Publications

It is well established that the gastrointestinal (GI) microbiota plays a major role in human health. Dietary interventions, and consumption of fermented foods that contain live microbes, in particular, are among the approaches being investigated to modulate the GI microbiota and improve health. However, the persistence of fermented food-associated bacteria (FAB) within the GI tract is typically limited by host factors that limit colonization and competition with autochthonous microbes. In this research, we examined if the addition of prebiotics, dietary substrates that are selectively metabolized by microbes to improve health, would enhance the persistence of FAB. We evaluated the persistence …

Estimating The Burden Of Heat-Related Illness Morbidity Attributable To Anthropogenic Climate Change In North Carolina, Jagadeesh Puvvula, Azar M. Abadi, Kathryn C. Conlon, Jared J. Rennie, Stephanie C. Herring, Laurie Thie, Max J. Rudolph, Rebecca Owen, Jesse E. Bell

School of Natural Resources: Faculty Publications

Climate change is known to increase the frequency and intensity of hot days (daily maximum temperature ≥30°C), both globally and locally. Exposure to extreme heat is associated with numerous adverse human health outcomes. This study estimated the burden of heat-related illness (HRI) attributable to anthropogenic climate change in North Carolina physiographic divisions (Coastal and Piedmont) during the summer months from 2011 to 2016. Additionally, assuming intermediate and high greenhouse gas emission scenarios, future HRI morbidity burden attributable to climate change was estimated. The association between daily maximum temperature and the rate of HRI was evaluated using the Generalized Additive Model. …

Permafrost Landscape History Shapes Fluvial Chemistry, Ecosystem Carbon Balance, And Potential Trajectories Of Future Change, Scott Zolkos, Suzanne E. Tank, Steven V. Kokelj, Robert G. Striegl, Sarah Shakil, Carolina Voigt, Oliver Sonnentag, William L. Quinton, Edward A.G. Schuur, Donatella Zona, Peter M. Lafleur, Ryan C. Sullivan, Masahito Ueyama, David Billesbach, David Cook, Elyn R. Humphreys, Philip Marsh

Daugherty Water for Food Global Institute: Faculty Publications

Intensifying permafrost thaw alters carbon cycling by mobilizing large amounts of terrestrial substrate into aquatic ecosystems. Yet, few studies have measured aquatic carbon fluxes and constrained drivers of ecosystem carbon balance across heterogeneous Arctic landscapes. Here, we characterized hydrochemical and landscape controls on fluvial carbon cycling, quantified fluvial carbon fluxes, and estimated fluvial contributions to ecosystem carbon balance across 33 watersheds in four ecoregions in the continuous permafrost zone of the western Canadian Arctic: unglaciated uplands, ice-rich moraine, and organic-rich lowlands and till plains. Major ions, stable isotopes, and carbon speciation and fluxes revealed patterns in carbon cycling across ecoregions …

Combining Phenotypic And Genomic Data To Improve Prediction Of Binary Traits, Diego Jarquin, Arkaprava Roy, Bertrand S. Clarke, Subhashis Ghosal

Department of Statistics: Faculty Publications

Plant breeders want to develop cultivars that outperform existing genotypes. Some characteristics (here ‘main traits’) of these cultivars are categorical and difficult to measure directly. It is important to predict the main trait of newly developed genotypes accurately. In addition to marker data, breeding programs often have information on secondary traits (or ‘phenotypes’) that are easy to measure. Our goal is to improve prediction of main traits with interpretable relations by combining the two data types using variable selection techniques. However, the genomic characteristics can overwhelm the set of secondary traits, so a standard technique may fail to select any …

Summer Field Report, June-July 2022, W. Ross Silcock

Nebraska Bird Review

As always, the summer season produces surprises, and this year was no exception. Surprises fall into different categories, though: genuine statewide rarities, within-state distributional rarities, and, of course in summer, nesting records at new locations, population notes, late and early dates and high numbers, increased knowledge about subspecies in the state, and miscellaneous things of interest. These categories are covered separately below after some housekeeping comments.

