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Migratory Flyways May Affect Population Structure In Double‐Crested Cormorants, Steven J.A. Kimble, Brian S. Dorr, Katie C. Hanson-Dorr, Olin E. Rhodes Jr., Travis L. Devault Feb 2020

Migratory Flyways May Affect Population Structure In Double‐Crested Cormorants, Steven J.A. Kimble, Brian S. Dorr, Katie C. Hanson-Dorr, Olin E. Rhodes Jr., Travis L. Devault

United States Department of Agriculture Wildlife Services: Staff Publications

Double‐crested cormorants (Phalacrocorax auritus) recovered from a demographic bottleneck so well that they are now considered a nuisance species at breeding and wintering grounds across the United States and Canada. Management of this species could be improved by refining genetic population boundaries and assigning individuals to their natal population. Further, recent radio‐telemetry data suggest the existence of Interior and Atlantic migratory flyways, which could reduce gene flow and result in substantial genetic isolation. In this study, we used 1,784 individuals collected across the eastern United States, a large panel of microsatellite markers developed for this species, and individuals banded as …


Bug Basics: A Quizlet Style Educational Trivia Game, Glynnys D. Pentecoste Feb 2020

Bug Basics: A Quizlet Style Educational Trivia Game, Glynnys D. Pentecoste

Department of Entomology: Distance Master of Science Projects

The goal of this project is to create and develop an augmented reality (AR) game that stimulates an interest in entomology and related ecological concepts. This project seeks to leverage AR technology to combine real-world overlays with virtual, computer-generated enhancements to foster or bolster an interest in insects and their natural habitat(s). Using scavenger hunt and geocaching strategies as the underlying conceptual paradigm, students will navigate a series of challenges to virtually collect a predetermined number of insect-related items or tokens. Using a trivia- or quizlet-style interface, knowledge of fundamental entomological concepts will be emphasized throughout. Successful navigation and completion …


Paul Johnsgard: Comprehensive Vita And Bibliography, Paul A. Johnsgard Jan 2020

Paul Johnsgard: Comprehensive Vita And Bibliography, Paul A. Johnsgard

Papers in Ornithology

A current curriculum vitae and comprehensive bibliography for Paul A. Johnsgard, Foundation Regents Professor Emeritus at University of Nebraska-Lincoln. Dr. Johnsgard has been the author of (at least) 91 books, 140 journal articles or chapters, 100 reviews or popular articles; the subject of 7 profile articles; and the director for 12 Ph.D. dissertations and 12 M.S. theses—all listed here. Dates covered are 1953 through 2020. Dr. Johnsgard is also an illustrator and photographer.

Updated January 2021.


Internships In Nebraska Agricultural Cooperatives, Greg Mckee Jan 2020

Internships In Nebraska Agricultural Cooperatives, Greg Mckee

Cornhusker Economics

Agricultural cooperatives are prominent employers across Nebraska. Several have developed internship programs. Cooperatives recruit interns to attract fulltime position applicants, to expose interns to various aspects of the cooperative business model as well as addressing short term labor needs. Students participate in internships to develop skills for career planning.

Nebraska agricultural cooperatives offered approximately one 100 internships in 2019. The number of cooperatives offering internships is increasing; at least two offered internships for the first time last year. Others are looking to strengthen their existing programs.

Internship program design varies across cooperatives. Relatively small agricultural cooperatives provide an overall work …


Prey Of Reintroduced Fishers And Their Habitat Relationships In The Cascades T Range, Washington, Mitchell A. Parsons, Jeffrey C. Lewis, Jonathan N. Pauli, Tara Chestnut, Jason I. Ransom, David O. Werntz, Laura R. Prugh Jan 2020

Prey Of Reintroduced Fishers And Their Habitat Relationships In The Cascades T Range, Washington, Mitchell A. Parsons, Jeffrey C. Lewis, Jonathan N. Pauli, Tara Chestnut, Jason I. Ransom, David O. Werntz, Laura R. Prugh

United States National Park Service: Publications

Conservation and recovery of forest carnivores requires an understanding of their habitat requirements, as well as requirements of their prey. In much of the western United States, trapping and habitat loss led to extirpations of fishers (Pekania pennanti) by the mid-20th century, and reintroductions are ongoing to restore fishers to portions of their former range. Fisher recovery in Washington State has been limited by isolation from other populations, but other potentially important factors, such as diet of fishers in this region and prey availability, have not been thoroughly investigated. We collected hair samples from potential prey and fishers for stable …


