Digital Commons Network^™

Incorporating Crash Severity And Continuous Improvement Of Shift, Reginald Souleyrette, Riana Tanzen, Teng Wang

Kentucky Transportation Center Research Report

The Strategic Highway Investment Formula for Tomorrow (SHIFT) is the Kentucky Transportation Cabinet's data-informed approach for comparing capital improvement projects and prioritizing limited transportation funds. SHIFT 2022 incorporates advancements in methods and flexibility. This project revises the SHIFT crash data safety metric. The crash data safety metric from the previous version of SHIFT was excess expected crashes (EECs). It is computed using the total number of crashes of all severities. Locations with a higher proportion of severe (fatal and injury) crashes received the same weight as locations with an equal number of property damage only crashes. This project redefines the …

Identification Of A Nacc1-Regulated Gene Signature Implicated In The Features Of Triple-Negative Breast Cancer, Chrispus Ngule, Hami Hemati, Xingcong Ren, Oluwafunminiyi Obaleye, Amos O. Akinyemi, Felix Oyelami, Xiaofang Xiong, Jianxun Song, Xia Liu, Jin-Ming Yang

Markey Cancer Center Faculty Publications

Triple-negative breast cancer (TNBC), characterized by a deficiency in estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor2 (HER2), is among the most lethal subtypes of breast cancer (BC). Nevertheless, the molecular determinants that contribute to its malignant phenotypes such as tumor heterogeneity and therapy resistance, remain elusive. In this study, we sought to identify the stemness-associated genes involved in TNBC progression. Using bioinformatics approaches, we found 55 up- and 9 downregulated genes in TNBC. Out of the 55 upregulated genes, a 5 gene-signature (CDK1, EZH2, CCNB1, CCNA2, and AURKA) involved in cell regeneration was positively correlated …

Screening Of Perennial Grasses And A Mutant Maize Collection By Fourier-Transformed Infrared (Ftir) Spectroscopy For Improved Biofuel Traits, S. C. Thain, P. Morris, S. Hawkins, C. Morris, I. S. Donnison

IGC Proceedings (1977-2023)

Currently the potential of biomass crops, including grasses, is limited because most species have not been bred for this purpose. However traits such as lignification, phenolic cross-linking and carbohydrate accessibility, which are also important for nutritive quality in forage grasses, can affect potential biofuel quality in applications such as combustion, fast-pyrolysis or fermentation. A collection of Lolium and Festuca species known to exhibit a range of lignin, cell wall phenolic and carbohydrate concentrations have been used to test optimum characteristics for biofuel processing. This collection formed a “calibration” set for subsequent high through-put FTIR chemical screening of additional plant lines: …

Screening Genes For Association With Loci For Nitrogen-Use Efficiency In Perennial Ryegrass By PyrosequencingTm, O. Dolstra, D. Dees, J. -D. Driesprong, E. N. Van Loo

IGC Proceedings (1977-2023)

The application of marker-assisted selection to improve quantitative traits in perennial ryegrass (Lolium perenne) is cumbersome. It requires a priori knowledge on the association of markers and genes. The knowledge on the chromosomal location of major genes for quantitative traits as well as on gene sequences is rapidly growing. However, determination of the genetic constitution of parents prior to their use in breeding still is impractical. More realistic is to collect association data along with the testing activities needed for breeding new varieties. This study uses changes in allele frequency due to selection as a criterion for gene-trait …

Microcystin-Lr Removal From Water Via Enzymatic Linearization And Ultrafiltration, Abelline Fionah, Cannon Hackett, Hazim Aljewari, Laura Brady, Faisal Alqhtani, Isabel C. Escobar, Audie K. Thompson

Chemistry Faculty Publications

Microcystin-LR (MC-LR) is a toxin produced by cyanobacteria that can bloom in freshwater supplies. This study describes a new strategy for remediation of MC-LR that combines linearization of the toxin using microcystinase A, MlrA, enzyme with rejection of linearized byproducts using membrane filtration. The MlrA enzyme was expressed in Escherichia coli (E. coli) and purified via a His-tag with 95% purity. Additionally, composite membranes made of 95% polysulfone and 5% sulfonated polyether ether ketone (SPEEK) were fabricated and used to filter a solution containing cyclic and linearized MC-LR. Tests were also performed to measure the adsorption and desorption of MC-LR …

A Computational Pipeline For The Development Of Comparative Anchor Tagged Sequence (Cats) Markers, J. Schauser, J. Fredslund, L. Heegaard Madsen, Niels Sandal, Jens Stougaard

IGC Proceedings (1977-2023)

Key points:

