Digital Commons Network^™

Differentiating Between Urban Flood Risk As A Unitary Problem And As A Strand In A Braided Problem Set: Implications For Administrative Coordination, Sarah Michaels

Department of Political Science: Faculty Publications

Flood protection is a leading priority for urban water sustainability. Making cities more resilient to flooding has become urgent as the climate changes and as cities increasingly become the loci of human population and resources. Reducing the risk of future flooding in cities often necessitates different jurisdictions working together. They may do so because they confront a shared problem. This was the case in the City of Lincoln, Nebraska, USA, when partnering agencies shared a single focus on reducing flood risk from Beal Slough to the Nebraska State Penitentiary. In contrast, entities may band together to confront braided problems, intertwined …

Small Rnas >26 Nt In Length Associate With Ago1 And Are Upregulated By Nutrient Deprivation In The Alga Chlamydomonas, Yingshan Li, Eun-Jeong Kim, Adam Voshall, Etsuko Moriyama, Heriberto D. Cerutti

School of Biological Sciences: Faculty Publications

Small RNAs (sRNAs) associate with ARGONAUTE (AGO) proteins forming effector complexes with key roles in gene regulation and defense responses against molecular parasites. In multicellular eukaryotes, extensive duplication and diversification of RNA interference (RNAi) components have resulted in intricate pathways for epigenetic control of gene expression. The unicellular alga Chlamydomonas reinhardtii also has a complex RNAi machinery, including 3 AGOs and 3 DICER-like proteins. However, little is known about the biogenesis and function of most endogenous sRNAs. We demonstrate here that Chlamydomonas contains uncommonly long (>26 nt) sRNAs that associate preferentially with AGO1. Somewhat reminiscent of animal PIWI-interacting RNAs, …

Federated Learning Framework Integrating Refined Cnn And Deep Regression Forests, Daniel Nolte, Omid Bazgir, Souparno Ghosh, Ranadip Pal

Department of Statistics: Faculty Publications

Predictive learning from medical data incurs additional challenge due to concerns over privacy and security of personal data. Federated learning, intentionally structured to preserve high level of privacy, is emerging to be an attractive way to generate cross-silo predictions in medical scenarios. However, the impact of severe population-level heterogeneity on federated learners is not well explored. In this article, we propose a methodology to detect presence of population heterogeneity in federated settings and propose a solution to handle such heterogeneity by developing a federated version of Deep Regression Forests. Additionally, we demonstrate that the recently conceptualized REpresentation of Features as …

Federated Learning Framework Integrating Refined Cnn And Deep Regression Forests, Daniel Nolte, Omid Bazgir, Souparno Ghosh, Ranadip Pal

Department of Statistics: Faculty Publications

Predictive learning from medical data incurs additional challenge due to concerns over privacy and security of personal data. Federated learning, intentionally structured to preserve high level of privacy, is emerging to be an attractive way to generate cross-silo predictions in medical scenarios. However, the impact of severe population-level heterogeneity on federated learners is not well explored. In this article, we propose a methodology to detect presence of population heterogeneity in federated settings and propose a solution to handle such heterogeneity by developing a federated version of Deep Regression Forests. Additionally, we demonstrate that the recently conceptualized REpresentation of Features as …

Efficient Two-Stage Analysis For Complex Trait Association With Arbitrary Depth Sequencing Data, Zheng Xu, Song Yan, Shuai Yuan, Cong Wu, Sixia Chen, Zifang Guo

School of Computing: Faculty Publications

Sequencing-based genetic association analysis is typically performed by first generating genotype calls from sequence data and then performing association tests on the called genotypes. Standard approaches require accurate genotype calling (GC), which can be achieved either with high sequencing depth (typically available in a small number of individuals) or via computationally intensive multi-sample linkage disequilibrium (LD)-aware methods. We propose a computationally efficient two-stage combination approach for association analysis, in which single-nucleotide polymorphisms (SNPs) are screened in the first stage via a rapid maximum likelihood (ML)-based method on sequence data directly (without first calling genotypes), and then the selected SNPs are …

