Digital Commons Network^™

Transcriptomic Identification And Developmental Mapping Of Nrg3b Expression In Zebrafish, Elham Tarahomi, Nuray Soğünmez Erdoğan

Turkish Journal of Biology

Background/aim: Neuregulin 3 (NRG3) is an epidermal growth factor-like ligand that is involved in neuronal circuit formation in mammals. However, the expression profile of its zebrafish ortholog, nrg3b, remains poorly defined. The transcriptomic analyses of zebrafish sco-spondin mutants, which display alterations in their neurodevelopmental pathways, have indicated potential dysregulation of Nrg3b. Guided by these insights, this study aimed to characterize the temporal and spatial expression patterns of nrg3b in vivo in embryonic and adult zebrafish.

Materials and methods: Publicly available RNA-seq data from heterozygous and maternal-zygotic zebrafish sco-spondin mutants at 5, 15, and 30 days postfertilization (dpf) were analyzed to …

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Turkish Journal of Biology

No abstract provided.

Symmetric Orthogonalization And Probabilistic Weights In Resource Quantification, Gökhan Torun

Turkish Journal of Physics

Transforming nonorthogonal bases into orthogonal ones often compromises essential properties or physical meaning in quantum systems. Here, we demonstrate that Löwdin symmetric orthogonalization (LSO) outperforms the widely used Gram–Schmidt orthogonalization (GSO) in characterizing and quantifying quantum resources, with particular emphasis on coherence and superposition. We employ LSO both to construct an orthogonal basis from a nonorthogonal one and to obtain a nonorthogonal basis from an orthogonal set, thereby mitigating ambiguity related to the basis choice in defining quantum coherence. Unlike GSO, which depends on the ordering of input states, LSO applies a symmetric transformation that treats all vectors equally and …

Optical Textures Of A Uniform Liquid Crystal Lattice: Monte Carlo Simulations With Newton Colors And Mueller Matrix Analysis, Yakup Emül

Turkish Journal of Physics

The optical textures of a uniform liquid crystal (LC) molecule lattice structure were explored through Monte Carlo (MC) simulations, combined with Mueller matrix (MM) formalism and Newton’s color theory. These simulations utilized a Lebwohl-Lasher (LL) type interacting LC lattice under periodic boundary conditions, generating ensemble-averaged configurations at two temperature regimes (kBT = 0.9 and 1.2), corresponding respectively to nematic and isotropic states. These configurations were then incorporated into the MM framework to evaluate the polarization states of transmitted light. To visually interpret the resulting interference phenomena, we propose a new visualization method based on a modern interpretation of Newton’s color …

The 1/C Expansion Of General Relativity In A 3+1 Formulation, Revisited, Mahmut Elbi̇stan

Turkish Journal of Physics

We study the 1/c expansion of general relativity within a formulation that is compatible with both the Arnowitt-Deser-Misner and the Kol-Smolkin decompositions. The Einstein-Hilbert action takes a common form for those decompositions as they are dual to each other. We first develop a method to expand this generic form and then push the expansion up to c−3 order within this novel approach. Next, we apply our technique to the Arnowitt-Deser-Misner decomposition and expand it up to c−3 order explicitly. In order to demonstrate the applicability of our method and to highlight the duality at the level of expansion, we also …

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Turkish Journal of Medical Sciences

No abstract provided.

Individualized Respiratory Exercise Device Originated In Türkiye: Design, Prototype, And First Results, Çi̇ğdem Emi̇rza Ci̇lbi̇r, Özge Ertan Harputlu, Hi̇kmet Uçgun, Büşra Ülker Ekşi̇, Sarper Kaya, Esen Kiyan, Gökşen Kuran Aslan, Buket Akinci

Turkish Journal of Medical Sciences

Background/aim: Respiratory muscle training (RMT) and breathing exercises are crucial components in cardiopulmonary rehabilitation. RMT includes inspiratory muscle training (IMT) and expiratory muscle training (EMT); however, existing RMT devices typically support only one of these. Incentive spirometers, which also provide visual feedback for breathing exercises, are frequently used. Achieving an RMT program requires multiple devices, which increases both the cost and complexity of the training regimen. This study aimed to design, calibrate, and test a novel individualized respiratory exercise device that integrates both IMT and EMT functions into a single unit, thereby offering a cost-effective, user-friendly alternative for comprehensive cardiopulmonary …

