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Full-Text Articles in Entire DC Network
Fragmentation Method For Computing Quantum Mechanics And Molecular Mechanics Gradients For Force Matching: Validation With Hydration Free Energy Predictions Using Adaptive Force Matching, Dong Zheng, Ying Yuan, Feng Wang
Fragmentation Method For Computing Quantum Mechanics And Molecular Mechanics Gradients For Force Matching: Validation With Hydration Free Energy Predictions Using Adaptive Force Matching, Dong Zheng, Ying Yuan, Feng Wang
Chemistry & Biochemistry Faculty Publications and Presentations
A fragmentation approach referred to as a simple overlapping region method for force matching (SORForM) is presented. SORForM is designed to enable efficient computation of quantum mechanical (QM) forces for large molecules and is validated in the framework of adaptive force matching (AFM) to develop solute models in water. The SORForM method divides a molecule into overlapping QM regions with each region containing a gradient zone and a buffer zone. The buffer zone ensures that the atoms in the gradient zone have their surroundings unchanged with fragmentation. The performance of the method is validated with mefenamic acid and linalyl acetate …
Process- And Product-Related Foulants In Virus Filtration, Solomon Isu, Xianghong Qian, Andrew L. Zydney, S. Ranil Wickramasinghe
Process- And Product-Related Foulants In Virus Filtration, Solomon Isu, Xianghong Qian, Andrew L. Zydney, S. Ranil Wickramasinghe
Biomedical Engineering Faculty Publications and Presentations
Regulatory authorities place stringent guidelines on the removal of contaminants during the manufacture of biopharmaceutical products. Monoclonal antibodies, Fc-fusion proteins, and other mammalian cell-derived biotherapeutics are heterogeneous molecules that are validated based on the production process and not on molecular homogeneity. Validation of clearance of potential contamination by viruses is a major challenge during the downstream purification of these therapeutics. Virus filtration is a single-use, size-based separation process in which the contaminating virus particles are retained while the therapeutic molecules pass through the membrane pores. Virus filtration is routinely used as part of the overall virus clearance strategy. Compromised performance …
Strain-Specific Transcriptional Responses Overshadow Salinity Effects In A Marine Diatom Sampled Along The Baltic Sea Salinity Cline, Eveline Pinseel, Teofil Nakov, Koen Van Den Gerge, Kala M. Downey, Kathryn Judy, Olga Kourtchenko, Anke Kremp, Elizabeth C. Ruck, Conny Sjöqvist, Mats Töpel, Anna Godhe, Andrew J. Alverson
Strain-Specific Transcriptional Responses Overshadow Salinity Effects In A Marine Diatom Sampled Along The Baltic Sea Salinity Cline, Eveline Pinseel, Teofil Nakov, Koen Van Den Gerge, Kala M. Downey, Kathryn Judy, Olga Kourtchenko, Anke Kremp, Elizabeth C. Ruck, Conny Sjöqvist, Mats Töpel, Anna Godhe, Andrew J. Alverson
Biological Sciences Faculty Publications and Presentations
The salinity gradient separating marine and freshwater environments represents a major ecological divide for microbiota, yet the mechanisms by which marine microbes have adapted to and ultimately diversified in freshwater environments are poorly understood. Here, we take advantage of a natural evolutionary experiment: the colonization of the brackish Baltic Sea by the ancestrally marine diatom Skeletonema marinoi. To understand how diatoms respond to low salinity, we characterized transcriptomic responses of acclimated S. marinoi grown in a common garden. Our experiment included eight strains from source populations spanning the Baltic Sea salinity cline. Gene expression analysis revealed that low salinities …
Donor Age And Body Weight Determine The Effects Of Fecal Microbiota Transplantation On Growth Performance, And Fecal Microbiota Development In Recipient Pigs, Xiaofan Wang, Tsungcheng Tsai, Xiaoyuan Wei, Feilong Deng, Ying Li, Charles V. Maxwell, Hua Yang, Yingping Xiao, Jiangchao Zhao
Donor Age And Body Weight Determine The Effects Of Fecal Microbiota Transplantation On Growth Performance, And Fecal Microbiota Development In Recipient Pigs, Xiaofan Wang, Tsungcheng Tsai, Xiaoyuan Wei, Feilong Deng, Ying Li, Charles V. Maxwell, Hua Yang, Yingping Xiao, Jiangchao Zhao
Animal Science Faculty Publications and Presentations
Background
The application of fecal microbiota transplantation (FMT) to improve swine growth performance has been sporadically studied. Most of these studies used a single microbiota source and thus the effect of donor characteristics on recipient pigs’ fecal microbiota development and growth performance is largely unknown.