Atlas Of Ticks (Acari: Argasidae, Ixodidae) In Germany: 1st Data Update, Franz Rubel, Stefan Zaenker, Alexander Weigand, Dieter Weber, Lidia Chitimia-Dobler, Olaf Kahl

Harold W. Manter Laboratory of Parasitology: Library Materials

The first data update of the atlas of ticks in Germany published in 2021 is presented here. This atlas provides maps based on georeferenced tick locations of 21 species endemic in Germany as well as three tick species that are regularly imported to Germany. The data update includes the following numbers of newly georeferenced tick locations: 17 Argas reflexus, 79 Carios vespertilionis, 2 Dermacentor marginatus, 43 Dermacentor reticulatus, 4 Haemaphysalis concinna, 3 Haemaphysalis punctata, 3 Hyalomma rufipes, 3 Ixodes apronophorus, 9 Ixodes arboricola, 1 Ixodes ariadnae, 30 Ixodes canisuga, …

Protocol To Engineer Nanofilms Embedded Lipid Nanoparticles For Controlled And Targeted Drug Delivery (Nectar), Rashi Porwal, Stephen L. Hayward, Srivatsan Kidambi

Department of Chemical and Biomolecular Engineering: Faculty Publications

We present a protocol to engineer a substrate-mediated delivery platform comprising hyaluronic acid-coated lipid nanoparticles (HALNPs) embedded into polyelectrolyte multilayer (PEM) films. This platform allows controlled spatiotemporal release of lipid nanoparticles (LNP) by embedding them within the polyelectrolyte multilayer films matrix. HALNP conjugate with antibodies also adds the ability for targeted delivery. The use of LNP enables this platform to encapsulate both hydrophobic and hydrophilic drugs. This platform can easily be reproduced and utilized for various biomedical drug delivery applications. For complete details on the use and execution of this protocol, please refer to Hayward et al. (2015, 2016a, 2016b), …

Following The "Iron Lady" And Finding A University: A Phenomenological Study Of Organizational Identity, Erin Pearson

College of Education and Human Sciences: Dissertations, Theses, and Student Research

Higher education culture is steeped in institutional identity and ties to history. But what happens when that history is challenged, and an institution must change its name? While a merger was not initially intended for Kearney State College, merging into the University of Nebraska system was the only way to reflect the change and growth that emulated the type of institution it had become. By interviewing sixteen participants that lived the experience of the merge, a concise and collective history of the events that led to the creation of the University of Nebraska at Kearney was obtained and studied. Through …

Fresh Produce As A Potential Vector And Reservoir For Human Bacterial Pathogens: Revealing The Ambiguity Of Interaction And Transmission, Ahmed Esmael, Rashad R. Al-Hindi, Raed S. Albiheyri, Mona G. Alharbi, Amani A. R. Filimban, Mazen S. Alseghayer, Abdulaziz M. Almaneea, Meshari Ahmed Alhadlaq, Jumaa Ayubu, Addisu D. Teklemariam

Nebraska Center for Virology: Faculty Publications

The consumer demand for fresh produce (vegetables and fruits) has considerably increased since the 1980s for more nutritious foods and healthier life practices, particularly in developed countries. Currently, several foodborne outbreaks have been linked to fresh produce. The global rise in fresh produce associated with human infections may be due to the use of wastewater or any contaminated water for the cultivation of fruits and vegetables, the firm attachment of the foodborne pathogens on the plant surface, and the internalization of these agents deep inside the tissue of the plant, poor disinfection practices and human consumption of raw fresh produce. …

Genome Assembly Of The Brassicaceae Diploid Orychophragmus Violaceus Reveals Complex Whole-Genome Duplication And Evolution Of Dihydroxy Fatty Acid Metabolism, Fan Huang, Peng Chen, Xinyu Tang, Ting Zhong, Taihua Yang, Chinedu Charles Nwafor, Chao Yang, Xianhong Ge, Hong An, Zaiyun Li, Edgar B. Cahoon, Chunyu Zhang

