Digital Commons Network^™

A Genome-Wide Association Study Reveals Region Associated With Seed Protein Content In Cowpea, Yilin Chen, Haizheng Xiong, Waltram Ravelombola, Gehendra Bhattarai, Casey Barickman, Ibtisam Alatawi, Theresa Makawa Phiri, Kenani Chiwina, Beiquan Mou, Shyam Tallury, Ainong Shi

Horticulture Faculty Publications and Presentations

Cowpea (Vigna unguiculata L. Walp., 2n = 2x = 22) is a protein-rich crop that complements staple cereals for humans and serves as fodder for livestock. It is widely grown in Africa and other developing countries as the primary source of protein in the diet; therefore, it is necessary to identify the protein-related loci to improve cowpea breeding. In the current study, we conducted a genome-wide association study (GWAS) on 161 cowpea accessions (151 USDA germplasm plus 10 Arkansas breeding lines) with a wide range of seed protein contents (21.8~28.9%) with 110,155 high-quality whole-genome single-nucleotide polymorphisms (SNPs) to identify …

The Time-Course Of Cancer Cachexia Onset Reveals Biphasic Transcriptional Disruptions In Female Skeletal Muscle Distinct From Males, Francielly Morena, Seongkyun Lim, Ana Regina Cabrera, Eleanor R. Schrems, Ronald G. Jones, Megan E. Rosa-Caldwell, Tyrone A. Washington, Kevin A. Murach, Nicholas P. Greene

Health, Human Performance and Recreation Faculty Publications and Presentations

Background

Cancer-cachexia (CC) is a debilitating condition affecting up to 80% of cancer patients and contributing to 40% of cancer-related deaths. While evidence suggests biological sex differences in the development of CC, assessments of the female transcriptome in CC are lacking, and direct comparisons between sexes are scarce. This study aimed to define the time course of Lewis lung carcinoma (LLC)-induced CC in females using transcriptomics, while directly comparing biological sex differences.

Results

We found the global gene expression of the gastrocnemius muscle of female mice revealed biphasic transcriptomic alterations, with one at 1 week following tumor allograft and another …

Arkansas Corn And Grain Sorghum Research Studies 2022, Victor Ford, Jason Kelley, Nathan Mckinney Ii

Arkansas Agricultural Experiment Station Research Series

The 2022 edition of the Arkansas Corn and Grain Sorghum Research Studies Series includes research results on topics pertaining to corn and grain sorghum production, including weed, disease, and insect management; economics; sustainability; irrigation; post-harvest drying; soil fertility; mycotoxins; cover crop management; and research verification program results. Our objective is to capture and broadly distribute the results of research projects funded by the Arkansas Corn and Grain Sorghum Board. The intended audience includes producers and their advisors, current investigators, and future researchers. The Series serves as a citable archive of research results.

Reports in this publication are 2–3 year summaries. …

Mitochondrial Transfer From Cancer-Associated Fibroblasts Increases Migration In Aggressive Breast Cancer, Kevin F. Gwolas, Sarah Libring, Emily Berestesky, Shayan Gholizadeh, Samantha C. Schwager, Andra R. Frost, Thomas R. Gaborski, Jian Zhang, Cynthia A. Reinhart-King

Biomedical Engineering Faculty Publications and Presentations

Cancer-associated fibroblasts (CAFs) have distinct roles within the tumor microenvironment, which can impact the mode and efficacy of tumor cell migration. CAFs are known to increase invasion of less-aggressive breast cancer cells through matrix remodeling and leader–follower dynamics. Here, we demonstrate that CAFs communicate with breast cancer cells through the formation of contact-dependent tunneling nanotubes (TNTs), which allow for the exchange of cargo between cell types. CAF mitochondria are an integral cargo component and are sufficient to increase the 3D migration of cancer cells. This cargo transfer results in an increase in mitochondrial ATP production in cancer cells, whereas it …

International Rice Outlook: International Rice Baseline Projections 2022-2032, A. Durand-Morat, S. Bairagi, W. Mulimbi

AAES Research Reports and Research Bulletins

Rice prices in Asia increased since the Summer of 2022 mainly due to worries about a reduction in rice production in India caused by an abnormal monsoon season (Fig. 1). The upward trend in export prices solidified after India implemented a 20% export tariff on brown and milled long-grain rice, and a complete ban on exports of broken rice, in September 2022 to curve down exports and release the pressure on domestic rice prices. India’s rice export prices increased since then and proportionally to the value of the export tax. The latest estimates put rice production at 128 million metric …