Optimal Bait Density For Delivery Of Acute Toxicants To Vertebrate Pests, Kim M. Pepin, Nathan P. Snow, Kurt C. Vercauteren Jan 2020

Optimal Bait Density For Delivery Of Acute Toxicants To Vertebrate Pests, Kim M. Pepin, Nathan P. Snow, Kurt C. Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Oral baiting is a fundamental method for delivering toxicants to pest species. Planning baiting strategies is challenging because bait-consumption rates depend on dynamic processes including space use and demographics of the target species. To determine cost-effective strategies for optimizing baiting, we developed a spatially explicit model of population dynamics using field-based measures of wild-pig (Sus scrofa) space use, bait consumption, and mortality probabilities. The most cost-effective baiting strategy depended strongly on the population reduction objective and initial density. A wide range of baiting strategies were cost-effective when the objective was 80% population reduction. In contrast, only a narrow range of …


Wild Ruminants As Reservoirs Of Domestic Livestock Gastrointestinal T Nematodes, Carly D. Barone, Janneke Wit, Eric P. Hoberg, John S. Gilleard, Dante S. Zarlenga Jan 2020

Wild Ruminants As Reservoirs Of Domestic Livestock Gastrointestinal T Nematodes, Carly D. Barone, Janneke Wit, Eric P. Hoberg, John S. Gilleard, Dante S. Zarlenga

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Gastrointestinal nematode (GIN) infections in cattle cause appetite suppression which leads to poor feed conversion, reduced weight gain and reduced milk production. Overuse and exclusive reliance on anthelmintic drugs has resulted in widespread resistance in many parasitic nematode species infecting livestock making control increasingly difficult. Wild ruminants are competent hosts of a number of nematode species that typically infect and are best adapted for cattle, sheep, and goats. Thus, the potential exists for wild ruminants to act as reservoirs in the translocation of domestic GIN, including those carrying anthelmintic resistance mutations as well as susceptible genotypes. The potential for parasite …


Brodifacoum Residues In Fish Three Years After An Island-Wide Rat Eradication Attempt In The Tropical Pacific, Shane R. Siers, Aaron B. Shiels, Steven F. Volker, Kristen Rex, William C. Pitt Jan 2020

Brodifacoum Residues In Fish Three Years After An Island-Wide Rat Eradication Attempt In The Tropical Pacific, Shane R. Siers, Aaron B. Shiels, Steven F. Volker, Kristen Rex, William C. Pitt

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive rats are known to threaten natural resources and human health and safety. Island-wide rat eradication attempts have been increasing in number and scale during the past several decades, as has the frequency of eradication success. The most common method to remove all rats from an island is to broadcast anticoagulant rodenticide bait into every rat’s home range on the island. Broadcast of toxicants can put humans and other nontarget species in marine and terrestrial environments at risk of exposure. The persistence of anticoagulant residues is somewhat unknown, particularly in marine environments. Three years after ~ 18,000 kg of 25 …


Predicting The Potential Distribution Of Amblyomma Americanum (Acari: Ixodidae) Infestation In New Zealand, Using Maximum Entropy‑Based Ecological Niche Modelling, R. K. Raghavan, A. C.G. Heath, K. E. Lawrence, R. R. Ganta, A. T. Peterson, W. E. Pomroy Jan 2020

Predicting The Potential Distribution Of Amblyomma Americanum (Acari: Ixodidae) Infestation In New Zealand, Using Maximum Entropy‑Based Ecological Niche Modelling, R. K. Raghavan, A. C.G. Heath, K. E. Lawrence, R. R. Ganta, A. T. Peterson, W. E. Pomroy

Harold W. Manter Laboratory of Parasitology: Library Materials

Although currently exotic to New Zealand, the potential geographic distribution of Amblyomma americanum (L.), the lone star tick, was modelled using maximum entropy (Max- Ent). The MaxEnt model was calibrated across the native range of A. americanum in North America using present-day climatic conditions and occurrence data from museum collections. The resulting model was then projected onto New Zealand using both present-day and future climates modelled under two greenhouse gas emission scenarios, representative concentration pathways (RCP) 4.5 (low) and RCP 8.5 (high). Three sets of WorldClim bioclimatic variables were chosen using the jackknife method and tested in MaxEnt using different …