Cd20 Molecule Deficiency And Carrier Frequency: A Village-Based Screening Study, Ebru Sümen, Mehmet Ali̇ Karaselek, Serkan Küççüktürk, Tuğçe Duran, Büşra Yüksel, Mustafa Gençeli̇, Ayşe Sümeyra Engi̇n, Muhammed Furkan Erden, Tuğba Esra Pekcandanoğlu, Bi̇lal Bostan, Mahmut Esad Yurtseven, Nazi̇re Nur Onat, Şükrü Nai̇l Güner, Sevgi̇ Keleş, İsmai̇l Rei̇sli̇

Turkish Journal of Medical Sciences

Background/aim: CD20 deficiency is an autosomal recessive inborn error of immunity (IEI), and the only known affected individual worldwide has been under follow-up in our clinic. Because the consanguineous parents of the index patient are putative carriers, we hypothesized that additional individuals with reduced CD20 expression might exist within their village population. This study aimed to evaluate clinical features associated with IEI and to identify individuals displaying CD20 mean fluorescence intensity (MFI) patterns consistent with putative carrier status, while also providing appropriate genetic counseling.

Materials and methods: This cross-sectional screening study was conducted in December 2024 in Çukurbağ village. Participants …

The Impact Of Covid-19 On Healthcare Workers: Risk Factors, Sources Of Infection, And Sickness Absenteeism, Ezgi̇ Gülten, Güle Çinar, İrem Akdemi̇r, Eli̇f Muki̇me Saricaoğlu, İlkay Taşdan, Emi̇ne Atmaca, Si̇bel Kaymakçi, Fatma Şanal, Di̇lek Sevi̇m Akdaş, Arzu Büyüm, Gülşah Kocaali̇, Safi̇ye Tarakçi, Ati̇lla Hali̇l Elhan, Mehmet Serhat Bi̇rengel, Kemal Osman Memi̇koğlu, Alpay Azap

Turkish Journal of Medical Sciences

Background/aim: Healthcare workers (HCWs) face increased risks of COVID-19 infection due to occupational exposure. Understanding infection sources, risk factors, and workforce losses is crucial for mitigating these impacts in future pandemics. This study aimed to evaluate the risk factors, infection sources, and sickness absenteeism among HCWs diagnosed with SARS-CoV-2 infection, providing insights to enhance infection control strategies.

Materials and methods: The study included 2153 HCWs diagnosed with SARS-CoV-2 between March 2020 and February 2023 at a tertiary care hospital in Türkiye. Demographic, clinical, and professional characteristics, personal protective equipment (PPE) usage, infection sources, and vaccination data were analyzed. Statistical analyses …

Preventing Spinal Muscular Atrophy Through The National Premarital Screening Program In Türkiye: An Economic Comparison With Treatment Costs, Gamze Dur, Gülcan Teci̇rli̇, Nurullah Okumuş

Turkish Journal of Medical Sciences

Background/aim: Spinal muscular atrophy (SMA) is a severe neuromuscular disorder with high treatment costs and significant psychosocial burden. In 2021, Türkiye launched a national premarital SMA carrier screening program integrated with in vitro fertilization (IVF) with preimplantation genetic testing (PGT) services for couples identified as carriers. This study aimed to compare the costs associated with the carrier screening and prevention program versus a no-screening (treatment-only) scenario.

Materials and methods: A cost comparison model was developed using data from the Turkish Statistical Institute, the Ministry of Health, and the Social Security Institution. The annual costs of SMA treatment (with nusinersen and …

Effects Of Hydro- And Nano-Priming Treatments On Seed Germination And Metabolism In Sugar Beet (Beta Vulgaris L.), Sarah Jorjani, Ömer Can Ünüvar, Songül Gürel, Ekrem Gürel

Turkish Journal of Botany

This study examined the effects of hydropriming and nanopriming on the germination and physiological parameters of sugar beet seeds. Seeds were treated with distilled water as a traditional method and with TiO2 nanoparticle solutions at concentrations of 5, 10, and 15 ppm as an advanced method. Seeds were soaked for 3, 6, and 9 h, followed by postpriming maintenance for 10 and 45 days. T he results indicated no statistically significant differences in germination rates between the control and primed groups. Both priming methods markedly increased alpha-amylase activity and chlorophyll content, indicating improved metabolic and photosynthetic potential. Notably, nanopriming for …

Modeling Global Ecological Niche Shifts Of Osyris Spp. Under Climate Change Scenarios: Conservation Priorities For A Threatened Genus, Meng Ting-Yao, Han Shun-Long, He Xiang-Tian, Wu Ya-Ni, Fengjuan Mou