Center for Plant Science Innovation: Faculty Publications

Orychophragmus violaceus is a Brassicaceae species widely cultivated in China, particularly as a winter cover crop in northern China because of its low-temperature tolerance and low water demand. Recently, O. violaceus has also been cultivated as a potential industrial oilseed crop because of its abundant 24- carbon dihydroxy fatty acids (diOH-FAs), which contribute to superior high-temperature lubricant properties. In this study, we performed de novo assembly of the O. violaceus genome. Whole-genome synteny analysis of the genomes of its relatives demonstrated that O. violaceus is a diploid that has undergone an extra whole-genome duplication (WGD) after the Brassicaceae-specific α-WGD event, …

Midwest Roadside Safety Facility Expansion For Enhanced Research Capabilities, Joseph (Lj) Hajduch, Isaac Hansen, Jeff Schroeder, Hozhin Sleman, Ben Wortman

Honors Program: Senior Projects (Public)

As Civil Engineering students, this group was tasked with designing and proposing an engineering solution to a real-world problem. In this case, the Midwest Roadside Safety Facility in Lincoln, Nebraska was looking for a planned proposal to add an additional building to their property for the purpose of additional research and office space. The group decided on the name Zana Engineering – Zana translating to “highly educated” in Kurmanji – to function as the organization responsible for creating this proposal and presentation. Zana Engineering designed this plan on several key factors, most significantly utility, affordability, safety, sustainability, functionality, longevity, and …

Perspectives On Adaptive Functioning And Intellectual Functioning Measures For Intellectual Disabilities Behavioral Research, Laura J. Mattie, Susan J. Loveall, Marie Moore Channell, Derek B. Rodgers

Department of Special Education and Communication Disorders: Faculty Publications

Introduction: Intellectual disability (ID) is a significant limitation in both intellectual ability and adaptive functioning, but many studies of participants with ID only include a measure of overall intellectual functioning when describing their samples. The purpose of this perspective article was to provide a starting point for future research regarding the utility of including measures of both intellectual and adaptive functioning in research focused on ID. In this article, we discuss the differences and similarities between the constructs of intellectual and adaptive functioning, how they are measured, and the benefits of using both measures to describe participant abilities. Data …

Nebraska Politics And The Environment: Framing Political Communication In The State Of Nebraska In Comparison To National Level Discourse, Samuel Taylor

Honors Program: Senior Projects (Public)

Environmental public policy has seen little change on the national level in recent decades due to Congressional gridlock. Politicians on both sides of the aisle have entrenched their opposing viewpoints, and their communication on the topic utilizes issue frames to help sway the public to see their side. On the Republican side, these issue frames take the form of the “scientific uncertainty” and “economic consequences” frames. This study, based on issue framing, surveys the communication of Nebraska’s Republican State Senators to determine if they utilize the same issue frames or if they diverge from their national counterparts. By analyzing recent …

High-Risk Sexual Behavior In Nebraska Adolescents; History, Risk Factors, And Mediation, Kiya Hudson

Honors Program: Senior Projects (Public)

High-risk sexual behavior is a public health crisis that impacts adolescents at staggering rates. In Nebraska, rates of sexually transmitted infection (STI) and sexually transmitted disease (STD) cases have been on the rise over the last four years. The problem this paper addresses is the need to fill in the gaps in knowledge surrounding high-risk sexual behavior in Nebraska adolescents. It is important to address these gaps in knowledge because currently, we are failing our adolescents when it comes to providing them with all of the necessary skills, information, and tools to lead a healthy life. When we know how …

Divination, Brannon Evans

Honors Program: Senior Projects (Public)

This document details my time developing a cross-discipline devised theatre experience. The piece explores the various ways we interact with technology. The start of the process was fueled by one simple question: “What can multi faceted collaboration look like (between peers– not just across disciplines, but through an equally shared devising process)?” Through this documentation, I will be able to reflect upon and learn from my experience as a facilitator, actor, and theatre maker.

