Digital Commons Network^™

Rice Chalky Grain 5 Regulates Natural Variation For Grain Quality Under Heat Stress, Anil Kumar Nalini Chandran, Jaspreet Sandhu, Larissa Irvin, Puneet Paul, Balpreet K. Dhatt, Waseem Hussain, Tian Gao, Paul E. Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Heat stress occurring during rice (Oryza sativa) grain development reduces grain quality, which often manifests as increased grain chalkiness. Although the impact of heat stress on grain yield is well-studied, the genetic basis of rice grain quality under heat stress is less explored as quantifying grain quality is less tractable than grain yield. To address this, we used an image-based colorimetric assay (Red, R; and Green, G) for genome-wide association analysis to identify genetic loci underlying the phenotypic variation in rice grains exposed to heat stress. We found the R to G pixel ratio (RG) derived from mature …

Agronomic And Quality Impact Of A Shortened Translocation For Wheat Streak Mosaic Virus Resistance, Mary J. Guttieri, Robert L. Bowden, Guorong Zhang, Scott Haley, Katherine Anna Frels, Gary L. Hein, Katherine W. Jordan

Department of Agronomy and Horticulture: Faculty Publications

Wheat streak mosaic virus (WSMV) is a mite-vectored virus with substantial economic impact on wheat production. One of the effective sources of resistance to WSMV, Wsm1, is carried on a translocation from Thinopyrum intermedium. The original whole arm form of this translocation (T4DL·4JsS) was highly effective against WSMV but carried a substantial yield penalty in the absence of the virus. Shorter recombinants of the Th. intermedium translocation are now available. This study characterized the agronomic performance of near-isogenic sib-pair families in 10 yield trials using one of these shortened T4DL·4DS-4J^sS translocations, named “rec213,” in the absence …

The Genomic And Bulked Segregant Analysis Of Curcuma Alismatifolia Revealed Its Diverse Bract Pigmentation, Xuezhu Liao, Yuanjun Ye, Xiaoni Zhang, Dan Peng, Mengmeng Hou, Gaofei Fu, Jianjun Tan, Jianli Zhao, Rihong Jiang, Yechun Xu, Jinmei Liu, Jinliang Yang, Wusheng Liu, Luke R. Tembrock, Genfa Zhu, Zhiqiang Wu

Department of Agronomy and Horticulture: Faculty Publications

Compared with most flowers where the showy part comprises specialized leaves (petals) directly subtending the reproductive structures, most Zingiberaceae species produce showy ‘‘flowers’’ through modifications of leaves (bracts) subtending the true flowers throughout an inflorescence. Curcuma alismatifolia, belonging to the Zingiberaceae family, a plant species originating from Southeast Asia, has become increasingly popular in the flower market worldwide because of its varied and esthetically pleasing bracts produced in different cultivars. Here, we present the chromosome-scale genome assembly of C. alismatifolia ‘‘Chiang Mai Pink’’ and explore the underlying mechanisms of bract pigmentation. Comparative genomic analysis revealed C. alismatifolia contains a …

The Emergence Of Convergence, Shana M. Sundstrom, David G. Angeler, Jessica G. Ernakovich, Jorge H. Garcıá, Joseph A. Hamm, Orville Huntington, Craig R. Allen

School of Natural Resources: Faculty Publications

Science is increasingly a collaborative pursuit. Although the modern scientific enterprise owes much to individuals working at the core of their field, humanity is increasingly confronted by highly complex problems that require the integration of a variety of disciplinary and methodological expertise. In 2016, the U.S. National Science Foundation launched an initiative prioritizing support for convergence research as a means of “solving vexing research problems, in particular, complex problems focusing on societal needs.” We discuss our understanding of the objectives of convergence research and describe in detail the conditions and processes likely to generate successful convergence research. We use our …

Comparative Analysis Of Untargetedmetabolomics In Tolerant And Sensitive Genotypes Of Common Bean (Phaseolus Vulgaris L.) Seeds Exposed To Terminal Drought Stress, Mayavan Subramani, Carlos Urrea, Venu Kalavacharla