Addressing The Embeddability Problem In Transition Rate Estimation, Curtis Goolsby, James Losey, Ashkan Fakharzadeh, Yuchen Xu, Marie-Christine Düker, Mila Getmansky Sherman, David S. Matteson, Mahmoud Moradi

Chemistry & Biochemistry Faculty Publications and Presentations

Markov State Models (MSM) and related techniques have gained significant traction as a tool for analyzing and guiding molecular dynamics (MD) simulations due to their ability to extract structural, thermodynamic, and kinetic information on proteins using computationally feasible MD simulations. The MSM analysis often relies on spectral decomposition of empirically generated transition matrices. This work discusses an alternative approach for extracting the thermodynamic and kinetic information from the so-called rate/generator matrix rather than the transition matrix. Although the rate matrix itself is built from the empirical transition matrix, it provides an alternative approach for estimating both thermodynamic and kinetic quantities, …

Cpsrp43 Is Both Highly Flexible And Stable: Structural Insights Using A Combined Experimental And Computational Approach, Mitchell Benton, Mercede Furr, Vivek Govind Kumar, Adithya Polasa, Feng Gao, Colin David Heyes, Thallapuranam Krishnaswamy Suresh Kumar, Mahmoud Moradi

Chemistry & Biochemistry Faculty Publications and Presentations

The novel multidomain protein, cpSRP43, is a unique subunit of the post-translational chloroplast signal recognition particle (cpSRP) targeting pathway in higher plants. The cpSRP pathway is responsible for targeting and insertion of light-harvesting chlorophyll a/b binding proteins (LHCPs) to the thylakoid membrane. Upon emergence into the stroma, LHCPs form a soluble transit complex with the cpSRP heterodimer, which is composed of cpSRP43 and cpSRP54. cpSRP43 is irreplaceable as a chaperone to LHCPs in their translocation to the thylakoid membrane and remarkable in its ability to dissolve aggregates of LHCPs without the need for external energy input. In previous studies, cpSRP43 …

The Alternating Access Mechanism In Mammalian Multidrug Resistance Transporters And Their Bacterial Homologs, Shadi A. Badiee, Ugochi H. Isu, Ehsaneh Khodadadi, Mahmoud Moradi

Chemistry & Biochemistry Faculty Publications and Presentations

Multidrug resistance (MDR) proteins belonging to the ATP-Binding Cassette (ABC) transporter group play a crucial role in the export of cytotoxic drugs across cell membranes. These proteins are particularly fascinating due to their ability to confer drug resistance, which subsequently leads to the failure of therapeutic interventions and hinders successful treatments. One key mechanism by which multidrug resistance (MDR) proteins carry out their transport function is through alternating access. This mechanism involves intricate conformational changes that enable the binding and transport of substrates across cellular membranes. In this extensive review, we provide an overview of ABC transporters, including their classifications …

Herbicide Physiology And Environmental Fate, Luis Avila, Nilda Roma-Burgos

Crop, Soil and Environmental Sciences Faculty Publications and Presentations

Editorial

Herbicide Physiology and Environmental Fate

Movement Patterns Of Two Bat Species Active During Winter In The Southeastern United States, Reilly T. Jackson, Emma V. Wilcox, Riley F. Bernard

Biological Sciences Faculty Publications and Presentations

During winter in the southeastern United States, cavernicolous bats, many species of which are susceptible to white-nose syndrome, periodically arouse from torpor and occasionally leave hibernacula. We investigated the winter movements and habitat use of two bat species persisting during the white-nose syndrome epizootic: the gray bat Myotis grisescens and the eastern small-footed bat Myotis leibii. We deployed very-high-frequency radio transmitters on individual bats captured outside hibernacula to investigate activity, which may include foraging, during winter. We tracked bats from release at the cave entrance until their transmitter signal was lost or they remained stationary for 15 min or …

Clinical Utility Of Mesenchymal Stem/Stromal Cells In Regenerative Medicine And Cellular Therapy, Vitali V. Maldonado, Neel H. Patel, Emma E. Smith, C. Lowry Barnes, Michael P. Gustafson, Raj R. Rao, Rebekah M. Samsonraj