The Enigmatic Spelaeorhynchidae Oudemans, 1902 (Acari: Mesostigmata) Blood-Feeding Ectoparasites Infesting Neotropical Bats, With Catalog And Notes On A Collection From The Manú Biosphere Reserve In Peru, Donald Gettinger, Madalyne Epperson, Candy Hermasillo, Scott L. Gardner Jan 2020

The Enigmatic Spelaeorhynchidae Oudemans, 1902 (Acari: Mesostigmata) Blood-Feeding Ectoparasites Infesting Neotropical Bats, With Catalog And Notes On A Collection From The Manú Biosphere Reserve In Peru, Donald Gettinger, Madalyne Epperson, Candy Hermasillo, Scott L. Gardner

MANTER: Journal of Parasite Biodiversity

A survey of ectoparasites associated with bats collected along an elevational transect in the Manú Biosphere Reserve, Peru, includes specimens of two species of an unusual and rarely collected family of parasitic mites, the Spelaeorhynchidae Oudemans, and reveals information on the natural occurrence of these infections. In lowland rainforest (450–1,000 m) along the Rio Alto Madre de Dios, Spelaeorhynchus soaresi Peracchi was recorded exclusively infecting two species of frugivorous Carollia, C. brevicauda and C. perspicillata. At higher elevations in the mountains and cloud forests, Spelaeorhynchus praecursor Neumann exclusively infected two species of nectarivorous Anoura, A. cultrata and A. …


Insights About Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): What Is Tetrabothrius Jagerskioeldi?, Eric P. Hoberg, Kaylen Marie Soudachanh Jan 2020

Insights About Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): What Is Tetrabothrius Jagerskioeldi?, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

Tetrabothriid cestodes are characteristic helminths that infect species of seabirds globally. We begin with the exploration of the diversity of tapeworms of the genus Tetrabothrius Rudolphi, 1819 (Eucestoda: Tetrabothriidae), some of which are distributed among seabirds of the family Alcidae (Charadriiformes) at boreal to higher latitudes of Holarctic seas. During the course of 2 decades of field inventory from 1975 through the early 1990s (in addition to earlier collections assembled by Robert L. Rausch and colleagues in Alaska initiated in the late 1940s), an extensive series of tapeworm specimens attributable to species of Tetrabothrius was recovered from seabirds across the …


The Precolumbian Textiles In The Roemer- And Pelizaeus-Museum Hildesheim, Germany, Lena Bjerregaard Jan 2020

The Precolumbian Textiles In The Roemer- And Pelizaeus-Museum Hildesheim, Germany, Lena Bjerregaard

Zea E-Books Collection

Along the coast of Peru is one of the driest deserts in the world. Here, under the sand, the ancient Peruvians buried their dead wrapped in gorgeous textiles. As organic material keeps almost forever when stored without humidity, light and oxygen, many of the mummies excavated in the last hundred years are in excellent conditions. And so are the textiles wrapped around them. Their clear colors are still dazzling and the textile fibers in good condition. Textiles were highly valued objects in ancient Peru – used for expressing status and diverse messages in these non-literate but highly organized and very …


Long-Term Ecological Research In Southern Brazil Grasslands: Effects Of Grazing Exclusion And Deferred Grazing On Plant And Arthropod Communities, Pedro M.A. Ferreira, Bianca O. Andrade, Luciana R. Podgaiski, Amanda C. Dias, Valerio D. Pillar, Gerhard E. Overbeck, Milton De S. Mendonca Jr., Ilsi I. Boldrini Jan 2020

Long-Term Ecological Research In Southern Brazil Grasslands: Effects Of Grazing Exclusion And Deferred Grazing On Plant And Arthropod Communities, Pedro M.A. Ferreira, Bianca O. Andrade, Luciana R. Podgaiski, Amanda C. Dias, Valerio D. Pillar, Gerhard E. Overbeck, Milton De S. Mendonca Jr., Ilsi I. Boldrini

Department of Agronomy and Horticulture: Faculty Publications

Grazing exclusion may lead to biodiversity loss and homogenization of naturally heterogeneous and species-rich grassland ecosystems, and these effects may cascade to higher trophic levels and ecosystem properties. Although grazing exclusion has been studied elsewhere, the consequences of alleviating the disturbance regime in grassland ecosystems remain unclear. In this paper, we present results of the first five years of an experiment in native grasslands of southern Brazil. Using a randomized block experimental design, we examined the effects of three grazing treatments on plant and arthropod communities: (i) deferred grazing (i.e., intermittent grazing), (ii) grazing exclusion and (iii) a control under …