Panhandle Research and Extension Center

Many environmental stresses can affect the accumulation of metabolites in plants, including drought. In the present study, we found a great deal of variability in the seed metabolic profiles of the tolerant (Matterhorn, SB-DT2 and SB-DT3) common bean genotypes in comparison to the sensitive genotypes (Sawtooth, Merlot and Stampede) using ultrahigh performance liquid chromatography􀀀tandem mass spectrometry (UPLC-MS). The genotypes were grown in the field and subjected to drought stress after flowering (terminal drought stress). We aimed to investigate the accumulation of genotype-specific metabolites and related pathways under terminal drought stress by comparing tolerant and sensitive genotypes within a race. A …

Morphometric And Molecular Characterization Of An Unpigmented Haemosporidian Parasite In The Neotropical Turnip-Tailed Gecko (Thecadactylus Rapicauda), Nubia E. Matta, Leydy P. González, Mario Vargas-Ramírez, Gediminas Valkiūnas, Ananias A. Escalante, M. Andreína Pacheco

Harold W. Manter Laboratory of Parasitology: Library Materials

Morphological traits from blood stages have been the gold standard for determining haemosporidian parasite species. However, the status of some taxa and the value of such traits in parasites from reptiles remain contentious. The scarce sampling of these species worsens the situation, and several taxa lack molecular data. A survey was performed in the Magdalena Department in Colombia, where 16 species of reptiles were captured. A peculiar haemosporidian parasite was found in the Turnip-tailed gecko Thecadactylus rapicauda. This haemosporidian does not show malarial pigment in blood stages under light microscopy; thus, it fits the Garnia genus’s characters belonging to …

Employing Respondent Driven Sampling (Rds) To Recruit People Who Inject Drugs (Pwid) And Other Hard-To-Reach Populations During Covid-19: Lessons Learned, Roberto Abadie, Patrick Habecker, Kimberly Gocchi Carrasco, Kathy S. Chiou, Samodha C. Fernando, Sydney Townsend, Aníbal Valentin-Acevedo, Kirk Dombrowski, John T. West, Charles Wood

School of Global Integrative Studies: Faculty Publications

Background: Respondent Driven Sampling (RDS) is an effective sampling strategy to recruit hard-to-reach populations but the impact of the COVID-19 pandemic on the use of this strategy in the collection of data involving human subjects, particularly among marginalized and vulnerable populations, is not known. Based on an ongoing study using RDS to recruit and study the interactions between HIV infection, injection drug use, and the microbiome in Puerto Rico, this paper explores the e􀀀ectiveness of RDS during the pandemic and provided potential strategies that could improve recruitment and data collection.

Results: RDS was employed to evaluate its effectiveness …

Nefdc Conference Program, Fall 2022, New England Faculty Development Consortium

New England Faculty Development Consortium Conference Programs

New England Faculty Development Consortium Conference Program, Fall 2022

Theme: Authentic Learning: Developing Students as Independent Thinkers

Friday, October 21, 2022 Hogan Center, College of the Holy Cross Worcester, Massachusetts

Conference Chairs: Eric Matte, Landmark College and Jackie Boivin, Bridgewater State University

Conference Proposal Chairs: Kellie Deys, Nichols College and Kim Burns, Dr. Kim Burns Coaching and Consulting

Keynote Speaker: Dr. José Antonio Bowen, Teaching Change with the New 3Rs

Upcoming NEFDC Opportunities: Spring 2023 Virtual Brown Bag Workshop Series and the Exchange Call for Submissions

Conference At-a-Glance

Open Mic

Poster Descriptions

Concurrent Session 1 – 55 Min. Interactive Session …

2022 Academic Program Review

School of Natural Resources: Documents and Reviews

No abstract provided.

Blanket Statements, Issue 155, Fall 2022

Blanket Statements: News Publication of the American Quilt Study Group

Blanket Statements, Issue 155, Fall 2022

Fish & Wildlife News: Fall 2022, Matt Trott

Fish and Wildlife News

No abstract provided.