“Genuine statewide rarities” were led by the first state record Limpkin found by Karen Kader and seen by many in Sarpy Co. Potential 2nd or so state records were a Mexican Duck in Scotts …

2021 (33rd) Report Of The Nou Records Committee, Mark A. Brogie

Nebraska Bird Review

The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website www.NOUbirds.org. Starting in 2020, the NOURC decided to deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska”. Casual species and out-of- range species are now summarized in the “Seasonal Reports” of the …

The Nebraska Bird Review. Volume 90 September 2022 Number 3

Nebraska Bird Review

Summer Field Report, June - July 2022 by W. Ross Silcock ….90

2021 (33rd) Report of the NOU Records Committee by Mark A. Brogie … 113

Subscription and Organization Information … 123

A Discourse, Delivered At Plymouth, December 22, 1820. In Commemoration Of The First Settlement Of New-England (1821), Daniel Webster, Paul Royster , Ed.

Zea E-Books in American Studies

To celebrate the 200th anniversary of the Mayflower Pilgrims’ Landing at Plymouth Rock, Daniel Webster (1782–1852), former congressman and future senator and secretary of state, delivered this long discourse to the assembled members of the Pilgrim Society. Always the consummate New Englander, Webster sketched 200 years of American history, surveyed the present era, and projected grand future prospects for a nation barely 40 years old, but with deep roots in Reformed Protestant values and English constitutionalism. Underlying all was his belief that “The character of their political institutions was determined by the fundamental laws respecting property.” Webster’s stories highlight the …

Polyploidy Events Shaped The Expansion Of Transcription Factors In Cucurbitaceae And Exploitation Of Genes For Tendril Development, Yu Zhang, Yingchao Zhang, Bing Li, Xiao Tan, Changping Zhu, Tong Wu, Shuyan Feng, Qihang Yang, Shaoqin Shen, Tong Yu, Zhuo Liu, Xiaoming Song

Department of Food Science and Technology: Faculty Publications

Cucurbitaceae is one of the most important plant families distributed worldwide. Transcription factors (TFs) regulate plant growth at the transcription level. Here, we performed a systematic analysis of 42 641 TFs from 63 families in 14 Cucurbitaceae and 10 non-cucurbit species. Whole-genome duplication (WGD) was the dominant event type in almost all Cucurbitaceae plants. The TF families were divided into 1 210 orthogroups (OGs), of which, 112 were unique to Cucurbitaceae. Although the loss of several gene families was detected in Cucurbitaceae, the gene families expanded in five species that experienced a WGD event comparing with grape. Our findings revealed …

Project-Based Learning Promotes Students’Perceived Relevance In An Engineering Statistics Course: A Comparison Of Learning In Synchronous And Online Learning Environments, Wen Huang, Jeremi S. London, Loga A. Perry

Department of Civil and Environmental Engineering: Faculty Publications

Understanding statistics is essential for engineers. However, statistics courses remain challenging for many students, as they find them rigid, abstract, and demanding. Prior research has indicated that using project based learning (PjBL) to demonstrate the relevance of statistics to students can have a significant effect on learning in these courses. Consequently, this study sought to explore the impact of a PjBL intervention on student perceptions of the relevance of engineering and statistics. The purpose of the intervention was to help students understand the connection between statistics and their academic majors, lives, and future careers. Four mini-projects connecting statistics to students’ …

Using Electrochemical Oxidation To Remove Pfas In Simulated Investigation-Derivedwaste (Idw): Laboratory And Pilot-Scale Experiments, Amy Yanagida, Elise Webb, Clifford E. Harris, Mark Christenson, Steven Comfort

