Digital Commons Network^™

Evaluation Of Cd109, Pcp4 And Sema3d Genes For Their Association With Ovine Johne’S Disease In Turkish Sheep, Yalçın Yaman, Ramazan Aymaz, Murat Keleş, Veysel Bay, Ecem Hatipoğlu, Cüneyt Kaptan, Atilla Başkurt, Onur Yilmaz, Michael P. Heaton

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Johne’s disease is a chronic, contagious, zoonotic disease that affects numerous species including livestock and sometimes humans. The disease is globally distributed in sheep populations and caused by Mycobacterium avium Subsp. paratuberculosis (MAP). A previous genome-wide association study identified single nucleotide polymorphism (SNP) markers associated with OJD serostatus in CD109, PCP4, and SEMA3D genes. Our aim was to evaluate the same markers for association with OJD seroprevalence in Turkish sheep in a retrospective matched case-control study. The serological status for OJD in 1801 sheep was determined for four native and four composite breeds from three research flocks. One hundred eleven …

Comparison Of Performance Of F1 Romanov Crossbred Ewes With Wool And Hair Breeds During Spring Lambing Under Intensive And Extensive Production Systems, Brad A. Freking, Thomas W. Murphy

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The objective was to evaluate wool (Dorset and Rambouillet) and hair (Dorper, Katahdin, and White Dorper) breeds for their ability to complement Romanov germplasm in two distinct production systems by estimating direct sire and grandsire effects on lamb growth, survival, and ewe productivity traits. Rams of the five breeds (n = 75) were mated to Romanov ewes (n = 459) over a 3-yr period to produce five types of crossbred lambs (n = 2,739). Sire breed (P > 0.06) did not impact body weight or survival traits of the first-generation crossbred (F1) lambs. The productivity of retained crossbred ewes (n = …

Accuracy Of Gebv Of Sires Based On Pooled Allele Frequency Of Their Progeny, Napoleón Vargas Jurado, Larry A. Kuehn, John W. Keele, Ronald M. Lewis

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Despite decreasing genotyping costs, in some cases individually genotyping animals is not economically feasible (e.g., in small ruminants). An alternative is to pool DNA, using the pooled allele frequency (PAF) to garner information on performance. Still, the use of PAF for prediction (estimation of genomic breeding values; GEBVs) has been limited. Two potential sources of error on accuracy of GEBV of sires, obtained from PAF of their progeny themselves lacking pedigree information, were tested: (i) pool construction error (unequal contribution of DNA from animals in pools), and (ii) technical error (variability when reading the array). Pooling design (random, extremes, K-means), …

Development And Validation Of A Neural Network For The Automated Detection Of Horn Flies On Cattle, Eric T. Psota, E. K. Luc, G. M. Pighetti, L. G. Schneider, R. T. Trout Fryxell, J. W. Keele, L. A. Kuehn

Roman L. Hruska U.S. Meat Animal Research Center: Reports

When the number of horn flies that blood feed on cattle exceeds the economic threshold, they can adversely affect the health and wellbeing of their hosts. Excessive horn fly burdens also lead to reduced weight gain and, consequently, diminished profits for livestock producers. Effective management and treatment require reliable surveillance methods for estimating the degree of horn fly burden (i.e., counting the number of flies on cattle). Traditionally, these estimates are obtained through human visual estimation, either in-person or by counting images on a photo; however, these methods are costly both in terms of time and labor and are prone …

Use Of Bedding Materials In Beef Bedded Manure Packs At Hot And Cold Ambient Temperatures: Effects On Odorous Volatile Organic Compounds And Odor Activity Values, Jeff P. Jaderborg, Mindy J. Spiehs, Bryan L. Woodbury, Alfredo Dicostanzo, David B. Parker

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Beef cattle producers are beginning to raise cattle in confinement facilities such as slatted-floor barns, hoop barns, and mono-slope facilities. Hoop and mono-slope facilities typically use bedding packs as part of their manure management system, with crop residues being the most commonly used bedding material. This study was conducted to determine the effects of bedding material, i.e., corn stover (CS), bean stover (BS), wheat straw (WS), or pine wood chips (PC), and environmental ambient temperature, i.e., cold (15°C) or hot (30°C), on the concentrations of odorous volatile organic compounds (VOCs) in air samples collected in the headspace above lab-scale bedded …

Red Imported Fire Ants Reduce Invertebrate Abundance, Richness, And Diversity In Gopher Tortoise Burrows, Deborah M. Epperson, Craig R. Allen, Katharine F. E. Hogan