The Casnr L.I.N.K.S. Newsletter: Learning Innovation Network For K-12 Schools, Edition 9, October 2022, Bailey Feit, Tammy Mittelstet

CASNR L.I.N.K.S. Newsletter

The purpose of this L.I.N.K.S. newsletter is to provide a monthly update of opportunities and resources for K-12 schools to connect with the University of Nebraska's CASNR Food, Energy, Water, and Societal Systems (FEWS²) programs and partners.

Included in this edition:

K-12 Partners website is live

Curriculum and classroom resources for all levels

Eye on curriculum and resources

Idena Nebraska Ag Expo career exploration event

Teacher opportunities

Link to list of new partnerships

Ask an expert

Students experiences: Student internship opportunities with USDA NRCS and Scholarships available

Eye on CASR research: Commodity marketing for high school students

Send your students …

Gsl Researcher (Fall 2022)

GSL Researcher

GSL Researcher (Fall 2022)

Greetings

Students

Range and pasture update

Technical note

Ranch update

Highlighted research

GSL Open House agenda

GSL spotlight

Nebline, October 2022

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

4-H Youth Thrive at Super Fair With Community Support

Apples by Nebraska Extension Staff and Interns

Recipes of the Month: Crunchy Apple Roll and Easy Apple Salad by Kayla Colgrove

Fall Watering Aids Tree & Shrub Health by Sarah Browning

Garden Guide: Things to Do This Month

Maintaining Your Septic System by Becky Schuerman

A Wasp in Disguise: The Velvet Ant by Kait Chapman

4-H’ers Test Family and Consumer Science Skills at Life Challenge

4-H’ers Test Their Knowledge of Animals and Decision-Making Skills at PASE

4-H Announcements for 4-H'ers and Volunteers

Heart of 4-H Volunteer Award: Capital City Horse and …

Timber Rattlesnake (Crotalus Horridus): A Species Conservation Assessment For The Nebraska Natural Legacy Project, Melissa J. Panella, Dan Fogell, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in the development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the timber rattlesnake (Crotalus horridus) as a Tier 1 at-risk species. Provided here are general management recommendations regarding timber rattlesnakes. Conservation practitioners will need to use their professional judgment for management decisions based on objectives, location, and site-specific conditions. Based on the body of literature and available data, this species conservation assessment provides an overview of our current knowledge of timber …

Glutathione And Glutaredoxin In Redox Regulation And Cell Signaling Of The Lens, Marjorie F. Lou

School of Veterinary and Biomedical Sciences: Faculty Publications

The ocular lens has a very high content of the antioxidant glutathione (GSH) and the enzymes that can recycle its oxidized form, glutathione disulfide (GSSG), for further use. It can be synthesized in the lens and, in part, transported from the neighboring anterior aqueous humor and posterior vitreous body. GSH is known to protect the thiols of the structural lens crystallin proteins from oxidation by reactive oxygen species (ROS) so the lens can maintain its transparency for proper visual function. Age-related lens opacity or senile cataract is the major visual impairment in the general population, and its cause is closely …

Water Current, Volume 54, No. 2, Fall 2022

Water Current Newsletter

Fall Harvest: Research, News and More from the Nebraska Water Center

Droughtscape, Fall 2022, National Drought Mitigation Center

DroughtScape: Quarterly Newsletter of the National Drought Mitigation Center (2007–2023)

DroughtScape, Fall 2022

Landscape Change, Scale, And Human Response To Change In The Great Plains, Kate Bird

School of Natural Resources: Dissertations, Theses, and Student Research

Great Plains landscapes are undergoing changes at multiple spatial and temporal scales due to processes ranging from woody encroachment to climate change. These changes may fundamentally alter the agroecosystems of the Great Plains such that the provisioning of ecosystem services including biodiversity and livestock production is affected. Improving our understanding of the effects of landscape change at multiple scales and how humans perceive and respond to these changes is important for facilitating research and management that enhances the resilience of these agroecosystems. As such, I first applied discontinuity theory and graph theory to evaluate the functional connectivity of the Central …