Biomedical Engineering Faculty Publications and Presentations

Mesenchymal stem/stromal cells (MSCs) have been carefully examined to have tremendous potential in regenerative medicine. With their immunomodulatory and regenerative properties, MSCs have numerous applications within the clinical sector. MSCs have the properties of multilineage differentiation, paracrine signaling, and can be isolated from various tissues, which makes them a key candidate for applications in numerous organ systems. To accentuate the importance of MSC therapy for a range of clinical indications, this review highlights MSC-specific studies on the musculoskeletal, nervous, cardiovascular, and immune systems where most trials are reported. Furthermore, an updated list of the different types of MSCs used in …

Genome-Wide Association Identifies Key Loci Controlling Blackberry Postharvest Quality, T. Mason Chizk, John R. Clark, Carmen Johns, Lacy Nelson, Hamid Ashrafi, Rishi Aryal, Margaret Worthington

Horticulture Faculty Publications and Presentations

Introduction: Blackberry (Rubus subgenus Rubus) is a soft-fruited specialty crop that often suffers economic losses due to degradation in the shipping process. During transportation, fresh-market blackberries commonly leak, decay, deform, or become discolored through a disorder known as red drupelet reversion (RDR). Over the past 50 years, breeding programs have achieved better fruit firmness and postharvest quality through traditional selection methods, but the underlying genetic variation is poorly understood.

Methods: We conducted a genome-wide association of fruit firmness and RDR measured in 300 tetraploid fresh-market blackberry genotypes from 2019-2021 with 65,995 SNPs concentrated in genic regions of the …

Arkansas Soybean Performance Tests 2022, J. F. Carlin, R. B. Mulloy, R. D. Bond

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/ or marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.

Chemistry And Biochemistry Affiliated Publications: Snapshot Of The Research Publications 2019-2022, Jeremy Smith, Lutishoor Salisbury

University Libraries Faculty Publications and Presentations

This report highlights the chemistry and biochemistry faculty publications for the period 2019-2022.

It include tables identifying the types of publications, the JCR ranking of the journals in which they published and a listing of their publications, etc.

Impact Of Eimeria Meleagrimitis And Intermittent Amprolium Treatment On Performance And The Gut Microbiome Composition Of Turkey Poults, Carolina Trujillo-Peralta, Juan David Latorre, Jianmin Chai, Roberto Señas-Cuesta, Aaron Forga, Makenly Coles, Jiangchao Zhao, Xochitl Hernandez-Velasco, Guillermo Tellez-Isaias, John R. Barta, Lisa Bielke, Billy Hargis, Danielle Graham

Poultry Science Faculty Publications and Presentations

Introduction: Drug-sensitive live coccidiosis vaccines have been used to control coccidiosis and renew drug sensitivity in commercial chicken operations. However, only limited species coverage vaccines have been available for commercial turkey producers. This study aimed to assess the effect of an E. meleagrimitis vaccine candidate, with and without amprolium intervention, on performance and oocyst shedding. Additionally, the effect of vaccination, amprolium treatment, and E. meleagrimitis challenge on intestinal integrity and microbiome composition was evaluated.

Methods: Experimental groups included: (1) NC (non-vaccinated, non-challenged control); (2) PC (non-vaccinated, challenged control); (3) VX + Amprol (E. meleagrimitis candidate vaccine + amprolium); and …

Office Of Nationally Competitive Awards, Inquiry Editors

Inquiry: The University of Arkansas Undergraduate Research Journal

No abstract provided.

Inquiry: The Unversity Of Arkansas Undergraduate Research Journal - Volume 22 Issue 1 - Spring 2023, Inquiry Editors

Inquiry: The University of Arkansas Undergraduate Research Journal

No abstract provided.

Smart-Insect Monitoring System Integration And Interaction Via Ai Cloud Deployment And Gpt, Ahmed Moustafa

Computer Science and Computer Engineering Undergraduate Honors Theses

The Insect Detection Server was developed to explore the deployment and integration of an Artificial Intelligence model for Computer Vision in the context of insect detection. The model was developed to accurately identify insects from images taken by camera systems installed on farms. The goal is to integrate the model into an easily accessible, cloud-based application that allows farmers to analyze automatically uploaded images containing groups of insects found on their farms. The application returns the bounding boxes and the detected classes of insects whenever an image is captured on-site, enabling farmers to take appropriate actions to address the issue …

Temporal, Phenotypic, And Quantitative Characterization Of Thyroid Infiltrating Mononuclear Cells During Development Of Spontaneous Autoimmune Thyroiditis In Obese Strain Chickens, Katelyn M. Clark