School of Natural Resources: Faculty Publications

Gopher Tortoise (Gopherus polyphemus) burrows support diverse commensal invertebrate communities that may be of special conservation interest. We investigated the impact of red imported fire ants (Solenopsis invicta) on the invertebrate burrow community at 10 study sites in southern Mis- sissippi, sampling burrows (1998–2000) before and after bait treatments to reduce fire ant populations. We sampled invertebrates using an ant bait attractant for ants and burrow vacuums for the broader invertebrate community and calculated fire ant abundance, invertebrate abundance, species richness, and species diversity. Fire ant abundance in gopher tortoise burrows was reduced by >98% in treated sites. There was …

Is Hay For The Birds? Investigating Landowner Willingness To Time Hay Harvests For Grassland Bird Conservation, Matthew P. Gruntorad, Katherine A. Graham, Nico Arcilla, Christopher J. Chizinski

School of Natural Resources: Faculty Publications

Birds in agricultural environments have exhibited steep global population declines in recent decades, and effective conservation strategies targeting their populations are urgently needed. In grasslands used for hay production, breeding birds’ nest success improves substantially if hay harvests are delayed until after mid-July. However, few studies have investigated private hay producers’ willingness to alter their harvesting practices to support bird conservation, a critical factor for bird conservation where most land is privately owned, such as in the North American Great Plains. We surveyed Nebraska hay producers to examine whether livestock production, wildlife knowledge, and hunting activity affects their willingness to …

Tracking Spatial Regimes As An Early Warning For A Species Of Conservation Concern, C.P. Roberts, D.R. Uden, S.M. Cady, B.W. Allred, S.D. Fuhlendorf, M.O. Jones, J.D. Maestas, D.E. Naugle, A.C. Olsen, J. Smith, J. Tack, D. Twidwell

School of Natural Resources: Faculty Publications

No abstract provided.

Challenges And Opportunities For Agroforestry Practitioners To Participate In State Preferential Property Tax Programs For Agriculture And Forestry, Stephanie Chizmar, Rajan Parajuli, Gregory E. Frey, Robert E. Bardon, Robert Andrew Branan, Katherine Macfarland, Matthew Smith, Lord Ameyaw

School of Natural Resources: Faculty Publications

All 50 states offer preferential property tax programs that lower the taxes paid on enrolled agricultural and/or forest lands. While agroforestry is a land-use that combines elements of both agriculture and forestry, eligibility criteria and other rules and regulations may prevent landowners from enrolling agroforestry practices in one or more of the agricultural and forestry tax programs. This pilot-scale study developed conceptual and methodological frameworks to identify the current barriers to and opportunities in preferential tax policies applicable to agroforestry practices. We conducted an extensive review of state preferential property tax programs relevant for agroforestry practices, following focus group discussions …

Big Cats In The Big City: Spatial Ecology Of Mountain Lions In Greater Los Angeles, S. P. Riley, J. A. Sikich, J. F. Benson

School of Natural Resources: Faculty Publications

No abstract provided.

Harnessing The Neon Data Revolution To Advance Open Environmental Science With Diverse And Data-Capable Community, R. C. Nagy, J. Corman Et Al.

School of Natural Resources: Faculty Publications

No abstract provided.

Multi-Feature Data Repository Development And Analytics For Image Cosegmentation In High-Throughput Plant Phenotyping, R. Quinones, F. Munoz-Arriola, S. Das Choudhury, A. Samal

School of Natural Resources: Faculty Publications

No abstract provided.

Whooping Crane (Grus Americana) Family Consumes A Diversity Of Aquatic Vertebrates During Fall Migration Stopover At The Platte River, Nebraska, Andrew J. Caven, Keith D. Koupal, David M. Baasch, Emma M. Brinley Buckley, Jenna M. Malzahn, Michael David Forsberg, Mariah Lundgren

School of Natural Resources: Faculty Publications

The Aransas-Wood Buffalo population of Whooping Cranes (Grus americana) migrates approximately 4000 km through the central Great Plains biannually, between their breeding and wintering grounds. Whooping Cranes depend on stopover sites to provide secure resting locations and the caloric resources necessary to complete their migration, such as the USFWS-designated critical habitat area in the Central Platte River Valley (CPRV) of Nebraska. This area includes braided river habitat characterized by low-elevation and submerged sandbars, which provide important roosting and foraging opportunities for migrating Whooping Cranes. We used long-range photography, videography, and behavioral scan sampling to document forage items consumed by Whooping …

Minimizing Trade-Offs For Sustainable Irrigation, S. Mcdermid, R. Mahmood, M. J. Hayes, J. Bell, Z. Lieberman

School of Natural Resources: Faculty Publications

No abstract provided.

Patterns In Spatial Use And Movement Of Silver Carp Among Tributaries And Main-Stem Rivers: Insight From Otolith Microchemistry Analysis, J. P. Werner, Q. J. Dean, M. A. Pegg, M. J. Hamel

School of Natural Resources: Faculty Publications

No abstract provided.