1. Molecular markers that allow the transfer of map information from one species to another are vital in comparative genetics.
2. To identify potential anchor marker sequences more efficiently, we have established a bioinformatic pipeline that combines multi-species EST- and genome- sequence data.
3. Taking advantage of information from a few related species, comparative EST sequence analysis identifies evolutionary conserved sequences in less well-characterised species in the same family.
4. Alignment of evolutionary conserved EST sequences with corresponding genomic sequences defines sets of PCR primer sites flanking introns.
5. Markers identified by this procedure will be readily transferable to other species since they …

Application Of Molecular Markers In Genetic Resources Management Of Perennial Ryegrass, R. Van Treuren

IGC Proceedings (1977-2023)

Key points

1. Molecular markers are effective tools to support traditional approaches in plant genetic resources management.
2. Genetic diversity assessed for perennial ryegrass by AFLP analysis revealed differentiation of populations occurring in traditional Dutch grasslands from commercial varieties, but not from populations occurring in Dutch nature reserves.
3. No specific conservation measures were recommended to maintain the genetic diversity of perennial ryegrass occurring in traditional Dutch grasslands.
4. Pollination rates estimated by microsatellite analysis for a rejuvenated population of a perennial ryegrass genebank accession were very well described by an inverse quadratic function of inter-plant distance between potential mating pairs, while recorded flowering …

Leaves Of High Yielding Perennial Ryegrass Contain Less Aggregated Rubisco Than S23, A. Kingston-Smith, P. W. Wilkins

IGC Proceedings (1977-2023)

Breeding diploid perennial ryegrass for improved dry matter yield under nitrogen-limiting conditions has reduced the nitrogen (N) concentration of the herbage (Wilkins et al., 2003). Reduced N concentration in the ruminant diet is one potential way to reduce losses of N to the environment by reducing the amount of N that animals excrete. The underlying physiological basis of this increased N-use efficiency in ryegrass was investigated.

The Influence Of Fertiliser Application To Strip-Sown Grasslands On Herbage Production And Quality, A. Kohoutek, P. Komárek, V. Odstrčilová, P. Nerušil

IGC Proceedings (1977-2023)

To increase the productivity of dairy cattle in the Czech Republic requires an improvement in herbage quality and an increase in the net energy of herbage. The decrease in cattle numbers by 50 % and the expansion of the grassland area both result in a surplus of feedstuffs of low quality. Introduction of strip-seeding of legumes and grasses into grasslands in interaction with fertilisation provides a possible solution to this problem.

Discriminating Stay-Green Grasses Using Hyperspectral Imaging And Chemometrics, J. Taylor, B. Moore, J. J. Rowland, H. Thomas, H. J. Ougham

IGC Proceedings (1977-2023)

Screening of plant collections for traits can be expensive, in terms of the number of plants to be screened, the duration of the plant lifecycle and the required observations. This study describes the application of a non-invasive method, hyperspectral imaging, combined with multivariate analysis, to distinguish between homozygous wild-type (YY) Lolium multiflorum and Lolium multiflorum F2 back cross plants heterozygous for y, a recessive Festuca pratensis stay-green gene (Thomas et al., 1997).

Stocking Rate Theory And Profit Drivers In North Australian Rangeland Grazing Enterprises, Neil D. Macleod, A. J. Ash, John G. Mcivor

IGC Proceedings (1977-2023)

Setting correct stock numbers is a key decision for successful pastoralism. In marginal environments, typified by northern Australia, this involves careful cattle herd management across landscapes and seasons characterised by heterogeneous land condition and extreme climatic uncertainty. Stocking rate theory which links animal production to stocking rates concentrates only on liveweight gain of sale animals and ignores complex herd (e.g. reproduction, mortality) and pasture dynamics (e.g. land condition) and costs of maintaining stock numbers (e.g. supplementary feeding). Related economic models are generally naïve and incomplete, being based on liveweight gain, meat prices and variable husbandry costs (e.g. Workman, 1986). Modelling …

Using The N-Alkane Technique To Estimate The Herbage Intake And Diet Composition Of Cattle Grazing A Miscanthus Sinensis Grassland, Y. Zhang, Y. Togamura, K. Otsuki

IGC Proceedings (1977-2023)

Plant wax alkanes are now widely used as marker substances (Dove & Mayes 1991) for the estimation of forage intake and diet composition of grazing herbivores. The objective of this study was to evaluate this method with cattle grazing a M. sinensis grassland in Japan.

