Digital Commons Network^™

A Self-Marker-Like Protein Governs Hemocyte Allorecognition In Halocynthia Roretzi, Masaki Ema, Taizo Okada, Miki Takahashi, Masato Uchiyama, Hideo Kubo, Hideaki Moriyama, Hitoshi Miyakawa, Midori Matsumoto

School of Biological Sciences: Faculty Publications

Background: Self-incompatibility, fusion/non-fusion reactions, and contact reactions (CRs) have all been identified as allorecognition phenomena in ascidians. CR is a reaction characteristic of the hemocytes of Halocynthia roretzi, whereby they release phenol oxidase (PO) upon contact with non-self hemocytes. Thus, these cells may represent a primitive form of the vertebrate immune system. In the present study, we focused on the CR of H. roretzi hemocytes and sought to identify self-marker proteins that distinguish between self and non-self cells.

Results: We initially generated a CR-inducing monoclonal antibody against the complete hemocyte membraneprotein complement (mAb11B16B10). This antibody was identified based on the …

Comparison Of Feeding Diets Diluted With Sorghum-Sudangrass Silage Or Low-Quality Grass On Nutrient Intake And Digestibility And Growth Performance Of Holstein Dairy Heifers, Lingyan Li, Nancy M. Esser, Robin K. Ogden, Wayne K. Coblentz, Matthew S. Akins

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

This study was carried out to evaluate the nutrient intakes and growth of dairy heifers offered an alfalfa silage– corn silage diet (CON; 14.3% crude protein, 61.1% total digestible nutrients, 47.9% neutral detergent fiber) compared with diets containing 1 of 2 types of sorghumsudangrass (SS) silages: conventional or photoperiod sensitive. The objective of the study was to determine the potential to use SS to control dry matter (DM) and nutrient intakes and weight gain. Both diets were similar in nutrient composition, with approximately 13% crude protein, 60 to 61% total digestible nutrients, and 55% neutral detergent fiber. Seventy-two Holstein heifers …

From Field To Film: Mosquito Surveillance And Survey Of Us Adults' Knowledge And Attitudes Towards Arthropod-Borne Disease Vectors, Justine Laviolette

Department of Entomology: Dissertations, Theses, and Student Research

Mosquito-borne disease is a public health challenge that warrants an active surveillance program for the identification of mosquito populations and the education of the public for prevention and protection against disease-transmitting arthropods. The communication of science to the public is necessary to prevent disease, change behavior, and promote a dialog between scientists and the public.

People are accustomed to high quality entertainment, which begs the question, “If we made science more entertaining, would the public be more interested?”

To address these issues, the objectives of this study are: 1) identify mosquito species and abundance at the US Meat Animal Research …

Deep Kernel And Deep Learning For Genome-Based Prediction Of Single Traits In Multienvironment Breeding Trials, José Crossa, Johannes W.R. Martini, Daniel Gianola, Paulino Pérez-Rodríguez, Diego Jarquin, Philomin Juliana, Osval Antonio Montesinos López, Jaime Cuevas

Department of Agronomy and Horticulture: Faculty Publications

Deep learning (DL) is a promising method for genomic-enabled prediction. However, the implementation of DL is difficult because many hyperparameters (number of hidden layers, number of neurons, learning rate, number of epochs, batch size, etc.) need to be tuned. For this reason, deep kernel methods, which only require defining the number of layers, may be an attractive alternative. Deep kernel methods emulate DL models with a large number of neurons, but are defined by relatively easily computed covariance matrices. In this research, we compared the genome-based prediction of DL to a deep kernel (arc-cosine kernel, AK), to the commonly used …

Amodal Instance Segmentation And Multi-Object Tracking With Deep Pixel Embedding, Yanfeng Liu

Department of Electrical and Computer Engineering: Dissertations, Theses, and Student Research

This thesis extends upon the representational output of semantic instance segmentation by explicitly including both visible and occluded parts. A fully convolutional network is trained to produce consistent pixel-level embedding across two layers such that, when clustered, the results convey the full spatial extent and depth ordering of each instance. Results demonstrate that the network can accurately estimate complete masks in the presence of occlusion and outperform leading top-down bounding-box approaches.