School of Natural Resources: Faculty Publications

Repeated use of aqueous firefighting foams at military aircraft training centers has contaminated groundwater with per and polyfluorinated alkyl substances (PFAS). To delineate the extent of PFAS contamination, numerous site investigations have occurred, which have generated large quantities of investigation-derived wastes (IDW). The commonly used treatment of incinerating PFAS-tainted IDW is costly, and was recently suspended by the Department of Defense. Given long-term IDW storage in warehouses is not sustainable, our objective was to use electrochemical oxidation to degrade PFAS in contaminated water and then scale the technology toward IDW treatment. This was accomplished by conducting a series of laboratory …

Characteristics Of Emotional Disturbance Of Female And Male Students In Elementary, Middle, And High School, Douglas Cullinan, Matthew C. Lambert, Michael Epstein

Department of Special Education and Communication Disorders: Faculty Publications

Provide data on the five characteristics of emotional disturbance (ED). For 503 students with ED and 2016 without disabilities, teachers rated the characteristics (Inability to Learn; Relationship Problems; Inappropriate Behavior; Unhappiness or Depression; Physical Symptoms or Fears), plus Socially Maladjusted. We applied a 2 (ED, without disabilities) × 2 (female, male) × 3 (elementary, middle, high school) covariance analysis, with follow‐up comparisons. Students with ED showed greater problems than students without disabilities on all five characteristics, and Socially Maladjusted. On Inability to Learn, among students with ED genders did not differ at elementary but males …

Ai Protein Structure Prediction-Based Modeling And Mutagenesis Of A Protostome Receptor And Peptide Ligands Reveal Key Residues For Their Interaction, Shi-Qi Guo, Ya-Dong Li, Ping Chen, Guo Zhang, Hui-Ying Wang, Hui-Min Jiang, Wei-Jia Liu, Ju-Ping Xu, Xue-Ying Ding, Ping Fu, Ke Yu, Hai-Bo Zhou, James W. Checco, Jian Jing

Department of Chemistry: Faculty Publications

The protostome leucokinin (LK) signaling system, including LK peptides and their G protein-coupled receptors, has been characterized in several species. Despite the progress, molecular mechanisms governing LK peptide–receptor interactions remain to be elucidated. Previously, we identified a precursor protein for Aplysia leucokinin-like peptides (ALKs) that contains the greatest number of amidated peptides among LK precursors in all species identified so far. Here, we identified the first ALK receptor from Aplysia, ALKR. We used cell-based IP1 activation assays to demonstrate that two ALK peptides with the most copies, ALK1 and ALK2, activated ALKR with high potencies. Other endogenous ALK-derived peptides …

Communicating Across Eternal Divides: Conceptualizing Communicated Acceptance During Parent-Child Religious Difference, Toni Morgan, Jody Koenig Kellas

Department of Communication Studies: Faculty Publications

Significant religious difference in the family has become increasingly prevalent in recent years. While religious difference may be challenging for families to negotiate, the manner in which family members communicate about it seems to be helpful in promoting positive interactions between parents and children. The purpose of this study was to conceptualize a parental communicated (non) acceptance continuum in the context of significant parent-child religious difference. We conducted semi-structured interviews with 44 adults who identified a significant religious difference with their parent. The results suggested that communicated (non)acceptance occurred along a continuum with four ranges of behaviors: communicated nonacceptance, ambivalence, …

Host Species And Captivity Distinguish The Microbiome Compositions Of A Diverse Zoo-Resident Non-Human Primate Population, Maya O. Wills, Robin R. Shields-Cutler, Emily Brunmeier, Madison Weissenborn, Tami Murphy, Dan Knights, Timothy J. Johnson, Jonathan B. Clayton

Department of Food Science and Technology: Faculty Publications

Vast numbers of microorganisms inhabit the mammalian gastrointestinal tract in a complex community referred to as the gut microbiome. An individual’s microbiome may be impacted by genetics, diet, and various environmental factors, and has been associated with many health states and diseases, though specific explanations are lacking. While these communities are well-studied in human populations, non-human primates (NHPs), in particular zoo-resident or captive NHPs, offer distinct advantages to increasing our understanding of factors that influence gut microbiome composition. Here, we characterize the gut microbiome composition of a phylogenetically diverse cohort of NHPs residing in the same urban zoo. We show …