Results
In this study, we collected feces from six donors with heavy (H) or light (L) body weight and different ages (d 42, nursery; d 96, growing; and d 170, finisher) to evaluate their effects on the growth performance and fecal microbiota development of recipient pigs. Generally, recipients that received two doses of FMT from …
Quantitative Comparison Of Avian And Mammalian Physiologies For Parameterization Of Physiologically Based Kinetic Models, Colin G. Scanes, Johannes Witt, Markus Ebeling, Stephan Schaller, Vanessa Baier, Audrey J. Bone, Thomas G. Preuss, David Heckmann
Quantitative Comparison Of Avian And Mammalian Physiologies For Parameterization Of Physiologically Based Kinetic Models, Colin G. Scanes, Johannes Witt, Markus Ebeling, Stephan Schaller, Vanessa Baier, Audrey J. Bone, Thomas G. Preuss, David Heckmann
Poultry Science Faculty Publications and Presentations
Physiologically based kinetic (PBK) models facilitate chemical risk assessment by predicting in vivo exposure while reducing the need for animal testing. PBK models for mammals have seen significant progress, which has yet to be achieved for avian systems. Here, we quantitatively compare physiological, metabolic and anatomical characteristics between birds and mammals, with the aim of facilitating bird PBK model development. For some characteristics, there is considerable complementarity between avian and mammalian species with identical values for the following: blood hemoglobin and hemoglobin concentrations per unit erythrocyte volume together with relative weights of the liver, heart, and lungs. There are also …
Quantitative Morphometric, Physiological, And Metabolic Characteristics Of Chickens And Mallards For Physiologically Based Kinetic Model Development, Colin G. Scanes, Johannes Witt, Stephan Schaller, Vanessa Baier, Audrey J. Bone, Thomas G. Preuss, David Heckmann
Quantitative Morphometric, Physiological, And Metabolic Characteristics Of Chickens And Mallards For Physiologically Based Kinetic Model Development, Colin G. Scanes, Johannes Witt, Stephan Schaller, Vanessa Baier, Audrey J. Bone, Thomas G. Preuss, David Heckmann
Poultry Science Faculty Publications and Presentations
Physiologically based kinetic (PBK) models are a promising tool for xenobiotic environmental risk assessment that could reduce animal testing by predicting in vivo exposure. PBK models for birds could further our understanding of species-specific sensitivities to xenobiotics, but would require species-specific parameterization. To this end, we summarize multiple major morphometric and physiological characteristics in chickens, particularly laying hens (Gallus gallus) and mallards (Anas platyrhynchos) in a meta-analysis of published data. Where such data did not exist, data are substituted from domesticated ducks (Anas platyrhynchos) and, in their absence, from chickens. The distribution of water …
Winter Torpor Expression Varies In Four Bat Species With Differential Susceptibility To White-Nose Syndrome, Reilly T. Jackson, Emma V. Willcox, Riley F. Bernard
Winter Torpor Expression Varies In Four Bat Species With Differential Susceptibility To White-Nose Syndrome, Reilly T. Jackson, Emma V. Willcox, Riley F. Bernard
Biological Sciences Faculty Publications and Presentations
Studies examining the overwintering behaviors of North American hibernating bats are limited to a handful of species. We deployed temperature-sensitive transmitters on four species of bat that exhibit differences in their susceptibility to white nose syndrome (WNS; Myotis grisescens, M. leibii, M. sodalis, and Perimyotis subflavus) to determine if these differences are correlated with behavior exhibited during hibernation (i.e., torpor expression and arousal frequency). Mean torpor skin temperature (Tsk) and torpor bout duration varied significantly among species (P ≤ 0.024), but arousal Tsk and duration did not (P ≥ 0.057). One of the species with …
Water Quality Adjacent To Swine Slurry Holding Ponds Associated With A Concentrated Animal Feeding Operation, Andrew Sharpley, James Burke, Kristofor Brye, Larry Berry, Phillip Hays, Mike Daniels, Karl Vandevender, Tim Glover, Brian Haggard
Water Quality Adjacent To Swine Slurry Holding Ponds Associated With A Concentrated Animal Feeding Operation, Andrew Sharpley, James Burke, Kristofor Brye, Larry Berry, Phillip Hays, Mike Daniels, Karl Vandevender, Tim Glover, Brian Haggard