Microalgae As A Promising And Sustainable Nutrition Source For Managed Honey Bees, Vincent A. Ricigliano Jan 2020

Microalgae As A Promising And Sustainable Nutrition Source For Managed Honey Bees, Vincent A. Ricigliano

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Managed honey bee colony losses are attributed to a number of interacting stressors, but many lines of evidence point to malnutrition as a primary factor. Commercial beekeepers have become increasingly reliant on artificial pollen substitute diets to nourish colonies during periods of forage scarcity and to bolster colony size before pollination services. These artificial diets may be deficient in essential macronutrients (proteins, lipids, prebiotic fibers), micronutrients (vitamins, minerals), and antioxidants. Therefore, improving the efficacy of pollen substitutes can be considered vital to modern beekeeping. Microalgae are prolific sources of plant‐based nutrition with many species exhibiting biochemical profiles that are comparable …


Proceedings Of The Fifteenth North American Crane Workshop, Jane E. Austin, Richard P. Urbanek, Megan E. Brown Jan 2020

Proceedings Of The Fifteenth North American Crane Workshop, Jane E. Austin, Richard P. Urbanek, Megan E. Brown

Proceedings of the North American Crane Workshop

Proceedings of the Fifteenth North American Crane Workshop (2020) edited by Jane E. Austin, Richard P. Urbanek, and Megan E. Brown.


Plains Zebra (Equus Quagga) Behaviour In A Restored Population Reveals Seasonal Resource Limitations, Charli De Vos, Alison J. Leslie, Jason I. Ransom Jan 2020

Plains Zebra (Equus Quagga) Behaviour In A Restored Population Reveals Seasonal Resource Limitations, Charli De Vos, Alison J. Leslie, Jason I. Ransom

United States National Park Service: Publications

A once abundant species, plains zebra (Equus quagga), is declining across much of sub-Saharan Africa. Reintroduction efforts at Majete Wildlife Reserve, Malawi, have resulted in rapid population increases, but little is known about how such populations resemble natural populations socially or behaviourally, and what those attributes may reveal about restoration success. Incorporating behavioural knowledge into conservation efforts is an important tool for managing the effects of habitat fragmentation and resource competition. The aim of this study was to quantify the daylight time budget of both family and bachelor bands of reintroduced plains zebra to determine if such behaviours …


Adaptive Capacity In Ecosystems, David G. Angeler, Hannah Fried-Petersen, Craig R. Allen, Ahjond Garmestani, Dirac L. Twidwell Jr, H.E. Birgé, W. Chuang, V. M. Donovan, T. Eason, C.P. Roberts, S.M. Sundstrom, C.L. Wonkka Jan 2020

Adaptive Capacity In Ecosystems, David G. Angeler, Hannah Fried-Petersen, Craig R. Allen, Ahjond Garmestani, Dirac L. Twidwell Jr, H.E. Birgé, W. Chuang, V. M. Donovan, T. Eason, C.P. Roberts, S.M. Sundstrom, C.L. Wonkka

Department of Agronomy and Horticulture: Faculty Publications

Understanding the adaptive capacity of ecosystems to cope with change is crucial to management. However, unclear and often confusing definitions of adaptive capacity make application of this concept difficult. In this paper, we revisit definitions of adaptive capacity and operationalize the concept. We define adaptive capacity as the latent potential of an ecosystem to alter resilience in response to change. We present testable hypotheses to evaluate complementary attributes of adaptive capacity that may help further clarify the components and relevance of the concept. Adaptive sampling, inference and modeling can reduce key uncertainties incrementally over time and increase learning about adaptive …


The Abyssinian Art Of Louis Agassiz Fuertes In The Field Museum, Paul A. Johnsgard Jan 2020

The Abyssinian Art Of Louis Agassiz Fuertes In The Field Museum, Paul A. Johnsgard

Zea E-Books Collection

This book documents the paintings and drawings executed by Louis Agassiz Fuertes during the Field Museum of Natural History’s seven-month expedition to Ethiopia (Abyssinia) in 1926–27. During that time Fuertes completed 70 field watercolors that illustrate 55 species of birds and four species of mammals. He also executed 34 pencil drawings, which illustrate 13 species of mammals and 11 species of birds, plus numerous miscellaneous sketches and small watercolors. This book identifies and describes the biology of all 69 species of birds and mammals illustrated by Fuertes and includes 32 color reproductions of Fuertes’s watercolors that were published as a …