Herbaceous Production Lost To Tree Encroachment In United States Rangelands, Scott L. Morford, Brady W. Allred, Dirac L. Twidwell Jr, Matthew O. Jones, Jeremy D. Maestas, Caleb P. Roberts, David E. Naugle

Department of Agronomy and Horticulture: Faculty Publications

1. Rangelands of the United States provide ecosystem services that benefit society and rural economies. Native tree encroachment is often overlooked as a primary threat to rangelands due to the slow pace of tree cover expansion and the positive public perception of trees. Still, tree encroachment fragments these landscapes and reduces herbaceous production, thereby threatening habitat quality for grassland wildlife and the economic sustainability of animal agriculture.

2. Recent innovations in satellite remote sensing permit the tracking of tree encroachment and the corresponding impact on herbaceous production. We analysed tree cover change and herbaceous production across the western United States …

Ncoa4 Regulates Iron Recycling And Responds To Hepcidin Activity And Lipopolysaccharide In Macrophages, Cole A. Guggisberg, Juyoung Kim, Jaekwon Lee, Xiaoli Chen, Moon-Suhn Ryu

Department of Biochemistry: Faculty Publications

Macrophages, via erythrophagocytosis, recycle iron from effete erythrocytes to newly developing red blood cells. Conversion of potentially cytotoxic levels of iron from its heme into nonheme form during iron recycling is safely accomplished via coordinated regulations of cellular iron transport and homeostasis. Herein, we demonstrate the roles and regulation of NCOA4 (nuclear receptor coactivator 4)-mediated ferritinophagy in macrophages after erythrophagocytosis using the mouse macrophage cell line J774 cells. Ferritin in J774 cells increased with the rise of nonheme iron by erythrocyte ingestion and declined when total cellular iron contents subsequently decreased. NCOA4, a selective autophagic cargo receptor for ferritin, was …

The Referential Abbreviations Used By Linnaeus And Other Authors From 1758 Through 1779 For Describing Species Of Scarabaeoidea (Insecta: Coleoptera), Auke J. Hielkema

Insecta Mundi

A list of abbreviations regarding literature, collections and persons as used by early authors (1758–1779) of scarabaeoid beetles (Insecta: Coleoptera) is given together with modern referrals to the Literature Cited. Notes regarding referential errors are included. Hyperlinks to all mentioned and freely online available publications are provided.

Collateral Damage From Agricultural Netting To Open-Country Bird Populations In Thailand, Rongrong Angkaew, Philip D. Round, Dusit Ngoprasert, Larkin A. Powell

School of Natural Resources: Faculty Publications

Nets are used across a wide variety of food production landscapes to control avian pests typically resulting in deaths of entangled birds. However, the impact of nets on bird populations is a human–wildlife conflict that remains mostly unquantified. Here, we examined the scale of netting in the central plains of Thailand, a region dominated by ricefields, among which aquaculture ponds are increasingly interspersed. Nets/exclusion types, number of individual birds and species caught were recorded on 1312 road-survey transects (2-km length × 0.4-km width). We also interviewed 104 local farmers. The transect sampling took place in late- September 2020, and from …

From Free-Energy Profiles To Activation Free Energies, Johannes C. Dietschreit, Dennis J. Diestler, Andreas Hulm, Christian Ochsenfeld, Rafael Gómez-Bombarelli

Department of Agronomy and Horticulture: Faculty Publications

Given a chemical reaction going from reactant (R) to the product (P) on a potential energy surface (PES) and a collective variable (CV) discriminating between R and P, we define the free-energy profile (FEP) as the logarithm of the marginal Boltzmann distribution of the CV. This FEP is not a true free energy. Nevertheless, it is common to treat the FEP as the “free-energy” analog of the minimum potential energy path and to take the activation free energy, ΔF‡ _RP, as the difference between the maximum at the transition state and the minimum at R. We show that this …