Poultry Science Undergraduate Honors Theses

The Obese strain (OS) of chickens spontaneously develops autoimmune thyroiditis and is a well-established biomedical model for Hashimoto’s thyroiditis in humans. Both conditions are characterized by the infiltration of the thyroid glands with mononuclear cells resulting in destruction of the thyroid tissue and impairment of the thyroid’s endocrinological functions. Past studies have described mononuclear cell infiltration in thyroids of the OS chickens, but the time-course, cell composition, and relative amounts of the various mononuclear cells infiltrating the thyroids has not been well defined. In this project, the mononuclear cell infiltrate was characterized phenotypically and quantitatively in OS chickens over the …

The Use Of Fluorescence Resonance Energy Transfer And Bent Dna To Study Dna And Ion Interactions, Kaitlin Bullard

Physics Undergraduate Honors Theses

Studying DNA interactions is advantageous to developments in the medical field since DNA and its interactions affect our health greatly. In addition, it is important to understand how the bendability of DNA depends on metal ions, which are essential for various fundamental processes in cells. In this work, we investigate the use of FRET and self-assembled bent DNA molecules to quantify DNA interactions with magnesium ions. We measured that the FRET efficiency increased at higher concentrations of magnesium ions. We also ran simulations to further understand the mechanisms. These observations show that magnesium ions increase the stability and flexibility of …

Fabrication Of Black Phosphorus Terahertz Photoconductive Antennas, Nathan Tanner Sawyers

Physics Undergraduate Honors Theses

Terahertz (THz) photoconductive antennas (PCAs) using 40nm thin-film flakes of black phosphorus (BP) and hexagonal boron nitride (hBN) have been shown computationally to be capable of THz emission comparable to those based on GaAs [2]. In this paper, I briefly describe the scientific and practical interest in THz emissions and explain what warrants research into black phosphorus as a photoconductive semiconductor in THz devices. Furthermore, I outline the basic principle of how these antennas work and mention alternative designs produced by other researchers in the past. Finally, I summarize the fabrication process of these antennas, as well as the measurements …

The Evolution Of 5g: Delineating The Impact And Limitations Across Transportation, Education, Healthcare, Agriculture, And Manufacturing, Thomas Bailey

Information Systems Undergraduate Honors Theses

A world previously only thought possible in science fiction is about to become a reality. A world where doctors can operate on patients thousands of miles away. A world where students can experience ancient cities and distant galalike they are physically there. A world of fully self-driving cars. A world where every step of the supply chain is automated. A world where factories have a handful of employees overseeing robots handling the entire manufacturing process. A world of fully autonomous farms, where one farmer can manage an entire farm from seed to harvest from their smartphone. The development, implementation, and …

Photocatalytic Nanoparticle Treatment Of Cyanotoxins In Harmful Algal Blooms, Brian Baird

Civil Engineering Undergraduate Honors Theses

Harmful Algal Blooms (HAB) have the ability to cause detriment to water bodies, ecosystems, and human health. Furthermore, current evidence suggests that these events are becoming increasingly common due to factors such as increased pollution and global warming. While there are current methods to treat water that is negatively impacted by the bacteria and toxins associated with HABs, these methods are often costly and inefficient. The purpose of this research is to explore a potential treatment option that uses titanium dioxide photocatalytic nanoparticles attached to a retractable net to treat toxins produced by HABs in situ. Specifically, the toxin …

Upcycling Imperfect Broccoli And Carrot To Healthy Snacks Using An Innovative 3d Food Printing Approach, Taylor Clary

Food Science Undergraduate Honors Theses

Vegetables are healthy foods with nutritional benefits; however, nearly one-third of the world’s fruits and vegetables are lost each year. The losses have the same nutritional value as an acceptable vegetable but have odd shapes or blemishes that make them unsuitable to consumers. 3D technology has numerous capabilities in the automotive, healthcare, and, now, food industries. Within the food industry, 3D food printing can bring customization to product design and nutrition as well as other advancements, including decreasing food waste. In this study, imperfect vegetables (i.e., broccoli and carrot) were upcycled into freeze-dried powders to improve their shelf-life before they …

Student Preferences On The Development Of A Non-Alcoholic Beverage Product To Alleviate The Negative Impact Of Alcohol On College Campuses, Cecilia Azar

Human Nutrition and Hospitality Management Undergraduate Honors Theses

Alcohol abuse and peer pressure to drink are prominent issues on college campuses across the nation. More than 50 percent of college students aged 18 to 22 consume alcohol monthly and 33 percent consistently engage in binge drinking (National Institute on Alcohol Abuse and Alcoholism, 2021a). A non-alcoholic beverage product marketed to students as an alternative to alcohol in social settings could alleviate some of the negative impacts, such as peer pressure and the dangers caused by overconsumption.