This thesis will be broken into six different parts to outline the six stages I underwent while creating the piece: developing the team, source material exploration, …

Syndemics And Social Factors: Infectious Disease Patterns Within The Population Of People Experiencing Homelessness In The United States, Kathleen Berzonsky

Honors Program: Senior Projects (Public)

Individuals experiencing homelessness are at increased risk of suffering from infectious diseases. This is due to a number of social factors and healthcare disparities, as well as the idea of syndemics, by which diseases cluster together to worsen disease burden. Current intervention strategies approach treatment from a post-infection perspective, but reducing transmission rates of infectious diseases within the population of people experiencing homelessness will require a shift in the healthcare framework. The issue of people experiencing homelessness must be viewed through a biosocial lens, focusing on preventative care and treatment. I provide an overview of the social factors governing infectious …

A Multiscale Mechanistic Model Of Human Dendritic Cells For In-Silico Investigation Of Immune Responses And Novel Therapeutics Discovery, Sara Sadat Aghamiri, Bhanwar Lal Puniya, Rada Amin, Tomáš Helikar

Department of Biochemistry: Faculty Publications

Dendritic cells (DCs) are professional antigen-presenting cells (APCs) with the unique ability to mediate inflammatory responses of the immune system. Given the critical role of DCs in shaping immunity, they present an attractive avenue as a therapeutic target to program the immune system and reverse immune disease disorders. To ensure appropriate immune response, DCs utilize intricate and complex molecular and cellular interactions that converge into a seamless phenotype. Computational models open novel frontiers in research by integrating large-scale interaction to interrogate the influence of complex biological behavior across scales. The ability to model large biological networks will likely pave the …

Using Game Theory To Model Tripolar Deterrence And Escalation Dynamics, Grace Farson

Honors Program: Senior Projects (Public)

The study investigated how game theory can been utilized to model multipolar escalation dynamics between Russia, China, and the United States. In addition, the study focused on analyzing various parameters that affected potential conflict outcomes to further new deterrence thought in a tripolar environment.

A preliminary game theoretic model was created to model and analyze escalation dynamics. The model was built upon framework presented by Zagare and Kilgour in their work ‘Perfect Deterrence’. The model is based on assumptions and rules set prior to game play. The model was then analyzed based upon these assumptions using a form of mathematical …

Association Of Excessive Precipitation And Agricultural Land Use With Honey Bee Colony Performance, Gabriela M. Quinlan, Rufus Isaacs, Clint R. V. Otto, Autumn H. Smart, Meghan O. Milbrath

Department of Entomology: Faculty Publications

Context From landscape variables to weather, multiple environmental factors affect honey bees and other pollinators. Detailed honey bee colony assessments in a variety of landscape and weather conditions offer the opportunity to develop a mechanistic understanding of how landscape composition, configuration, and weather are associated with colony nutrition, demography, and productivity.

Objectives Our objective was to test if weather and landscape characteristics (e.g., agricultural versus forested land use) are associated with different honey bee colony outcomes (foraged nectar mass, foraged pollen mass, pupal population size, and adult population size change).

Methods We collected detailed colony measurements on over 450 honey …

Spectral Features Of Non-Nutritive Suck Dynamics In Extremely Preterm Infants, Steven M. Barlow, Chunxiao Liao, Jaehoon Lee, Seungman Kim, Jill L. Maron, Dongli Song, Priya Jegatheesan, Balaji Govindaswami, Bernard J. Wilson, Kushal Bhakta, John P. Cleary

United States Public Health Resources

Background: Non-nutritive suck (NNS) is used to promote ororhythmic patterning and assess oral feeding readiness in preterm infants in the neonatal intensive care unit (NICU). While time domain measures of NNS are available in real time at cribside, our understanding of suck pattern generation in the frequency domain is limited. The aim of this study is to model the development of NNS in the frequency domain using Fourier and machine learning (ML) techniques in extremely preterm infants (EPIs).