The model is further extended to produce consistent pixel-level embeddings across two consecutive image frames from a video to simultaneously perform amodal instance segmentation and multi-object tracking. No post-processing …

Genus Olivensa Lane, 1965 In French Guiana, And Description Of A New Species (Coleoptera: Cerambycidae: Lamiinae), Pierre-Henri Dalens, Frédéric Robin

Insecta Mundi

Olivensa sonzognii Dalens and Robin, sp. nov. (Coleoptera: Cerambycidae: Lamiinae) is described from French Guiana and compared to other local species. A new key for the genus Olivensa Lane, 1965 is proposed.

Modeling Elementary Students’ Ideas About Heredity: A Comparison Of Curricular Interventions, Cory Forbes, Dante Cisterna, Devarati Bhattacharya, Ranu Roy

School of Natural Resources: Faculty Publications

Learning about heredity is important across the K–12 continuum. However, these ideas may be challenging for students. We examined third-grade students’ ideas about heredity in the context of a new, six-week, model-based science unit that uses corn as a model organism to support students’ ideas about heredity. We analyzed data collected during implementation of the unit, including student artifacts and interviews. We compared these data to those from a pilot version of the curriculum – implemented in the prior year – that was focused on the same disciplinary concepts but was not designed around scientific modeling. Our findings illustrate levels …

Ciencia De Las Mujeres: Experiencias En La Cadena Textil Desde Los Ayllus De Challapata, Denise Y. Arnold, Elvira Espejo

Textile Research Works

En el contexto de la crisis económica que atravesó Bolivia en los años ochenta, una comunidad de puna de pastores andinos, Livichuco, que forma parte integral del ayllu mayor de Qaqachaka, emprendió por iniciativa propia un proceso de mejoramiento de su producción textil, con un programa de rescate de los tintes naturales de la región. Con recursos mínimos, los comunarios compraron ollas y bateas metálicas, y comenzaron a preguntar a las personas mayores sobre sus conocimientos prácticos tradicionales en el ámbito de la tinción de textiles. Durante un período de diez años, y en coordinación con varias instituciones —incluida la …

Small Ruminant Health Intervention Calendar In Ethiopia, Mesfin Mekonnen, Ayalew Assefa, Tesfalem Nane, Firdawok Ayele, Asrat Arke, Belay Elias, Barbara Wieland

Daugherty Water for Food Global Institute: Faculty Publications

Contents

1 Background................................................................................................... 3
2 Developing the health intervention calendar............................................................ 4
The treatment calendar ......................................................... 4 Applying the calendar..................................................................... 5 4 References................................................................... 8

Of Water Jars And Women: A Re-Evaluation Of Fountain House Imagery On Late Archaic Black-Figure Hydriai, Christopher Askew

School of Art, Art History, and Design: Theses and Student Creative Work

From approximately 530 to 500 BCE, images of fountain houses became popular subjects on black-figure hydriai produced in or around ancient Athens. These scenes often involve groups of unidentified women gathering around a fountain spout, typically attached to an ornate architectural structure, in order to fill their water jars. Although isolated pottery sherds depicting these scenes have been discovered in Greece, approximately seventy-five of these scenes have been identified on Attic hydriai depicting such scenes were discovered in Etruscan tombs. Past scholarship has categorized these images either as genre scenes, which represent a domestic activity characteristic of everyday life, or …

Index To Volume 87

Nebraska Bird Review

14 pages: Akers, Danny 108 to Zeglen, Nancy 45

2019 Hitchcock Raptor Banding Project In Perspective, Jerry Toll

Nebraska Bird Review

Hitchcock Nature Center in Pottawattamie County, north of Crescent, Iowa, is home to the Hitchcock HawkWatch and Raptor Banding Project. The Nature Center is in the heart of the Loess Hills which, together with the flat expanse of the Missouri River Valley to the west, provides the perfect conditions for creating the updraft that aids migrating birds. The Hawkwatch began in 1992, and every fall from September through December, birds-of-prey enthusiasts gather on the 45-foot observation tower to watch and count thousands of eagles, hawks, and other raptors as they migrate south. Every year since 2007, Sandy Reinken and I …