Through two phases, this study implements University of Arkansas student preferences and recipe modification in the development of a non-alcoholic beverage product …

Effects Of Time Restricted Feeding And Whey Protein Isolate Supplementation On Dietary Intake, Mood, And Sleep In A 12-Week Randomized Controlled Trial, Sydney Boudrey

Human Nutrition and Hospitality Management Undergraduate Honors Theses

Background: Obesity is a quickly growing epidemic that is affecting adults in the United States leading to many chronic diseases and reduced well-being. Time Restricted Feeding (TRF) is type of dietary intervention that is gaining popularity among adults for weight loss. However, current data is lacking regarding the effectiveness of TRF on facets of well-being such as sleep and mood. Moreover, to our knowledge protein supplementation in conjunction with TRF has yet to be studied. The objective of this study was to determine the effect of time restricted feeding supplemented with whey protein isolate on food intake, sleep, and mood, …

Comparing Allistic And Autistic Honors Students’ Perceived Barriers To Succeeding In Honors And Their Preferred Resources, Vivian Brantley

Horticulture Undergraduate Honors Theses

In recent years, neurodivergent diagnoses have increased, particularly Autism Spectrum Disorders (ASD). The Center for Disease Control (CDC) reported that as of 2020, among eight-year-olds, one in 36 children were diagnosed with ASD. Among college students with ASD there are many barriers to succeeding in higher education, such as being predisposed to higher drop-out rates than their allistic counterparts. Students with ASD struggle with many basic skills required to succeed in higher education like language processing and executive function. Because of their ASD diagnosis students may also struggle with the additional responsibilities associated with honors programs such as maintaining certain …

University Campus Breastfeeding, Knowledge, And Perceptions Of Support: An Exploratory Study, Allison L. Scott, Ann W. Lambert, Chih-Hsuan Wang, Kelly V. Johnson, Jessica Weiss, Tony Stankus

The Eleanor Mann School of Nursing Faculty Publications and Presentations

Breastfeeding is often considered principally a biological issue but success is impacted by the socio-ecological environment of the lactating parent. Identifying current attitudes towards breastfeeding is essential in the effort toward normalizing breastfeeding in communities, including university campuses. The study explored campus community knowledge, awareness, and attitudes about breastfeeding, including available resources and applicable laws on two university campuses in the southern United States. This cross-sectional, self-reporting study utilized the Iowa Infant Feeding Attitude Scale and an adaptation of the Breastfeeding Behavior Questionnaire to survey a convenience sample. Results revealed decreased awareness of protective laws, availability of private lactation space, …

Studies In The Ancient Israelite Cult Of Dead Kin, Joshua Jacobs

World Languages, Literatures and Cultures Undergraduate Honors Theses

In 1986, Klaas Spronk published a monograph titled, Beatific Afterlife in Ancient Israel and in the Ancient Near East. Although many have criticized Spronk’s central thesis, his study began a new era in biblical scholarship on death and the afterlife in ancient Israel. More specifically, it sparked renewed interest in the study of the relationship between the living and the dead. Just three years after Spronk’s work, Theodore J. Lewis published his own study, Cults of the Dead in Ancient Israel and Ugarit (1989). Lewis affirmed and developed evidence for one of the foundational aspects of Spronk’s book: in …

Excitation Power Dependence Of Blinking In Copper-Indium-Sulfide Quantum Dots, Nicholas Chambers

Physics Undergraduate Honors Theses

Under continuous excitation, quantum dots exhibit random transitions between fluorescent ON states and non-fluorescent OFF states --- a phenomenon known as blinking. A physical description of the mechanism responsible for blinking that applies broadly to many types of quantum dots remains under debate. We study the blinking behavior of the non-toxic CuInS2 quantum dot, a system that has seen little investigation at the single-particle level. In particular, the optical properties of CuInS2 quantum are often improved by adding ZnS to the nanoparticles, but this addition leads to complex structural-optical property relationships that are even less understood. To probe the relationship …