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Environmental concerns exist over extended storage of liquid animal waste in outdoor holding ponds before land application, particularly in regions with underlying karst geology. To determine the effects of holding ponds on water quality, belowground interceptor trenches, groundwater (well), and a downslope ephemeral stream were monitored for water quality parameters. Nitrate-nitrogen concentrations increased (p < .0001) in well and ephemeral stream samples but decreased in trench samples (Trench 1 with a p < .0001) near the swine production facility and holding ponds over a 5-yr monitoring period (April 2014–June 2019). In contrast, chloride, which is a conservative element that can move freely through the soil without chemical, physical, or biological modification, and electrical conductivity decreased (p < .0001 to .0203) over the monitoring period in well and Trench 1 samples. Flow in the interceptor trenches was highly responsive to rainfall, suggesting the trenches were mainly capturing shallow subsurface flows initiated by rainfall. A lack of any increasing trend in chloride and electrical conductivity for ephemeral stream, well, or trench samples suggests that elevated nitrate-nitrogen concentrations in well and ephemeral stream samples may have been influenced by sources other than the liquid manure holding ponds (i.e., sources that have low chloride and electrical conductivity values). In regions with underlying karst geology, surface and subsurface water resources may require more expansive monitoring to demonstrate liquid manure holding ponds effects on nearby water quality.
Microcystin-Lr Removal From Water Via Enzymatic Linearization And Ultrafiltration, Abelline Fionah, Cannon Hackett, Hazim Aljewari, Laura Brady, Faisal Alqhtani, Isabel C. Escobar, Audie K. Thompson
Microcystin-Lr Removal From Water Via Enzymatic Linearization And Ultrafiltration, Abelline Fionah, Cannon Hackett, Hazim Aljewari, Laura Brady, Faisal Alqhtani, Isabel C. Escobar, Audie K. Thompson
Chemical Engineering Faculty Publications and Presentations
Microcystin-LR (MC-LR) is a toxin produced by cyanobacteria that can bloom in freshwater supplies. This study describes a new strategy for remediation of MC-LR that combines linearization of the toxin using microcystinase A, MlrA, enzyme with rejection of linearized byproducts using membrane filtration. The MlrA enzyme was expressed in Escherichia coli (E. coli) and purified via a His-tag with 95% purity. Additionally, composite membranes made of 95% polysulfone and 5% sulfonated polyether ether ketone (SPEEK) were fabricated and used to filter a solution containing cyclic and linearized MC-LR. Tests were also performed to measure the adsorption and desorption of MC-LR …
Fabrication Of Porous Spherical Beads From Corn Starch By Using A 3d Food Printing System, Safoura Ahmadzadeh, Ali Ubeyitogullari
Fabrication Of Porous Spherical Beads From Corn Starch By Using A 3d Food Printing System, Safoura Ahmadzadeh, Ali Ubeyitogullari
Food Science Faculty Publications and Presentations
This study introduces a 3D food printing approach to fabricate spherical starch beads with small sizes and high porosity for the first time. The results illustrated that 3D food printing could generate starch beads in different sizes depending on the nozzle diameter, printing pressure, and ink viscosity. The 3D-printed beads were characterized for their morphology, crystallinity, and textural properties, while the starch-based ink was analyzed for its rheological properties. A suitable printing was attained when viscosity was in the range of 1000–1200 Pa.s at a low shear rate (˂0.1 s−1). Among the starch concentrations (10–15%, w/w) investigated, 15% starch concentration …
Engineered Fgf1 And Fgf2 Compositions And Methods Of Use Thereof, Thallapuranam Krishnaswamy Suresh Kumar, Shilpi Agarwal, Ravi Kumar Gundampati, Srinivas Jayanthi, Tengjiao Wang, Jake Jones, Olivia Kolenc, Ngoc Thien Lam, Isabelle Ishimwe Niyonshuti, Kartik Balachandran, Kyle Quinn, Jingyi Chen
Engineered Fgf1 And Fgf2 Compositions And Methods Of Use Thereof, Thallapuranam Krishnaswamy Suresh Kumar, Shilpi Agarwal, Ravi Kumar Gundampati, Srinivas Jayanthi, Tengjiao Wang, Jake Jones, Olivia Kolenc, Ngoc Thien Lam, Isabelle Ishimwe Niyonshuti, Kartik Balachandran, Kyle Quinn, Jingyi Chen
Patents Granted
Engineered FGF1 and FGF2 polypeptides, polynucleotides encoding these polypeptides and DNA constructs, vectors and compositions including these engineered polypeptides are provided herein. The engineered FGF1 and FGF2 polypeptides are more stable than their wild-type counterparts and may be more effective at treating a variety of conditions that FGF1 and FGF2 are useful for treating such as wound healing.