The Nebraska Bird Review, Volume 87 December 2019 Number 4

Nebraska Bird Review

Fall Field Report, August - November 2019, by W. Ross Silcock …118-138

2019 Hitchcock Raptor Banding Project in Perspective, by Jerry Toll …138-147

Imperial Fall Field Days, Sept 13-15, 2019 …148-152

Index to Volume 87 …153-166

Subscription and Organization Information …167

Biclustermd: An R Package For Biclustering With Missing Values, John Reisner, Hieu Pham, Sigurdur Olafsson, Stephen Vardeman, Jing Li

The R Journal

Biclustering is a statistical learning technique that attempts to find homogeneous partitions of rows and columns of a data matrix. For example, movie ratings might be biclustered to group both raters and movies. biclust is a current R package allowing users to implement a variety of biclustering algorithms. However, its algorithms do not allow the data matrix to have missing values. We provide a new R package, biclustermd, which allows users to perform biclustering on numeric data even in the presence of missing values.

Modeling Regimes With Extremes: The Bayesdfa Package For Identifying And Forecasting Common Trends And Anomalies In Multivariate Time-Series Data, Eric J. Ward, Sean C. Anderson, Luis A. Damiano, Mary E. Hunsicker, Michael A. Litzow

The R Journal

The bayesdfa package provides a flexible Bayesian modeling framework for applying dynamic factor analysis (DFA) to multivariate time-series data as a dimension reduction tool. The core estimation is done with the Stan probabilistic programming language. In addition to being one of the few Bayesian implementations of DFA, novel features of this model include (1) optionally modeling latent process deviations as drawn from a Student-t distribution to better model extremes, and (2) optionally including autoregressive and moving-average components in the latent trends. Besides estimation, we provide a series of plotting functions to visualize trends, loadings, and model predicted values. A secondary …

Serological Survey And Pathogen Exposure Of Adult Female White-Tailed Deer In The Western Dakotas, Katherine L. Moratz, Bailey S. Gullikson, Eric S. Michel, Daniel M. Grove, Jonathan A. Jenks, William Jensen

The Prairie Naturalist

Establishing baseline values for pathogen exposure and nutritional indices is necessary to monitor population health. However, little is known about white-tailed deer (Odocoileus virginianus) pathogen exposure and nutritional condition in the Northern Great Plains. Our objective was to assess pathogen exposure and establish nutritional indices for female white-tailed deer in Dunn and Grant counties, North Dakota and Perkins County, South Dakota. During 2014, we collected blood serum from 150 adult female white-tailed deer. Pathogens with the highest antibody prevalence included West Nile Virus (WNV; 85%), epizootic hemorrhagic disease (48%), and malignant catarrhal fever (32%). Serum values for creatine …

Imperial Fall Field Days, Janis Paseka

Nebraska Bird Review

The 2019 NOU Fall Field Days were held in Imperial, Chase County, on September 13 - 15, with 59 registered. Field trips were led by Mark Brogie, Bill Flack, and T. J. Walker to the Wauneta cemetery, Frenchman WMA, Hayes Center WMA, Enders Reservoir WMA and SRA, Champion Mill Lake, Swinging Bridge Arboretum, Church Grove Recreation Area, Rock Creek Lake SRA and Fish Hatchery, and Swanson Reservoir SRA and WMA. Among the highlights were Osprey, which were seen at several locations, Sabine’s Gull, Ferruginous Hawk, Burrowing Owl, Red-naped Sapsucker, Merlin, and Prairie Falcon. Anita Breckbill, Doctor of Musical Arts, head …

Bats Of The Loess Hills Ecoregion Of Southeast Nebraska, Virgil Brack Jr, Dale W. Sparks, Darwin C. Brack

The Prairie Naturalist

We surveyed bats at 49 sites in the Loess Hills Ecoregion of southeastern Nebraska, along the western edge of the eastern forest biome in eastern Richardson, Nemaha, and Otoe counties. We completed this study shortly before the northern long-eared bat (Myotis septentrionalis) was listed by the United States Fish and Wildlife Service under the Endangered Species Act. The expectation of listing, along with potential presence of the endangered Indiana bat (Myotis sodalis), motivated the study. We captured 183 bats of five species: eastern red bat (Lasiurus borealis) (n = 103; 56 %), big brown …