Alpha-Linolenic Acid-Enriched Butter Promotes Fatty Acid Remodeling And Thermogenic Activation In The Brown Adipose Tissue, Mikyoung You, Rong Fan, Judy Kim, Seung-Ho Shin, Soonkyu Chung Jan 2020

Alpha-Linolenic Acid-Enriched Butter Promotes Fatty Acid Remodeling And Thermogenic Activation In The Brown Adipose Tissue, Mikyoung You, Rong Fan, Judy Kim, Seung-Ho Shin, Soonkyu Chung

Department of Nutrition and Health Sciences: Faculty Publications

Supplementation with n-3 long-chain (LC) polyunsaturated fatty acids (PUFA) is known to promote thermogenesis via the activation of brown adipose tissue (BAT). Agricultural products that are biofortified with α-linolenic acid (ALA), the precursor of n-3 LC PUFA, have been launched to the market, but their impact on BAT function is unknown. This study aimed to evaluate the effects of ALA-biofortified butter on lipid metabolism and thermogenic functions in the BAT. C57BL/6 mice were fed a high-fat diet containing ALA-biofortified butter (n3Bu, 45% calorie from fat) for ten weeks in comparison with the isocaloric high-fat diets prepared from conventional butter or …


Informal Science Experiences Among Urban And Rural Youth: Exploring Differences At The Intersections Of Socioeconomic Status, Gender And Ethnicity, Patricia Wonch Hill, Julia Mcquillan, Eileen A. Hebets, Amy N. Spiegel, Judy Diamond Jan 2020

Informal Science Experiences Among Urban And Rural Youth: Exploring Differences At The Intersections Of Socioeconomic Status, Gender And Ethnicity, Patricia Wonch Hill, Julia Mcquillan, Eileen A. Hebets, Amy N. Spiegel, Judy Diamond

Department of Sociology: Faculty Publications

The current study explores patterns of informal science experiences among youth in urban and rural middle schools by gender and socioeconomic status. Data come from surveys in two Midwestern middle schools, one in a mid-sized city, and the other in a rural-remote town. We asked about participation in informal science activities (e.g. visiting zoos or museums, or watching shows about science) and if youth had participated in science-focused clubs in the last 12 months (e.g. after-school science clubs, 4-H, scouts). Rural youth reported lower rates of participation in after-school science clubs and a greater desire to participate in after-school science …


Arjen Y. Hoekstra 1967–2019, Davy Vanham, Mesfin Mekonnen, Ashok K. Chapagain Jan 2020

Arjen Y. Hoekstra 1967–2019, Davy Vanham, Mesfin Mekonnen, Ashok K. Chapagain

Daugherty Water for Food Global Institute: Faculty Publications

Arjen Hoekstra introduced the water footprint in 20021, building on the concept of virtual water Tony Allan to discuss the role of trade in alleviating water scarcity in the Middle East. He thereby opened a new dimension in the debate around fair and sustainable allocation of freshwater resources. He laid the foundations to show the role of indirect water (that is, water used elsewhere to produce goods we consume) in our daily life beyond our direct use for drinking, cooking or washing. The water footprint is an indicator of direct and indirect water use by a producer or consumer, showing …


Predicting Livestock Depredation Risk By African Lions (Panthera Leo) In A Multi-Use Area Of Northern Tanzania, K. Beattie, E. R. Olson, B. Kissui, A. Kirschbaum, C. Kiffner Jan 2020

Predicting Livestock Depredation Risk By African Lions (Panthera Leo) In A Multi-Use Area Of Northern Tanzania, K. Beattie, E. R. Olson, B. Kissui, A. Kirschbaum, C. Kiffner

United States National Park Service: Publications

Human-wildlife conflicts, especially those involving large carnivores, are of global conservation and livelihood concern and require effective and locally-adapted prevention measures. Risk of lion attack on livestock (i.e. depredation) may vary seasonally and may be associated with variation in wild prey abundance or landscape characteristics. To test these competing hypotheses, we used a resource selection approach, and determined whether prey catchability (indicated by geo-spatial variables), or prey availability (indicated by modeled abundance recorded via camera traps) explained spatial and seasonal variation in livestock depredation risk by African lions on Manyara Ranch Conservancy, a multi-use area in northern Tanzania. Seasonal variation …