Gender Gaps In Math Performance, Perceived Mathematical Ability And College Stem Education: The Role Of Parental Occupation, Lina Anaya, Frank P. Stafford, Gema Zamarro
Gender Gaps In Math Performance, Perceived Mathematical Ability And College Stem Education: The Role Of Parental Occupation, Lina Anaya, Frank P. Stafford, Gema Zamarro
Education Reform Faculty and Graduate Students Publications
Despite the promising future of employment opportunities in occupations related to Science, Technology, Engineering, and Mathematics (STEM), women remain underrepresented in some STEM occupational fields. We use data from the Panel Study of Income Dynamics to study the role of gender differences in achievement and self-perceived ability in math during childhood, along with parental occupation (science-related versus non-science-related jobs), in the subsequent decision of majoring in science in college. Our findings suggest a loss in STEM enrollment by otherwise qualified young women and highlight the potential importance of parental occupation in STEM in encouraging women's participation in certain STEM fields.
Cumulative Lifetime Stressor Exposure Assessed By The Strain Predicts Economic Ambiguity Aversion, Candace M. Raio, Benjamin B. Lu, Michael Grubb, Grant S. Shields, George M. Slavich, Paul Glimcher
Cumulative Lifetime Stressor Exposure Assessed By The Strain Predicts Economic Ambiguity Aversion, Candace M. Raio, Benjamin B. Lu, Michael Grubb, Grant S. Shields, George M. Slavich, Paul Glimcher
Psychological Science Faculty Publications and Presentations
Uncertainty is inherent in most decisions humans make. Economists distinguish between two types of decision-making under non-certain conditions: those involving risk (i.e., known outcome probabilities) and those that involve ambiguity (i.e., unknown outcome probabilities). Prior research has identified individual differences that explain risk preferences, but little is known about factors associated with ambiguity aversion. Here, we hypothesized that cumulative exposure to major psychosocial stressors over the lifespan might be one factor that predicts individuals’ ambiguity aversion. Across two studies (Study 1: n = 58, Mage = 25.7; Study 2: n = 188, Mage = 39.81), we used a …
High Resistance To Quinclorac In Multiple-Resistant Echinochloa Colona Associated With Elevated Stress Tolerance Gene Expression And Enriched Xenobiotic Detoxification Pathway, Gulab Rangani, Christopher E. Rouse, Christopher Saski, Rooksana E. Noorai, Vijay Shankar, Amy L. Lawton-Rauh, Isabel S. Werle, Nilda Roma-Burgos
High Resistance To Quinclorac In Multiple-Resistant Echinochloa Colona Associated With Elevated Stress Tolerance Gene Expression And Enriched Xenobiotic Detoxification Pathway, Gulab Rangani, Christopher E. Rouse, Christopher Saski, Rooksana E. Noorai, Vijay Shankar, Amy L. Lawton-Rauh, Isabel S. Werle, Nilda Roma-Burgos
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Echinochloa colona and other species in this genus are a threat to global rice production and food security. Quinclorac, an auxin mimic, is a common herbicide for grass weed control in rice, and Echinochloa spp. have evolved resistance to it. The complete mode of quinclorac action and subsequent evolution of resistance is not fully understood. We analyzed the de novo transcriptome of multiple-herbicide-resistant (ECO-R) and herbicide-susceptible genotypes in response to quinclorac. Several biological processes were constitutively upregulated in ECO-R, including carbon metabolism, photosynthesis, and ureide metabolism, indicating improved metabolic efficiency. The transcriptional change in ECO-R following quinclorac treatment indicates an …
Machine Learning For Modeling Wildfire Susceptibility At The State Level: An Example From Arkansas, Usa, Abdullah Al Saim, Mohamed H. Aly
Machine Learning For Modeling Wildfire Susceptibility At The State Level: An Example From Arkansas, Usa, Abdullah Al Saim, Mohamed H. Aly
Geosciences Faculty Publications and Presentations