Feeling It: Toward Style As Culturally Structured Intuition, Keith Rhodes

Department of English: Faculty Publications

I have been moved to write a serious article about teaching style not because I have great and earth-shaking method to impart, but in some sense because I do not, even after years of study—including the small bit of empirical research at the core of this article. Style, as it turns out, remains as difficult, complex, and ultimately intuitive as most of the rest of writing. I hope, ultimately, to encourage writing teachers to focus more attention on style, basing approaches on what we already know rather than waiting and hoping for some flawless system to materialize. Indeed, by the …

Cultural Heritage And Local Ecological Knowledge Under Threat: Two Caribbean Examples From Barbuda And Puerto Rico, Rebecca Boger, Sophia Perdikaris, Isabel Rivero-Collazo

School of Global Integrative Studies: Faculty Publications

While the impacts to the infrastructures in Barbuda and Puerto Rico by Hurricanes Irma and Maria have received attention in the news media, less has been reported about the impacts of these catastrophic events on the tangible and intangible cultural heritage of these Caribbean islands. This report provides an assessment of the impacts on the cultural heritage by these storms; tangible heritage includes historic buildings, museums, monuments, documents and other artifacts and intangible heritage includes traditional artistry, festivities, and more frequent activities such as religious services and laundering. While the physical destruction was massive, the social contexts in which these …

Plant Community Composition And Structure Monitoring At Wind Cave National Park, 2019 Data Report, Theresa L. Schaffner, Daniel J. Swanson, Stephanie L. Rockwood

United States National Park Service: Publications

Abstract

This report presents the results of the Northern Great Plains Inventory and Monitoring Network (NGPN) and Northern Great Plains Fire Ecology Program (NGPFire) vegetation monitoring at Wind Cave National Park (WICA) in 2019. This was the ninth year of combined monitoring efforts.

Crew members from NGPN visited 18 long-term monitoring plots to collect data representing the plant communities at WICA. The NGPFire program collected pre- and post-burn data from an additional 37 plant community and forest structure monitoring plots. This work is part of a long-term monitoring effort designed to evaluate the condition of the vegetation community and understand …

Bioresorbable Composite Stents For Enhanced Response Of Vascular Smooth Muscle Cells, Hozhabr Mozafari

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Formation of arterial plaque and stenosis is one of the main cardiovascular disease risk factors. Stenting is a popular approach to increase the inner diameter of the artery and provide an acceptable lumen gain. This is achieved by applying internal pressure to the arterial wall. Despite the desirable outcomes of this procedure, there are complexities and challenges that are being discussed among scholars in this area. Restenosis is one of these complications, in which smooth muscles cell start proliferation and remodeling in response of induced mechanical stresses. Another important issue is the placement of the stent and possible migration due …

Natural Resource Condition Assessment, Homestead National Monument Of America, David S. Jones, Roy Cook, John Sovell, Christopher Herron, Jay Benner, Karin Decker, Andrew Beavers, Johannes Beebee, David Weinzimmer

United States National Park Service: Publications

Executive Summary

The National Park Service (NPS) Natural Resource Condition Assessment (NRCA) Program administered by the NPS Water Resources Division evaluates current conditions for important natural resources and resource indicators using primarily existing information and data. NRCAs also report on trends in resource condition when possible, identify critical data gaps, and characterize a general level of confidence for study findings. This NRCA complements historic resource assessments, is multi-disciplinary in scope, employs a hierarchical indicator framework, identifies and develops reference conditions/values for comparison against current conditions, and emphasizes spatial evaluation of conditions and GIS (map) products.

Congress established the Homestead National …

Plant Community Composition And Structure Monitoring At Agate Fossil Beds National Monument, 2019 Data Report, Molly B. Davis

United States National Park Service: Publications

Abstract

This report presents the results of vegetation monitoring efforts in 2019 at Agate Fossil Beds National Monument (AGFO) by the Northern Great Plains Inventory and Monitoring Network (NGPN) and the Northern Great Plains Fire Ecology Program (NGPFire). This was the ninth year of combined monitoring efforts.