Juvenile Chinook Salmon Use Of Sandbar Willows In A Large-Scale, Simulated Riparian Floodplain: Microhabitat And Energetics, N. A. Fangue, D. E. Cocherell, F. Mauduit, J. Poletto, K. Carr, T. A. O'Rear, G. Soyster, S. Lorenzato, J. Carlon, M. L. Kavvas, Cech, J. Joseph Jr.

School of Natural Resources: Faculty Publications

No abstract provided.

Feeding Ecology Of Walia Ibex (Capra Walie) In Simien Mountains National Park, Ethiopia, D. Ejigu, A. Bekele, L. A. Powell

School of Natural Resources: Faculty Publications

No abstract provided.

Tag Type And Location-Dependent Retention Impart Varied Levels Of Bias On Mark–Recapture Parameter Estimates, Douglas L. Zentner, Jonathan J. Spurgeon, Steve E. Lochmann, Christy L. Graham

School of Natural Resources: Faculty Publications

Population parameter estimates from mark–recapture studies are dependent on individuals retaining marks or tags. Therefore, tag retention estimates are needed for different tag types and anatomical tagging locations. Few studies have empirically quantified the bias from tag retention on fish population parameters that are derived from mark–recapture studies. We examined differences in retention between T-bar anchor tags and PIT tags as well as among four anatomical locations for PIT tags in Brown Trout Salmo trutta in a tailwater fishery in Arkansas, USA. We also estimated the relative bias of tag type and PIT tag location on apparent survival estimates from …

Sarcocystis Neurona Transmission From Opossums To Marine Mammals In The Pacific Northwest, A. M. O'Byrne, D. M. Lambourn, D. Rejmanek, K. Haman, E. Vanwormer, K. Shapiro

School of Natural Resources: Faculty Publications

No abstract provided.

Development Of A Multiplex Real-Time Pcr Assay For Predicting Macrolide And Tetracycline Resistance Associated With Bacterial Pathogens Of Bovine Respiratory Disease, Enakshy Dutta, John Loy, Caitlyn A. Deal, Emily L. Wynn, Michael L. Clawson, Jennifer Clarke, Bing Wang

Department of Statistics: Faculty Publications

Antimicrobial resistance (AMR) in bovine respiratory disease (BRD) is an emerging concern that may threaten both animal and public health. Rapid and accurate detection of AMR is essential for prudent drug therapy selection during BRD outbreaks. This study aimed to develop a multiplex quantitative real-time polymerase chain reaction assay (qPCR) to provide culture-independent information regarding the phenotypic AMR status of BRD cases and an alternative to the gold-standard, culture-dependent test. Bovine clinical samples (297 lung and 111 nasal) collected in Nebraska were subjected to qPCR quantification of macrolide (MAC) and tetracycline (TET) resistance genes and gold-standard determinations of AMR of …

Bioscatter Transport By Tropical Cyclones: Insights From 10 Years In The Atlantic Basin, Matthew S. Van Den Broeke

Department of Earth and Atmospheric Sciences: Faculty Publications

Tropical cyclones (TCs) can transport birds and insects near their center of circulation. In this study, we examined the maximum altitude, area and density of the radar-derived bioscatter signature across a set of 42 TC centers of circulation sampled from 2011 to 2020. All TC events contained at least one time when a bioscatter signature was present. More intense hurricanes with closed eyes typically had taller and denser bioscatter signatures, and sometimes larger areas dominated by bioscatter. This indicated a larger number of organisms within the circulation of more intense hurricanes, supporting the speculation that those storms were most likely …

Healthy Nebraska: Advancing Human Health And Developing Healthy Communities, Laura E. Young, Mary Garbacz, Kelli Mashino, Michael J. Boehm, Amanda Ramer-Tait, Jessica Rudolph, Heather Rasmussen, Abigail Durheim, Kaustav Majumder, Taryn Sehnert, Dipti Dev, Krista Ott, Martha Rhoades, Morgan Leefers, Richard Wilson, Mya Donelson, James Schnable, Brent Lemmer, Virginia Chaidez, Rebecca Reagan, Helen Fagan, Bailee Tucker, Jean Ann Fischer, Molly Suhr

Strategic Discussions for Nebraska

Healthy Nebraska: Advancing Human Health and Developing Healthy Communities

Every day, the Institute of Agriculture and Natural Resources (IANR) is putting together a wickedly complex puzzle, in which each faculty member, researcher, Extension educator, student, staff member, partner and stakeholder is a vitally important piece. As the pieces come together, we see a picture of the world in which IANR is making a meaningful difference in sustainable food, fuel, feed, and fiber production.