Fire susceptibility modeling is crucial for sustaining and managing forests among many other valuable land resources. With 56% of its area covered by forests, Arkansas is known as the "natural state". About 1000 wildfires occurred and burned more than 10,000 acres each year during 1981-2018. In this paper, we use remote-sensing-based machine learning methods to address the natural and anthropogenic factors influencing wildfires and model fire susceptibility in Arkansas. Among the 15 explored variables, potential evapotranspiration, soil moisture, Palmer drought severity index, and dry season precipitation were recognized as the most significant factors contributing to the fire density. The obtained …
Studying Acetylation Of Aconitase Isozymes By Genetic Code Expansion, Jessica Araujo, Sara Ottinger, Sumana Venkat, Qinglei Gan, Chenguang Fan
Studying Acetylation Of Aconitase Isozymes By Genetic Code Expansion, Jessica Araujo, Sara Ottinger, Sumana Venkat, Qinglei Gan, Chenguang Fan
Chemistry & Biochemistry Faculty Publications and Presentations
Aconitase catalyzes the second reaction of the tricarboxylic acid cycle, the reversible conversion of citrate and isocitrate. Escherichia coli has two isoforms of aconitase, AcnA and AcnB. Acetylomic studies have identified acetylation at multiple lysine sites of both E. coli aconitase isozymes, but the impacts of acetylation on aconitases are unknown. In this study, we applied the genetic code expansion approach to produce 14 site-specifically acetylated aconitase variants. Enzyme assays and kinetic analyses showed that acetylation of AcnA K684 decreased the enzyme activity, while acetylation of AcnB K567 increased the enzyme activity. Further in vitro acetylation and deacetylation assays were …
Measurable Microcystin In Ozark Streams Was Rare During Summer 2018 Baseflow Conditions, Bradley J. Austin, Brian E. Haggard
Measurable Microcystin In Ozark Streams Was Rare During Summer 2018 Baseflow Conditions, Bradley J. Austin, Brian E. Haggard
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Accelerated eutrophication due to human activity has been linked to an increase in the occurrence of cyanobacteria in freshwater systems. The purpose of this study was to document the occurrence of microcystin, a common cyanotoxin, within northwest Arkansas streams. Twenty streams were sampled from May through October 2018, and water and periphyton samples were analyzed for microcystin and chlorophyll-a (CHL-a). Mean microcystin concentrations in water samples were low across sites, ranging from < 0.10 to 0.21 μg L−1. Mean microcystin in the periphyton across sites ranged from 2.6 to 9.9 μg m−2 and were within values observed in the literature. …
Avian Orexin: Feed Intake Regulator Or Something Else?, Alison Ramser, Sami Dridi
Avian Orexin: Feed Intake Regulator Or Something Else?, Alison Ramser, Sami Dridi
Poultry Science Faculty Publications and Presentations
Originally named for its expression in the posterior hypothalamus in rats and after the Greek word for "appetite", hypocretin, or orexin, as it is known today, gained notoriety as a neuropeptide regulating feeding behavior, energy homeostasis, and sleep. Orexin has been proven to be involved in both central and peripheral control of neuroendocrine functions, energy balance, and metabolism. Since its discovery, its ability to increase appetite as well as regulate feeding behavior has been widely explored in mammalian food production animals such as cattle, pigs, and sheep. It is also linked to neurological disorders, leading to its intensive investigation in …
Soil Organic Carbon And Nutrients Affected By Tree Species And Poultry Litter In A 17-Year Agroforestry Site, Helen C.S. Amorim, Amanda J. Ashworth, Yuri L. Zinn, Thomas J. Sauer
Soil Organic Carbon And Nutrients Affected By Tree Species And Poultry Litter In A 17-Year Agroforestry Site, Helen C.S. Amorim, Amanda J. Ashworth, Yuri L. Zinn, Thomas J. Sauer
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Tree species and fertilization sources may affect the soil organic carbon (SOC) and fertility in agroforestry (AF) systems in temperate regions, but this remains unexplored. This study assesses the longitudinal trends in the SOC and major nutrients in a 17-year AF site established on an Ultisol in Fayetteville, AR. We evaluated how management and fertilization (mineral vs. organic) affect the soil’s physical and chemical properties using the tree species: red oak (Quercus rubra L.) and pecan Carya illinoinensis (Wangenh.) K. Koch. Long-term applications of poultry litter increased the soil pH, whereas the Mg and S concentrations decreased compared to …