Grass Silage: Factors Affecting Efficiency Of N Utilisation In Milk Production, P. Huhtanen, K. J. Shingfield

IGC Proceedings (1977-2023)

Key points

1. Low efficiency of N utilisation for milk production in cows fed grass silage-based diets is mainly due to excessive N losses in the rumen.
2. The type and extent of in silo fermentation can alter the balance of absorbed nutrients.
3. There is very little experimental evidence that the capture of N in the rumen can be improved by a better synchrony between energy and N release in the rumen. Nitrogen losses in the rumen can be reduced by decreasing the ratio between rumen degradable N and fermentable energy.
4. Rapeseed meal has increased milk protein output more than isonitrogenous soybean …

Breeding Milestones Correspond With Changes To Wheat Rhizosphere Biogeochemistry That Affect P Acquisition, Rebecca Kay Mcgrail, David A. Van Sanford, David H. Mcnear Jr.

Plant and Soil Sciences Faculty Publications

Breeding wheat (Triticum aestivum L.) has resulted in small gains in improved nutrient acquisition and use as numerous traits are involved. In this study, we evaluated the impact of breeding on P-acquisition and identified both plant and soil variables that could be used to inform the selection of germplasm with increased P acquisition efficiency. We previously screened a historic panel of winter wheat cultivars for root system architecture and root tip organic acid content when grown in P-deficient solution/agar and used these characteristics together with breeding history to develop a predicted P extraction potential (PEP). We tested the validity …

Measuring Ground Surface Elevation Changes In A Slow-Moving Colluvial Landslide Using Combinations Of Regional Airborne Lidar, Uav Lidar And Uav Photogrammetric Surveys, Sarah E. Johnson, William C. Haneberg, L. Sebastian Bryson, Matthew M. Crawford

UK CARES Faculty Publications

Slow-moving, chronically destructive landslides are projected to grow in number globally in response to precipitation increases from climate change, and land disturbances from wildfire, mining and construction. In the Cincinnati and northern Kentucky metropolitan area, USA, landslides develop in colluvium that covers the steep slopes along the Ohio River and its tributaries. Here we quantify elevation changes in a slow-moving colluvial landslide over 14 years using county- wide lidar, uncrewed aerial vehicle (UAV) structure-from-motion (SfM) surveys and a UAV lidar survey. Because the technology and quality differ between surveys, the challenge was to calculate a threshold of detectable change for …

Hpv Vaccination And Cervical Cancer Screening Promotion Among Black Individuals: Social Ecological Perspectives From Key Informants Interviews, Adebola Adegboyega, Desmennu Adeyimika, Obielodan Omoadoni, Dignan Mark

UK CARES Faculty Publications

Objectives: Rates of HPV infection and HPV-related cancers are elevated in the Black population of the US. Efforts to promote HPV vaccination and cervical cancer screening are important to reducing the cancer burden among Black populations. The purpose of this qualitative descriptive study guided by social ecological model (SEM) was to describe from the perspective of key informants, the challenges and opportunities for HPV vaccination and cervical cancer screening promotion among Black adults.

Design: Twenty-three key informants participated in individual interviews over zoom video conferencing. The sessions were audio- recorded, transcribed verbatim, and checked for accuracy prior to data analysis. …

Association Of Symptoms And Mode Of Transportation To Emergency Department In Patients With Acute Coronary Syndrome, Leslie L. Davis, Thomas P. Mccoy, Barbara Riegel, Sharon Mckinley, Lynn V. Doering, Debra K. Moser

UK CARES Faculty Publications

Background: Patients with acute coronary syndrome (ACS) with symptoms matching their expectations of a heart attack are more likely to use emergency medical services (EMS) than not.

Objective: To determine whether presenting symptom clusters are associated with EMS use in ACS patients and if EMS use or symptom clusters are associated with prehospital delay.

Methods: This secondary analysis used data from the PROMOTION trial, a randomized clinical trial that enrolled 3522 subjects with a history of or at risk for ACS from 5 sites in the United States, Australia, and New Zealand. Subjects were randomized to usual care or an …

Body Mass Index Percentiles Versus Body Composition Assessments: Challenges For Disease Risk Classifications In Children, Jody L. Clasey, Elizabeth Ann Easley, Margaret O'Bryan Murphy, Stefan G. Kiessling, Arnold Stromberg, Aric Schadler, Hong Huang, John A. Bauer

UK CARES Faculty Publications

Background: Identifying at-risk children with optimal specificity and sensitivity to allow for the appropriate intervention strategies to be implemented is crucial to improving the health and well-being of children. We determined relationships of body mass indexes for age and sex percentile (BMI%) classifications to actual body composition using validated and convenient methodologies and compared fat and non-fat mass estimates to normative cut-off reference values to determine guideline reliability. We hypothesized that we would achieve an improved ability to identify at-risk children using simple, non-invasive body composition and index measures.