In 2019, crew members from NGPN visited 6 long-term plant community monitoring (PCM) plots to collect data on the upland mixed-grass prairie plant communities at AGFO. This work is part of a long-term monitoring program established to better understand the condition of the vegetation community and how it changes over time. NGPN staff …

Hunters And Their Perceptions Of Public Access: A View From Afield, Joseph J. Fontaine, Alexis D. Fedele, Lyndsie S. Wszola, Lindsey N. Messinger, Christopher J. Chizinski, Jeffery J. Lusk, Karie L. Decker, J. Scott Taylor, Erica F. Stuber

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Declining hunter participation threatens cultural traditions and public support for conservation, warranting examination of the forces behind the downward trajectory. Access to lands for hunting, an often-cited reason for non participation, may play a critical role in the retention and recruitment of hunters. Meeting the access needs of a diverse hunting constituency requires understanding how hunters use and perceive access opportunities, particularly public-access sites. Given that perceptions of access are entirely place based and degrade with time, traditional postseason survey methods may fail to adequately quantify the value of public access to the hunting constituency. To overcome the potential limitations …

British Poetry Of The Long Nineteenth Century, Beverley Rilett

Zea E-Books Collection

A Selection for College Students, including Charlotte Smith, William Blake, William Wordsworth, Samuel Taylor Coleridge, George Gordon Byron, Percy Bysshe Shelley, John Keats, Elizabeth Barrett Browning, Alfred Tennyson, Robert Browning, Emily Brontë, George Eliot, Matthew Arnold, George Meredith, Dante Gabriel Rossetti, Christina Rossetti, Oscar Wilde, and Mary Elizabeth Coleridge.

Includes biographical sketches.

doi 10.32873/unl.dc.zea.1096

Effects Of Different Water And Nitrogen Regimens On Yield Of Winter Wheat Produced In Nebraska, Joseph Emory Davis

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Wheat is the 3rd most prominent crop in the United States and approximately 50% is exported annually. Nebraska wheat production is 11^th in the country, and it plays a major role in the state's agricultural economy, especially in western Nebraska. Generally, wheat is grown under dryland conditions and the region grows much more wheat on unirrigated land than it does on irrigated. However, deficit irrigation has shown great value in producing high yielding wheat with much less water than needed for other crops. Finding new ways to leverage irrigation in wheat production may help address the need to produce …

Use Of Uav Imagery And Nutrient Analyses For Estimation Of The Spatial And Temporal Contributions Of Cattle Dung To Nutrient Cycling In Grazed Ecosystems, Amanda E. Shine

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Nutrient inputs from cattle dung are crucial drivers of nutrient cycling processes in grazed ecosystems. These inputs are important both spatially and temporally and are affected by variables such as grazing strategy, water location, and the nutritional profile of forage being grazed. Past research has attempted to map dung deposition patterns in order to more accurately estimate nutrient input, but the large spatial extent of a typical pasture and the tedious nature of identifying and mapping individual dung pats has prohibited the development of a time- and cost-effective methodology. The first objective of this research was to develop and validate …

Evaluating The Efficacy Of Whole Cooked Enriched Egg In Modulating Health-Beneficial Biological Activities, Emerson Nolasco

Department of Food Science and Technology: Dissertations, Theses, and Student Research

The whole egg is known as nutritious food in the human diet with a wide reach due to its accessibility. It’s highly bioavailable proteins and dietary compounds, and their health-beneficial properties make the egg a potential functional food. Still, little is known about how the production and processing methods can modulate its potential health-beneficial properties. To attend the knowledge gaps, the study established objectives look to evaluate the effect of the hen breed, egg enrichment, and cooking methods. The hen breed and egg enrichment maintained overall the egg quality. Confirming the capacity of the egg industry of improving the egg …

Experiential Learning Tools For 5th Grade Scientific Concepts, Megan Cramer

College of Education and Human Sciences: Dissertations, Theses, and Student Research

The experiential learning theory (ELT) has been integrated in educational programs through wildlife conservation education, Human-Animal Interaction (HAI), and Equine Facilitated Learning (EFL). The goal of this study was to evaluate the effect of different experiential learning tools, specifically animals and equine, on gaining knowledge through measuring the retention of 5th grade scientific concepts. Students attending the Institute of Wilderness Studies (IWS) at Pine Cove Camps in Central Texas were used to evaluate student knowledge through a quantitative assessment (n=142). Student knowledge was measured a total of three times using three assessments, one pretest and two posttests. Overall, the total …