Measurable Microcystin In Ozark Streams Was Rare During Summer 2018 Baseflow Conditions, Bradley J. Austin, Brian E. Haggard
Measurable Microcystin In Ozark Streams Was Rare During Summer 2018 Baseflow Conditions, Bradley J. Austin, Brian E. Haggard
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Accelerated eutrophication due to human activity has been linked to an increase in the occurrence of cyanobacteria in freshwater systems. The purpose of this study was to document the occurrence of microcystin, a common cyanotoxin, within northwest Arkansas streams. Twenty streams were sampled from May through October 2018, and water and periphyton samples were analyzed for microcystin and chlorophyll-a (CHL-a). Mean microcystin concentrations in water samples were low across sites, ranging from < 0.10 to 0.21 μg L−1. Mean microcystin in the periphyton across sites ranged from 2.6 to 9.9 μg m−2 and were within values observed in the literature. …
Effect Of Dicamba On Reproductive Development In Corn And Rice, Mason Castner, Jason K. Norsworthy, L. Tom Barber, Trenton Lee Roberts, Edward E. Gbur
Effect Of Dicamba On Reproductive Development In Corn And Rice, Mason Castner, Jason K. Norsworthy, L. Tom Barber, Trenton Lee Roberts, Edward E. Gbur
Crop, Soil and Environmental Sciences Faculty Publications and Presentations
Research has been published regarding the effects of sublethal dicamba rates applied at different growth stages in soybean [Glycine max (L.) Merr.]; however, there is limited research on the effect of dicamba on reproductive growth in corn (Zea mays L.) and rice (Oryza sativa L.). Experiments were conducted in 2018 and 2019 to determine the potential consequences of dicamba exposure to reproductive stages of corn and rice. Dicamba was applied at 0.56, 5.6, 56, and 560 g ae ha–1, with a 1X rate being 560 g ae ha–1. Each rate was applied at …
Weaning Time Affects The Archaeal Community Structure And Functional Potential In Pigs, Feilong Deng, Yunjuan Peng, Zhihao Zhang, Samantha Howe, Zhuosui Wu, Jieying Dou, Yuling Li, Xiaoyuan Wei, Xiaofan Wang, Yong Liang, Jiangchao Zhao, Ying Li
Weaning Time Affects The Archaeal Community Structure And Functional Potential In Pigs, Feilong Deng, Yunjuan Peng, Zhihao Zhang, Samantha Howe, Zhuosui Wu, Jieying Dou, Yuling Li, Xiaoyuan Wei, Xiaofan Wang, Yong Liang, Jiangchao Zhao, Ying Li
Animal Science Faculty Publications and Presentations
Archaea are considered a “keystone” of the gut microbiome and are linked with the host’s energy harvest and health. Although a few studies have investigated the gut archaea in pigs, especially piglets, little is known about the effects of weaning on archaeal structure and function. In this study, we explored the effects of weaning on the longitudinal changes of archaeal composition, diversity, and functional potential in pigs overtime by re-analyzing a recently published metagenomic dataset that included 176 fecal samples collected from commercial pigs on days 7, 14, 21, 28, 35, 70, and 140 after birth. Overall, the richness and …
Glutathione S-Transferase: A Candidate Gene For Berry Color In Muscadine Grapes (Vitis RotundifoliA), Aruna Varanasi, Margaret Worthington, Lacy Nelson, Autumn Brown, Thomas Mason Chizk, Renee Threlfall, Luke Howard, Patrick Conner, Rosa Figueroa-Balderas, Melanie Massonnet, Dario Cantu, John R. Clark
Glutathione S-Transferase: A Candidate Gene For Berry Color In Muscadine Grapes (Vitis RotundifoliA), Aruna Varanasi, Margaret Worthington, Lacy Nelson, Autumn Brown, Thomas Mason Chizk, Renee Threlfall, Luke Howard, Patrick Conner, Rosa Figueroa-Balderas, Melanie Massonnet, Dario Cantu, John R. Clark
Horticulture Faculty Publications and Presentations
Muscadine grapes (Vitis rotundifolia Michx.) are a specialty crop cultivated in the southern United States. Muscadines (2n = 40) belong to the Muscadinia subgenus of Vitis, while other cultivated grape species belong to the subgenus Euvitis (2n = 38). The muscadine berry color locus was mapped to a 0.8 Mbp region syntenic with chromosome 4 of Vitis vinifera. In this study, we identified glutathione S-transferase4 as a likely candidate gene for anthocyanin transport within the berry color locus. PCR and Kompetitive allele-specific PCR genotyping identified a single intragenic SNP (C/T) marker corresponding to a proline …