Methods: Cross-sectional study of a volunteer convenience sample of 1,064 (537 …

Chronic Environmental Circadian Disruption Increases Atherosclerosis And Dyslipidemia In Female, But Not Male, Apolipoproteine-Deficient Mice, Jeffrey M. Chalfant, Deborah A. Howatt, Victoria B. Johnson, Lisa R. Tannock, Alan Daugherty, Julie S. Pendergast

Saha Cardiovascular Research Center Faculty Publications

Shift work chronically disrupts circadian rhythms and increases the risk of developing cardiovascular disease. However, the mechanisms linking shift work and cardiovascular disease are largely unknown. The goal of this study was to investigate the effects of chronically shifting the light-dark (LD) cycle, which models the disordered exposure to light that may occur during shift work, on atherosclerosis. Atherosclerosis is the progressive accumulation of lipid-filled lesions within the artery wall and is the leading cause of cardiovascular disease. We studied ApolipoproteinE-deficient (ApoE−/−) mice that are a well-established model of atherosclerosis. Male and female ApoE−/− mice were housed in control 12L:12D …

Cervical Spinal Cord Injury Leads To Injury And Altered Metabolism In The Lungs, Emily E. Huffman, Brittany E. Dong, Harrison A. Clarke, Lyndsay E. A. Young, Matthew S. Gentry, Derek B. Allison, Ramon C. Sun, Christopher M. Waters, Warren J. Alilain

Saha Cardiovascular Research Center Faculty Publications

High-cervical spinal cord injury often disrupts respiratory motor pathways and disables breathing in the affected population. Moreover, cervically injured individuals are at risk for developing acute lung injury, which predicts substantial mortality rates. While the correlation between acute lung injury and spinal cord injury has been found in the clinical setting, the field lacks an animal model to interrogate the fundamental biology of this relationship. To begin to address this gap in knowledge, we performed an experimental cervical spinal cord injury (N = 18) alongside sham injury (N = 3) and naïve animals (N = 15) to assess lung injury …

Ferric Chloride-Induced Arterial Thrombosis And Sample Collection For 3d Electron Microscopy Analysis, Smita Joshi, Alexis N. Smith, Kanakanagavalli Shravani Prakhya, Hammodah Rawhi Hammodah Alfar, Joshua Lykins, Ming Zhang, Irina D. Pokrovskaya, Maria A. Aronova, Richard D. Leapman, Brian Storrie, Sidney W. Whiteheart

Saha Cardiovascular Research Center Faculty Publications

Cardiovascular diseases are a leading cause of mortality and morbidity worldwide. Aberrant thrombosis is a common feature of systemic conditions like diabetes and obesity, and chronic inflammatory diseases like atherosclerosis, cancer, and autoimmune diseases. Upon vascular injury, usually the coagulation system, platelets, and endothelium act in an orchestrated manner to prevent bleeding by forming a clot at the site of the injury. Abnormalities in this process lead to either excessive bleeding or uncontrolled thrombosis/insufficient antithrombotic activity, which translates into vessel occlusion and its sequelae. The FeCl3-induced carotid injury model is a valuable tool in probing how thrombosis initiates and progresses …

Description Of Reaction And Vibrational Energetics Of Co2-Nh3interaction Using Quantum Computing Algorithms, Manh Tien Nguyen, Yueh-Lin Lee, Dominic Alfonso, Qing Shao, Yuhua Duan

Markey Cancer Center Faculty Publications

CO2 capture is critical to solving global warming. Amine-based solvents are extensively used to chemically absorb CO2. Thus, it is crucial to study the chemical absorption of CO2 by amine-based solvents to better understand and optimize CO2 capture processes. Here, we use quantum computing algorithms to quantify molecular vibrational energies and reaction pathways between CO2 and a simplified amine-based solvent model—NH3. Molecular vibrational properties are important to understanding kinetics of reactions. However, the molecule size correlates with the strength of anharmonicity effect on vibrational properties, which can be challenging to address using classical computing. Quantum computing can help enhance molecular …

A New System For The Evaluation Of The Fermentation Quality Of Silages, K. Weiß, E. Kaiser

IGC Proceedings (1977-2023)

Depending on the content of nitrate in green forage, the pattern of fermentation products in silages differ significantly (Weiß & Kaiser, 2001). The systems, which are now common in practice for evaluating the quality of silage fermentation, characterise fermentation quality incorrectly because the evaluation is influenced by the chemical composition of green forage. The aim of this work was to derive an evaluation system for fermentation quality, which is independent from the chemical composition of green forage.