Wpa News 116 (2021), World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Newsletters

WPA News (Winter 2021), number 116

Published by the World Pheasant Association

Archaeobiogeography Of Extinct Rice Rats (Oryzomyini) In The Lesser Antilles During The Ceramic Age (500 Bce–1500 Ce), Marine Durocher, Violaine Nicolas, Sophia Perdikaris, Dominique Bonnissent, Gwenola Robert, Karyne Debue, Allowen Evin, Sandrine Grouard

School of Global Integrative Studies: Faculty Publications

During the Ceramic Age (500 BCE–1500 CE), Lesser Antilles rice rats (tribe Oryzomyini) made up a significant portion of the diet of Caribbean islanders. Archaeological excavations across the archipelago resulted to the discovery of large quantities of remains from to these now extinct taxa. It offers a unique opportunity to investigate the past biogeography of this taxon of high cultural and ecological importance. We have studied 1,140 first lower molars originating from 40 archaeological sites across eleven islands of the Lesser Antilles archipelago using two-dimensional geometric morphometric approaches to establish spatiotemporal pat-terns relying on phenotypic variations. This study identified three …

Critical Decision Dates For Drought Management In Central And Northern Great Plains Rangelands, A. J. Smart, K. Hamoney, J. D. Scasta, M. Stephenson, J. Volesky, L. T. Vermeire, J. C. Mosley, K. Sedivec, M. Meehan, T. Haigh Et Al.

School of Natural Resources: Faculty Publications

No abstract provided.

Association Of Tlr2 Haplotypes Encoding Q650 With Reduced Susceptibility To Ovine Johne’S Disease Inturkish Sheep, Yalcin Yaman, Ramazan Aymaz, Murat Keles, Veysel Bay, Cemal Un, Michael P. Heaton

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Ovine Johne’s disease (OJD) is caused by Mycobacterium avium subsp. paratuberculosis (MAP) and carries a potential zoonotic risk for humans. Selective breeding strategies for reduced OJD susceptibility would be welcome tools in disease eradication efforts, if available. The Toll-like receptor 2 gene (TLR2) plays an important signaling role in immune response to MAP, and missense variants are associated with mycobacterial infections in mammals. Our aim was to identify and evaluate ovine TLR2 missense variants for association with OJD in Turkish sheep. Eleven TLR2 missense variants and 17 haplotype configurations were identified in genomic sequences of 221 sheep from 61 globally …

Genetic Changes In Beef Cow Traits Following Selection For Calving Ease, Gary L. Bennett, Richard M. Thallman, Warren M. Snelling, John W. Keele, Harvey C. Freetly, Larry A. Kuehn

Roman L. Hruska U.S. Meat Animal Research Center: Reports

One approach to reducing calving difficulty is to select heifers with higher breeding value for calving ease. Calving ease is often associated with lower birth weight and that may result in other possible effects on lifetime productivity. Females from experimental select and control calving ease lines within each of the seven populations were compared. Random samples of 720 heifers from lines selected for better calving ease breeding values and 190 heifers from control lines selected for average birth weights were followed through four parities. Select and control lines within the same population were selected to achieve similar yearling weight breeding …

Comparison Of Performance Of F1 Romanov Crossbred Ewes With Wool And Hair Breeds During Fall Lambing And Body Weight And Longevity Through Six Production Years, Thomas W. Murphy, Brad A. Freking

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The objective of this study was to evaluate wool (Dorset and Rambouillet) and hair (Dorper, Katahdin, and White Dorper) breeds for their ability to complement Romanov germplasm in an annual fall lambing system by estimating direct maternal grandsire and sire breed effects on economically important lamb and ewe traits. After 3 yr of evaluation under spring lambing, ewes of the five F1 types were transitioned to spring mating, exposed to composite terminal sires, and evaluated under a barn lambing system at 4, 5, and 6 yr of age. A total of 527 first generation crossbred (F1) ewes produced 1,151 litters …

Environmental Conditions And Gas Concentrations In Deep-Pit Finishing Cattle Facilities: A Descriptive Study, Erin L. Cortus, Brian P. Hetchler, Mindy J. Spiehs, Warren Rusche

Roman L. Hruska U.S. Meat Animal Research Center: Reports

There is a lack of data to describe the range of environmental and air quality conditions in beef cattle confinement buildings with deep-pit manure storage. The objective of this article is to describe the environmental conditions, manure nutrient concentrations, and aerial gas concentrations for three deep-pit manure storage finishing beef cattle facilities and varying weather conditions. Measurements were collected from three barns finishing beef cattle with deep pits in Minnesota on three sampling days per barn in summer, fall, and spring weather conditions. The air temperatures throughout the barns closely mirrored the ambient temperature conditions, although significantly lower temperatures were …

Research At Nebraska, 2020-2021 Report, University Of Nebraska-Lincoln

Office of Research and Economic Development: Publications

This publication is a snapshot of the fiscal year’s activities. To read more stories about research and creativity at Nebraska, visit the online edition at https://research.unl.edu/annualreport/2021. Additional multimedia are available for many stories.