Methods: A total of 117 EPIs were randomized to a pulsed or sham orocutaneous intervention during tube feedings 3 times/day …

The Call Sheet: A Six-Part Podcast Interview Series On The Film Industry In Nebraska, Tanner Dykstra

Honors Program: Senior Projects (Public)

My University of Nebraska-Lincoln Honors Thesis project is a six-part podcast interview series entitled The Call Sheet. This is classified as an Applied Knowledge project and encapsulates my interests and areas of study in Journalism, Broadcasting, and Film Studies. I sought out interviews with people who currently reside or once resided in the state of Nebraska who work in association with the film industry. This industry is broad, and my interview subjects reflected this. The six episodes comprising my project are as follows: writer/director Aliza Brugger, writer/professor Michael Svoboda, director of the Mary Riepma Ross Media Arts Center Danny Lee …

An Evidence-Based Design, Translation, And Implementation Of A Hypertension Health Education Pamphlet, Katie Patton

Honors Program: Senior Projects (Public)

Health equity is the opportunity for all to attain their highest level of health. This includes creating understandable educational resources that aid in reducing risk and controlling symptoms of disease. A singular piece of written education material will not be effective among all in a broad population due to the many different backgrounds in which people originate. While this may seem obvious, there is a wide gap between knowledge and action. This gap leads to health disparities, or differences in health status between people that are related to social or demographic factors such as race, gender, income, or geographic region …

Public Distrust, Political Participation, And The Role Of Student Government, Christine Trinh

Honors Program: Senior Projects (Public)

The turn of the 21st century presented a government led by public distrust. More and more people are growing skeptical of the government due to its previous actions, as well as overall longstanding disdain and misinformation, passed on through generations. Like many other fields, political participation is expected to be heavily influenced by rising public distrust in the government. However, there is hope in mitigating public distrust to increase political participation. Previous studies have proven civic engagement, specifically in student government at the collegiate level, leads to creating higher public trust and a wealth of political understanding and knowledge. We …

Facilitating Transformative Innovations In Sustainability Education [Version 2], Martin Melin, Geir Lieblein, Tor Arvid Breland, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Educational strategies globally are changing from an authoritative, top-down model to one focused on greater student and stakeholder participation in planning and implementation of research and educational activities. In addition to emphasis on student-centered education, strategies currently evolve to encompass learning organizations and multistakeholder learning networks. These are essential to address the complexity and scope of tomorrow’s challenges, involving issues that could be called ’wicked problems’ not easily addressed by single disciplines nor resulting in solutions that please all the players. In this study we describe how a transformative innovation – the NEXTFOOD educational approach – may contribute substantially to …

Social Science Researchers' Perceptions Of Inclusive Research Practices For Transgender And Gender Diverse Communities, Christen Seyl

Honors Program: Senior Projects (Public)

Social sciences research has historically excluded or marginalized of transgender and gender diverse (TGD) people. Although TGD affirming research materials can help improve relationships with TGD communities, these sorts of materials are not standard practice. The present study aimed to determine what factors influence social science researchers’ (SSR) willingness to incorporate affirming practices into their research. We hypothesized that more culturally competent SSR will view TGD affirming research materials as more affirming and be more willing to use similar materials in their work. In this study, SSR (n = 32) viewed and rated affirmation and willingness to use five affirming …

Proximate Composition, Retained Water, And Bacterial Load For Two Sizes Of Hybrid Catfish (Ictalurus Furcatus × Ictalurus Punctatus) Fillets At Different Process Steps, Manirul Haque, Juan L. Silva

Department of Food Science and Technology: Faculty Publications

The catfish processors in the US are required to state the maximum percentage of retained water content (RWC) on the product label. The objectives of our study were to quantify the RWC of processed hybrid catfish fillets from proximate composition and the bacterial load at different processing points. Water content was determined using oven-dry (AOAC950.46,1990) and Near-infrared (NIR) spectroscopy. Protein and fat content were determined by NIR spectrometer. Psychrotrophic (PPC) and Total Coliform (TCC) counts were enumerated using 3MPetrifilmTM. The fillets’ overall baseline water, protein, and fat content were 77.8, 16.7 and 5.7%, respectively. The RWC of final fresh and …