On The Transcendental Freedom Of The Intellect, Colin Mclear Jan 2020

On The Transcendental Freedom Of The Intellect, Colin Mclear

Department of Philosophy: Faculty Publications

One well-known point of emphasis in the critical philosophy is that only transcendental idealism can safeguard the possibility of the spontaneity and agent-causal freedom of rational beings. If such freedom were not possible, then in Kant’s estimation there would be no hope for conceiving of rational agents as morally responsible; for if rational agents were totally in the grip of the deterministic causal nexus of the Spatio-temporal world then moral requirements could not apply.

However, as the epigraph above makes clear, Kant also considers the causal nexus of phenomenal nature to threaten the status of human beings not just as …


Local Adaptation Constrains Drought Tolerance In A Tropical Foundation Tree, Kasey E. Barton, Casey Jones, Kyle F. Edwards, Aaron B. Shiels, Tiffany Knight Jan 2020

Local Adaptation Constrains Drought Tolerance In A Tropical Foundation Tree, Kasey E. Barton, Casey Jones, Kyle F. Edwards, Aaron B. Shiels, Tiffany Knight

United States Department of Agriculture Wildlife Services: Staff Publications

  1. Plant species with broad climatic ranges might be more vulnerable to climate change than previously appreciated due to intraspecific variation in climatic stress tolerance. In tropical forests, drought is increasingly frequent and severe, causing widespread declines and altering community dynamics. Yet, little is known about whether foundation tropical trees vary in drought tolerance throughout their distributions, and how intraspecific variation in drought tolerance might contribute to their vulnerability to climate changE.
  2. We tested for local adaptation in seedling emergence and establishment with a full-factorial reciprocal transplant experiment including 27 populations and 109,350 seeds along a 3,500 mm precipitation gradient for …


Retinoic Acid Degradation Shapes Zonal Development Of Vestibular Organs And Sensitivity To Transient Linear Accelerations, Kazuya Ono, James Keller, Omar López Ramírez, Antonia González Garrido, Omid A. Zobeiri, Hui Ho Vanessa Chang, Sherri M. Jones, Andrianna Ayiotis, Gregg Duester, Charles C. Della Santina, Sarath Vijayakumar, Kathleen E. Cullen, Ruth Anne Eatock, Doris K. Wu Jan 2020

Retinoic Acid Degradation Shapes Zonal Development Of Vestibular Organs And Sensitivity To Transient Linear Accelerations, Kazuya Ono, James Keller, Omar López Ramírez, Antonia González Garrido, Omid A. Zobeiri, Hui Ho Vanessa Chang, Sherri M. Jones, Andrianna Ayiotis, Gregg Duester, Charles C. Della Santina, Sarath Vijayakumar, Kathleen E. Cullen, Ruth Anne Eatock, Doris K. Wu

Department of Special Education and Communication Disorders: Faculty Publications

Each vestibular sensory epithelium in the inner ear is divided morphologically and physio- logically into two zones, called the striola and extrastriola in otolith organ maculae, and the central and peripheral zones in semicircular canal cristae. We found that formation of striolar/central zones during embryogenesis requires Cytochrome P450 26b1 (Cyp26b1)- mediated degradation of retinoic acid (RA). In Cyp26b1 conditional knockout mice, formation of striolar/central zones is compromised, such that they resemble extrastriolar/peripheral zones in multiple features. Mutants have deficient vestibular evoked potential (VsEP) responses to jerk stimuli, head tremor and deficits in balance beam tests that are consistent with abnormal …


Swine Slurry Characteristics As Affected By Selected Additives And Disinfectants, Jon Duerschner, Shannon L. Bartelt-Hunt, Kent Eskridge, John E. Gilley, Xu Li, Amy M. Schmidt, Daniel D. Snow Jan 2020

Swine Slurry Characteristics As Affected By Selected Additives And Disinfectants, Jon Duerschner, Shannon L. Bartelt-Hunt, Kent Eskridge, John E. Gilley, Xu Li, Amy M. Schmidt, Daniel D. Snow