The Use Of Electronic Nose In The Quality Evaluation And Adulteration Identification Of Beijing-You Chicken, Jingru Chen, Wenjie Yan, Yu Fu, Liang Wang, Xueze Lv, Ruitong Dai, Xingming Li, Fei Jia
The Use Of Electronic Nose In The Quality Evaluation And Adulteration Identification Of Beijing-You Chicken, Jingru Chen, Wenjie Yan, Yu Fu, Liang Wang, Xueze Lv, Ruitong Dai, Xingming Li, Fei Jia
Biological and Agricultural Engineering Faculty Publications and Presentations
The objective of this study was to reveal the secrets of the unique meat characteristics of Beijing-you chicken (BJY) and to compare the difference of quality and flavor with Luhua chicken (LH) and Arbor Acres broiler (AA) at their typical market ages. The results showed the meat of BJY was richer in essential amino acids, arachidonic acid contents, inosine monophosphate (IMP), and guanosine monophosphate (GMP). The total fatty acid and unsaturated fatty acid contents of BJY chicken and LH chicken were lower than that of AA broilers, whereas the ratios of unsaturated fatty acids/saturated fatty acids (2.31) and polyunsaturated fatty …
Review: Biological Engineering For Nature-Based Climate Solutions, Benjamin R. K. Runkle
Review: Biological Engineering For Nature-Based Climate Solutions, Benjamin R. K. Runkle
Biological and Agricultural Engineering Faculty Publications and Presentations
Nature-based Climate Solutions are landscape stewardship techniques to reduce greenhouse gas emissions and increase soil or biomass carbon sequestration. These mitigation approaches to climate change present an opportunity to supplement energy sector decarbonization and provide co-benefits in terms of ecosystem services and landscape productivity. The biological engineering profession must be involved in the research and implementation of these solutions—developing new tools to aid in decision-making, methods to optimize across different objectives, and new messaging frameworks to assist in prioritizing among different options. Furthermore, the biological engineering curriculum should be redesigned to reflect the needs of carbon-based landscape management. While doing …
Systems And Processes For Early Detection Of Biological Ammonia Oxidation In Water Using Fluorometry, Julian Fairey, Thien Duc Do, Ashley Pifer, David G. Wahman
Systems And Processes For Early Detection Of Biological Ammonia Oxidation In Water Using Fluorometry, Julian Fairey, Thien Duc Do, Ashley Pifer, David G. Wahman
Patents Granted
This invention relates generally to a system and process for early detection of biological ammonia oxidation in water utilizing a fluorescence-based sensor and process. Various embodiments are configured to read increases in a fluorescence excitation-emission wavelength pair that is responsive to a period of time (days to weeks or even longer) prior to the onset of biological ammonia oxidation, which is considered to be a nitrification event. Fluorescence excitation/emission pairs that have proven to be reliable include a fluorescence excitation wavelength of about 230 nm and an emission wavelength of about 345 nm and an excitation wavelength of 325 and …
Reactive Oxygen Species In Plant Interactions With Aphids, Fiona L. Goggins, Hilary D. Fischer
Reactive Oxygen Species In Plant Interactions With Aphids, Fiona L. Goggins, Hilary D. Fischer
Entomology Faculty Publications and Presentations
Reactive oxygen species (ROS) such as hydrogen peroxide and superoxide are produced in plants in response to many biotic and abiotic stressors, and they can enhance stress adaptation in certain circumstances or mediate symptom development in others. The roles of ROS in plant-pathogen interactions have been extensively studied, but far less is known about their involvement in plant-insect interactions. A growing body of evidence, however, indicates that ROS accumulate in response to aphids, an economically damaging group of phloem-feeding insects. This review will cover the current state of knowledge about when, where, and how ROS accumulate in response to aphids, …