Intestinal Parasite Prevalence In Fecal Samples In Nebraska Dog Parks, Kristianna Muller

Honors Program: Senior Projects (Public)

From February to April 2022, fecal samples were collected from eight dog parks in the Omaha and Lincoln, NE areas. A total of 160 samples were collected and assessed for the presence of intestinal parasites. The zinc sulfate double centrifugal flotation technique was used to determine infection. Out of the 160 samples, ten were positive for parasite contamination (6.25% prevalence). The most observed parasites were hookworms, found in 3.75% of all samples (6/160). Cystoisospora, Giardia, Toxocara canis, and Toxascaris leonina were all found only once, for a prevalence of 0.625% each. Compared to other studies, our infection …

The Freedom Collection 2017–2021: Part 1, The Composition Of The Freedom Collection And Uncl’S Downloads By Member And Subject, David C. Tyler

University of Nebraska-Lincoln Libraries: White Papers

With data provided by a colleague, the author looked at the University of Nebraska Consortium of Libraries (UNCL) downloading activity of Elsevier's Freedom Collection for the 2017-2021 interval. Members include the University of Nebraska at Kearney, University of Nebraska-Lincoln, University of Nebraska Medical Center, and University of Nebraska Omaha.

The author looked at activity by member and by subject at the level of journals' Library of Congress Classifications.

This report was submitted in the fall of 2022 to the UNL Libraries Collections Strategies Committee (CSC) and to the members of the Collections Strategies and Open Scholarship (CSOS) department.

The Role Of Intertemporal Preferences, Active Consideration Of Health Outcomes, And Simple Health Prompts On The Nutritional Quality Of Food Choices, Olivier Tuyizere

Department of Agricultural Economics: Dissertations, Theses, and Student Research

This thesis consists of three chapters. The first chapter introduces the thesis by highlighting a brief review of intertemporal preferences, active consideration of health outcomes, and health prompts during food choices. The introduction paves the way for the following two chapters, which are related, but stand-alone papers.

In the second chapter, we explore a novel question: how does actively considering health outcomes (both current and future) during decision-making affect the nutritional quality of food choices? We explore this question with an online experiment on food choices. Our findings show that active consideration of health outcomes leads to choosing products with …

A Strategic Audit Of Hasbro, William Weiner, Amanda Fuechtmann, Avery Smith, Michaela Webb, Zach Buhman

Honors Program: Senior Projects (Public)

This strategic audit dives into ten components of Hasbro’s strategic management. The first component discusses Hasbro’s history and current strategic leadership. This is followed by an analysis of the impacts of its external and internal environment. Next, the audit examines Hasbro’s recent performance and competition it faces in the Toy Wholesaling industry. The sixth, seventh, and eighth components consider different levels of strategy that Hasbro pursues. Lastly, the strategic audit considers Hasbro’s corporate governance and its organizational structure and controls.

Overall, we conclude that Hasbro is a mature company in a slow-growing industry. Its ability to translate its iconic and …

Engaging Children With Animals Increases Their Awareness Of Their Footprint On Earth, Brett Foster

Honors Program: Senior Projects (Public)

Teachers should reserve time in their classrooms to connect curriculum to animals and environmental topics. Connecting core subjects like writing, reading, or even math to animals builds student investment in learning as they can connect the topics of animals to their lives. Animals are all around us and are a topic that students naturally spend a lot of time with and can easily identify in the world around them. There are several benefits of incorporating animals into the curriculum, including an increased sense of empathy, an awareness of their environmental impact, and an investment in their community.