Nebraska Water Center: Faculty Publications

Current swine industry practice is to house animals in confinement facilities which capture and store feces and urine as slurry in pits below the production area. Additives and disinfectants may be introduced into the manure pits. This study was conducted to measure the effects of additives and disinfectants on temporal changes in swine slurry characteristics. Slurry from a commercial swine production facility in southeast Nebraska, USA was collected and transferred to 57 L reactors located within a greenhouse. Selected additives and disinfectants were added to the reactors and physical properties, chemical characteristics, and antibiotic concentrations were monitored for 40 days. …


Optfill: A Tool For Infeasible Cycle-Free Gapfilling Of Stoichiometric Metabolic Models, Wheaton L. Schroeder, Rajib Saha Jan 2020

Optfill: A Tool For Infeasible Cycle-Free Gapfilling Of Stoichiometric Metabolic Models, Wheaton L. Schroeder, Rajib Saha

Mid-America Transportation Center: Final Reports and Technical Briefs

Stoichiometric metabolic modeling, particularly genome-scale models (GSMs), is now an indispens- able tool for systems biology. The model reconstruction process typically involves collecting informa- tion from public databases; however, incomplete systems knowledge leaves gaps in any reconstruc- tion. Current tools for addressing gaps use databases of biochemical functionalities to address gaps on a per-metabolite basis and can provide multiple solutions but cannot avoid thermodynami- cally infeasible cycles (TICs), invariably requiring lengthy manual curation. To address these limita- tions, this work introduces an optimization-based multi-step method named OptFill, which performs TIC-avoiding whole-model gapfilling. We applied OptFill to three fictional prokaryotic models …


Niche Modeling Reveals Life History Shifts In Birds At La Brea Over The Last Twenty Millennia, Robert M. Zink, Sebastian Botero-Canola, Helen Martinez, Katelyn M. Herzberg Jan 2020

Niche Modeling Reveals Life History Shifts In Birds At La Brea Over The Last Twenty Millennia, Robert M. Zink, Sebastian Botero-Canola, Helen Martinez, Katelyn M. Herzberg

School of Natural Resources: Faculty Publications

A species presence at a particular site can change over time, resulting in temporally dynamic species pools. Ecological niche models provide estimates of species presence at different time intervals. The avifauna of La Brea includes approximately 120 species dating to approximately 15,000 years ago. Niche models predicted presence at the Last Glacial Maximum for over 90% of 89 landbird species. This confirms that niche modeling produces sensible range estimates at the Last Glacial Maximum. For 97 currently local species that are as yet undocumented at La Brea over 90% were predicted to occur; absence is due to insufficient study, lack …


Sociohydrologic Systems Thinking: An Analysis Of Undergraduate Students’ Operationalization And Modeling Of Coupled Human-Water Systems, Diane Lally, Cory T. Forbes Jan 2020

Sociohydrologic Systems Thinking: An Analysis Of Undergraduate Students’ Operationalization And Modeling Of Coupled Human-Water Systems, Diane Lally, Cory T. Forbes

School of Natural Resources: Faculty Publications

One of the keys to science and environmental literacy is systems thinking. Learning how to think about the interactions between systems, the far-reaching effects of a system, and the dynamic nature of systems are all critical outcomes of science learning. However, students need support to develop systems thinking skills in undergraduate geoscience classrooms. While systems thinking-focused instruction has the potential to benefit student learning, gaps exist in our understanding of students’ use of systems thinking to operationalize and model SHS, as well as their metacognitive evaluation of systems thinking. To address this need, we have designed, implemented, refined, and studied …


An Unseen Synchrony Or Recurrent Resource Pulse Opportunity? Linking Fisheries With Aeroecology, Henry H. Hansen, Mark Pegg, Matthew Van Den Broeke, Doug Watkinson, Eva C. Enders Jan 2020

An Unseen Synchrony Or Recurrent Resource Pulse Opportunity? Linking Fisheries With Aeroecology, Henry H. Hansen, Mark Pegg, Matthew Van Den Broeke, Doug Watkinson, Eva C. Enders

School of Natural Resources: Faculty Publications

Understanding insect and fish interactions from a spatial and temporal perspec-tive can have implications on large-scale phenology in freshwater systems, yet current information is limited. We employed a novel approach of combining information from acoustic telemetry for six freshwater fish species and weather radar to assess the phenology of mayfly emergence and foraging patterns of freshwater fish. We hypothesized that freshwater fish conduct synchronous movements with annual mayfly hatches as a pulse resource opportunity. Gener-alized additive models were developed to assess movement distance as a func-tion of species and time; before, during, and after annual mayfly hatch events. A cross-section …