Planning For The Lake Izabal Basin Research Endeavor (Libre) Continental Scientific Drilling Project In Eastern Guatemala, Jonathan Obrist-Farner, Andreas Eckert, Peter M. J. Douglas, Liseth Perez, Alex Correa-Metrio, Bronwen L. Konecky, Thorsten Bauersachs, Susan Zimmerman, Stephanie Scheidt, Mark Brenner, Steffen Kutterolf, Jeremy Maurer, Omar Flores, Caroline M. Burberry, Anders Noren, Amy Myrbo, Matthew Lachniet, Nigel Wattrus, Derek Gibson, The Libre Scientific Team

Department of Earth and Atmospheric Sciences: Faculty Publications

As Earth’s atmospheric temperatures and human populations increase, more people are becoming vulnerable to natural and human-induced disasters. This is particularly true in Central America, where the growing human population is experiencing climate extremes (droughts and floods), and the region is susceptible to geological hazards, such as earthquakes and volcanic eruptions, and environmental deterioration in many forms (soil erosion, lake eutrophication, heavy metal contamination, etc.). Instrumental and historical data from the region are insufficient to understand and document past hazards, a necessary first step for mitigating future risks. Long, continuous, well-resolved geological records can, however, provide a window into past …

Social Transmission Of Predator Information Through Referential Alarm Calls Within And Across Species, Carly Trebac

Honors Program: Senior Projects (Public)

Animals can encode information about a predator’s size, identity, or threat through alarm calls. This can provide referential information that can be used by individuals within and across species receiving the information. Referential alarm calls can encode information through changes in structure or rate of the call, and these variances in their call can elicit different responses, such as fleeing or mobbing, in conspecifics and heterospecifics. We aimed to investigate whether white-breasted nuthatch alarm calls can encode referential information and elicit different responses from conspecifics. Previous studies showed that a related species of nuthatch varies their call rate in the …

Pan-Arctic Soil Moisture Control On Tundra Carbon Sequestration And Plant Productivity, Donatella Zona, Peter M. Lafleur, Koen Hufkens, Beniamino Gioli, Barbara Bailey, George Burba, Eugénie S. Euskirchen, Jennifer D. Watts, Kyle A. Arndt, Mary Farina, John S. Kimball, Martin Heimann, Mathias Göckede, Martijn Pallandt, Torben R. Christensen, Mikhail Mastepanov, Efrén López-Blanco, Albertus J. Dolman, Roisin Commane, Charles E. Miller, Josh Hashemi, Lars Kutzbach, David Holl, Julia Boike, Christian Wille, Torsten Sachs, Aram Kalhori, Elyn R. Humphreys, Oliver Sonnentag, Gesa Meyer, Gabriel H. Gosselin, Philip Marsh, Walter C. Oechel

Daugherty Water for Food Global Institute: Faculty Publications

Long-term atmospheric CO₂ concentration records have suggested a reduction in the positive effect of warming on high-latitude carbon uptake since the 1990s. A variety of mechanisms have been proposed to explain the reduced net carbon sink of northern ecosystems with increased air temperature, including water stress on vegetation and increased respiration over recent decades. However, the lack of consistent long-term carbon flux and in situ soil moisture data has severely limited our ability to identify the mechanisms responsible for the recent reduced carbon sink strength. In this study, we used a record of nearly 100 site-years of eddy covariance …

Predicting Mobility Using Limited Data During Early Stages Of A Pandemic, Michael T. Lash, S. Sajeesh, Özgür M. Araz

Department of Marketing: Faculty Publications

The COVID-19 pandemic has changed consumer behavior substantially. In this study, we explore the drivers of consumer mobility in several metropolitan areas in the United States under the perceived risks of COVID-19. We capture multiple dimensions of perceived risk using local and national cases and death counts of COVID-19, along with real-time Google Trends data for personal protective equipment (PPE). While Google Trends data are popular inputs in many studies, the risk of multicollinearity escalates with the addition of more relevant terms. Therefore, multicollinearity-alleviating methods are needed to appropriately leverage information provided by Google Trends data. We develop and utilize …