I have focused …

Seasonal Habitat Selection By American White Pelicans, Frederick L. Cunningham, Guiming Wang, D. Tommy King

United States Department of Agriculture Wildlife Services: Staff Publications

Resource utilization strategies of avian migrants are a major concern for conservation and management. Understanding seasonal habitat selection by migratory birds helps us explain the ongoing continental declines of migratory bird populations. Our objective was to compare the secondorder and third-order habitat selection by the American White Pelican (Pelecanus erythrorhynchos; hereafter pelican) between the breeding and non-breeding grounds. We tested the Lack hypothesis that habitat selection by migratory birds is stronger on the breeding grounds than on the nonbreeding grounds. We used random-effect Dirichlet-multinomial models to estimate the second-order habitat selection between the seasons with the GPS locations …

Effects Of Early‑Life Experience On Innovation And Problem‑Solving In Captive Coyotes, Andrew C. Garcia, Mitchell A. Parsons, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Early-life experience often shapes behaviors like innovation and exploration. These behaviors are important to animals encountering novel food resources in diverse habitats, such as mesocarnivores in urban areas. To understand if early-life experiences impact later-life behavior, we examined how coyotes (Canis latrans) responded to a multi-access puzzle box at two life stages: pup (~ 7 weeks) and dispersal (~ 10 months). We first exposed pups, still living with their parents and littermates, to a baited puzzle box. At dispersal age, we again tested both these pups and an age-matched control group that was not exposed to the puzzle …

Recent Emergence Of Bovine Coronavirus Variants With Mutations In The Hemagglutinin-Esterase Receptor Binding Domain In U.S. Cattle, Aspen M. Workman, Tara G. Mcdaneld, Gregory P. Harhay, Subha Das, John Dustin Loy, Benjamin M. Hause

School of Veterinary and Biomedical Sciences: Faculty Publications

Bovine coronavirus (BCoV) has spilled over to many species, including humans, where the host range variant coronavirus OC43 is endemic. The balance of the opposing activities of the surface spike (S) and hemagglutinin-esterase (HE) glycoproteins controls BCoV avidity, which is critical for interspecies transmission and host adaptation. Here, 78 genomes were sequenced directly from clinical samples collected between 2013 and 2022 from cattle in 12 states, primarily in the Midwestern U.S. Relatively little genetic diversity was observed, with genomes having >98% nucleotide identity. Eleven isolates collected between 2020 and 2022 from four states (Nebraska, Colorado, California, and Wisconsin) contained a …

Recent Emergence Of Bovine Coronavirus Variants With Mutations In The Hemagglutinin-Esterase Receptor Binding Domain In U.S. Cattle, Aspen M. Workman, Tara G. Mcdaneld, Gregory P. Harhay, Subha Das, John Dustin Loy, Benjamin M. Hause

School of Veterinary and Biomedical Sciences: Faculty Publications

Bovine coronavirus (BCoV) has spilled over to many species, including humans, where the host range variant coronavirus OC43 is endemic. The balance of the opposing activities of the surface spike (S) and hemagglutinin-esterase (HE) glycoproteins controls BCoV avidity, which is critical for interspecies transmission and host adaptation. Here, 78 genomes were sequenced directly from clinical samples collected between 2013 and 2022 from cattle in 12 states, primarily in the Midwestern U.S. Relatively little genetic diversity was observed, with genomes having >98% nucleotide identity. Eleven isolates collected between 2020 and 2022 from four states (Nebraska, Colorado, California, and Wisconsin) contained a …

Editorial: C. Elegans Hostmicrobiome Interactions: From Medical To Ecological And Evolutionary Model, Michael A. Herman, Javier E. Irazoqui, Buck S. Samuel, Nic Vega

School of Biological Sciences: Faculty Publications

No abstract provided.

Editorial: C. Elegans Host-Microbiome Interactions: From Medical To Ecological And Evolutionary Model, Michael A. Herman, Javier E. Irazoqui, Buck S. Samuel, Nic Vega

School of Biological Sciences: Faculty Publications

Microbiomes often form specific functional associations with their hosts. Correlations between microbiome membership and states of host health and disease abound in many systems. However, there are few systems that allow for in depth functional studies that include precise manipulation and interrogation of both microbiome composition and host function. Recently the nematode Caenorhabditis elegans - an excellent genetic model organism for studying many fields of biology, including neurobiology and behavior, development, cell biology, and innate immunity - has proven to be a robust system to probe microbiome interactions and their effect on host physiology.