Development Of A Method For The Fast And Complete Assessment Of Quality Characteristics In Undried Grass Silages By Means Of An Nir-Diode Array Spectrometer, H. Gibaud, C. Paul, J. M. Greef, B. Ruser

IGC Proceedings (1977-2023)

Traditionally, the determination of grass silage is very time consuming and needs a lot of manpower and chemicals. The advantages of conventional laboratory NIRS instruments are well known but their disadvantage lies in their lacking suitability for on-farm use. A new type of spectrometer based on diode arrays may be used for this purpose. However, these new instruments still need to be calibrated for an accurate estimate of the fermentative and nutritive value of wet and unchopped grass silage.

A Simple Method For The Correction Of Fermentation Losses Measured In Laboratory Silos, F. Weissbach

IGC Proceedings (1977-2023)

Dry matter (DM) losses caused by formation of gaseous fermentation products can be measured by different methods. The most common method (A) is measuring the difference between the DM input and output of a silo. Other methods are based on the measurement of the fermentation gases which spontaneously leave the silo, either directly by collecting them (B) in a special absorbent like KOH or, much more easily, by weighing the filled silo at the beginning and the end of the fermentation process (C). The figures obtained by B and C are substantially smaller than those by A. This difference represents …

Intake By Lactating Goats Browsing On Mediterranean Shrubland, M. Decandia, G. Pinna, A. Cabiddu, G. Molle

IGC Proceedings (1977-2023)

In Mediterranean regions goat feeding systems are mainly based on shrubland that contain a wide variety of species. There are only a few equations for predicting feed intake of stall-fed goats (Luo et al., 2004). The objective of this study was to develop a model for predicting the intake of lactating goats browsing on Mediterranean shrubland.

What Supplementation Type For Spring Calving Dairy Cows At Grass In Autumn?, M. O'Donovan, E. Kennedy, T. Guinee, J. J. Murphy

IGC Proceedings (1977-2023)

In spring-calving herds the requirement for conserved forages for indoor feeding is very limited but these feeds may have a role to play as buffer feeds in the spring and autumn periods when grass supply is less than required or as alternatives to concentrates on pasture for cows in early lactation. The objective of this experiment was to compare alternative forages and concentrates as buffer feeds on pasture with spring-calving cows in the autumn.

The Effect Of Stocking Rate And Initial Grass Height On Herbage Production And Utilization, And Milk Production Per Unit Area Under Set Stocking By Lactating Dairy Cows, H. Nakatsuji, T. Endo, S. Bawm, T. Mitani, M. Takahashi, K. Ueda, S. Kondo

IGC Proceedings (1977-2023)

In our previous study with lactating dairy cows (Nakatsuji et al., 2004), annual herbage production and utilization, and milk production per unit area under set stocking was not always lower than under rotational grazing at the same stocking rate (6 cows/ha). Furthermore, there was a possibility that set stocking could increase pasture utilization and milk production over rotational grazing when cows were grazed at adequate stocking rate and at the appropriate initial date of grazing. The purpose of the present study was to evaluate the effect of stocking rate and initial grass height on herbage production and utilization, and …

Update On Options For Managing Thin Alfalfa Stands, Jimmy C. Henning

Kentucky Alfalfa and Stored Forage Conference

Alfalfa is the highest yielding, highest quality hay crop grown in Kentucky. Well cured alfalfa and alfalfa‐grass hay is in high demand for dairy and in particular, horse owners. Alfalfa stands in Kentucky remain productive from four to as long as 8 years or more depending on several factors. Long stand life is favored by:

1. Using an improved variety with high resistance to the major diseases of Kentucky and that is proven to be high yielding in relevant trials such as conducted at the University of Kentucky.

2. Deep, well drained soils,

3. Soils that have been limed to …

Recent Developments In Methods To Characterise The Chemical And Biological Parameters Of Grass Silage, R. S. Park, R. E. Agnew, M. G. Porter

IGC Proceedings (1977-2023)

Key points

1. Chemical analysis of forages is expensive, time consuming, environmentally unfriendly and relates poorly to the feed value for production purposes.
2. In vivo characterisation of animal feed is not a feasible option in terms of cost and analysis time.
3. NIRS is a rapid, non destructive, environmentally friendly, multi-analytical technique which can estimate the nutritive value of the feed.
4. NIRS predictive equations developed on a master instrument can be transferred to local and international sites.
5. Future assessment of forages necessitates rapid, stable, instrumentation for ‘in field’ studies.