Whole-Genome Sequence And Interaction Analysis In The Production Of Six Enzymes From The Three Bacillus Strains Present In A Commercial Direct-Fed Microbial (Norum™) Using A Bliss Independence Test, Daniel Hernandez-Patlan, Bruno Solis-Cruz, Juan D. Latorre, Ruben Merino-Guzman, Miguel Morales Rodriguez, Catie Ausland, Xochitl Hernandez-Velasco, Oscar Ortiz Holguin, Ramiro Delgado, Billy Hargis, Pallavi Singh, Guillermo Tellez-Isaias
Whole-Genome Sequence And Interaction Analysis In The Production Of Six Enzymes From The Three Bacillus Strains Present In A Commercial Direct-Fed Microbial (Norum™) Using A Bliss Independence Test, Daniel Hernandez-Patlan, Bruno Solis-Cruz, Juan D. Latorre, Ruben Merino-Guzman, Miguel Morales Rodriguez, Catie Ausland, Xochitl Hernandez-Velasco, Oscar Ortiz Holguin, Ramiro Delgado, Billy Hargis, Pallavi Singh, Guillermo Tellez-Isaias
Poultry Science Faculty Publications and Presentations
The three Bacillus strains present in Norum™ were initially selected by their excellent to good relative enzyme activity (REA) production score for amylase, protease, lipase, phytase, cellulase, β-glucanase, and xylanase. Further studies confirmed that the three isolates also showed an antibacterial activity, Gram-positive and Gram-negative poultry pathogens. Norum™ (Eco-Bio/Euxxis Bioscience LLC) is a Bacillus spore direct-fed microbial (DFM). The Bacillus isolates were screened and selected based on in vitro enzyme production profiles. Moreover, in chickens fed high non-starch polysaccharides, this DFM demonstrated to reduce digesta viscosity, bacterial translocation, increase performance, bone mineralization, and balance the intestinal microbiota. In the present …
Evaluation Of Peat Blended With Pine Wood Components For Effects On Substrate Physical Properties, Nitrogen Immobilization, And Growth Of Petunia (Petunia X Hybrida Vilm.-Andr.), Ryan W. Dickson, Kalyn M. Helms, Brian E. Jackson, Leala M. Machesney, Jung Ae Lee
Evaluation Of Peat Blended With Pine Wood Components For Effects On Substrate Physical Properties, Nitrogen Immobilization, And Growth Of Petunia (Petunia X Hybrida Vilm.-Andr.), Ryan W. Dickson, Kalyn M. Helms, Brian E. Jackson, Leala M. Machesney, Jung Ae Lee
Horticulture Faculty Publications and Presentations
The first objective was to evaluate wood components for differences in nitrogen (N) immobilization and effects on substrate physical properties. The second objective was to evaluate peat substrates amended with pine wood components for effects on plant growth, shoot tissue N, and fertigation practices during production. Substrates consisted of a coarse sphagnum peat blended with four types of processed pine wood at rates of 15%, 30%, 45%, and 60% (by volume). For comparison, peat was also blended with an aged pine bark, perlite, and coconut coir. Nitrogen immobilization was measured for individual components, except perlite. Individual components and blended substrates …
Probiotics, Prebiotics, And Phytogenic Substances For Optimizing Gut Health In Poultry, Awad A. Shehata, Sakine Yalçın, Juan D. Latorre, Shereen Basiouni, Youssef A. Attia, Amr Abd El-Wahab, Christian Visscher, Hesham R. El-Seedi, Claudia Huber, Hafez M. Hafez, Wolfgang Eisenreich, Guillermo Tellez-Isaias
Probiotics, Prebiotics, And Phytogenic Substances For Optimizing Gut Health In Poultry, Awad A. Shehata, Sakine Yalçın, Juan D. Latorre, Shereen Basiouni, Youssef A. Attia, Amr Abd El-Wahab, Christian Visscher, Hesham R. El-Seedi, Claudia Huber, Hafez M. Hafez, Wolfgang Eisenreich, Guillermo Tellez-Isaias
Poultry Science Faculty Publications and Presentations
The gut microbiota has been designated as a hidden metabolic 'organ' because of its enormous impact on host metabolism, physiology, nutrition, and immune function. The connection between the intestinal microbiota and their respective host animals is dynamic and, in general, mutually beneficial. This complicated interaction is seen as a determinant of health and disease; thus, intestinal dysbiosis is linked with several metabolic diseases. Therefore, tractable strategies targeting the regulation of intestinal microbiota can control several diseases that are closely related to inflammatory and metabolic disorders. As a result, animal health and performance are improved. One of these strategies is related …