Turkish Journal of Botany

The genus Osyris L. comprises ecologically and economically important evergreen shrubs or small trees, with particular African species currently threatened by unsustainable exploitation. This study projected potential ecological niche shifts for Osyris under four Shared Socioeconomic Pathways (SSPs) using digitized herbarium specimen localities and 20 environmental variables. The genus currently occupies a broad range between 41.32°N–34.85°S latitude and 9.27°W–109.03°E longitude, at elevations from 0 to 3900 m. High-suitability areas cluster primarily in the European-Mediterranean region, eastern/southern Africa, western South America, and Southeast Asia. Projections indicate a significant decline in high-suitability area under all SSP scenarios (SSP126, SSP245, SSP370, SSP585) compared …

Taxonomic Significance Of Stem And Leaf Anatomy And Pollen And Seed Micromorphological Characters In The Papaver (Poppy) Sect. Rhoeadium From Türkiye, Esengül Özkaymakoğlu, Osman Tugay, Yavuz Bülent Köse, Deni̇z Ulukuş, Bayram Atasagun, Meti̇n Armağan, Ferhat Celep

Turkish Journal of Botany

The poppy (Papaver) has beautiful flowers that attract the attention of not only taxonomists but also the public. However, it also presents several taxonomic problems. This study examines 13 taxa of Papaver sect. Rhoeadium, including the following species native to Türkiye: P. purpureomarginatum, P. dubium subsp. dubium, P. dubium subsp. laevigatum, P. arachnoideum, P. arenarium, P. commutatum subsp. euxinum, P. guerlekense, P. rhopalothece, P. stylatum, P. clavatum, P. syriacum, P. rhoeas, and P. postii. Plant specimens were collected from natural populations, and anatomical investigations were carried out on stem and leaf cross-sections. Pollen and seed features were examined using both …

Habitat Diversity Or Altitudinal Gradient? Which Factor Better Explains Ground Beetle (Coleoptera: Carabidae) Biodiversity? A Case Study From Davraz Mountain (Isparta, Türkiye), Ebru Ceren Fi̇dan, Ali̇ Gök

Turkish Journal of Zoology

Ground beetle (Carabidae) species diversity and spatial distribution were surveyed  across five habitat types along an elevational gradient on Davraz Mountain, a  biogeographical transition area in southwestern Türkiye. The analyses showed that  habitat heterogeneity—particularly soil moisture and texture—exerts a stronger  influence on carabid diversity than elevation. Sørensen’s and Jaccard similarity  indices showed strong faunal overlap between some sampling areas, while  multivariate principal components and canonical correspondence analyses verified  distinct environmental gradients influencing community structure. Diversity indices  indicated varying levels of species richness and evenness across sampling areas.  The data highlight the importance of fine-scaled habitat features in driving ground  beetle …

Geochemical And Isotopic Signatures Of Ultramafic-Hosted Magnesite Deposit: A Case Study Of The Edige Region (Ankara-Central Anatolia), Betül Koca, Eli̇f Akiska, Zehra Karakaş, Si̇nan Akiska

Turkish Journal of Earth Sciences

The magnesite deposit of the Edige region in Ankara-Elmadağ District of Türkiye is hosted in serpentinite/serpentinized ultramafic rocks, which are mainly harzburgite and dunite. Mineralogical and petrographic studies have shown that ultramafic rocks are composed of serpentine, olivine, and pyroxene with serpentinization preceding magnesite formation. The X-ray diffraction results reveal that dolomite, quartz, calcite, and clay minerals are the main minerals in magnesite samples from serpentinite/serpentinized ultramafic units. Olivine, pyroxene, serpentine, chromite, and iron oxide minerals are also present. Scanning electron microscopy and energy dispersive spectrometry results show that magnesite in rhombohedral and cryptocrystalline forms is the dominant mineral accompanied …

Bioerosion And Encrustation As Paleoenvironmental Indicators In Upper Cretaceous Corals, Aruma Formation, Saudi Arabia, Abdelbaset S. El-Sorogy, Huriye Demi̇rcan, Khaled Al-Kahtany, Taisser Zumlot, Talal Alharbi, Mohamed Tawfik

Turkish Journal of Earth Sciences

This study documents and interprets bioerosion and encrustation traces on Upper Cretaceous scleractinian corals from the Hajajah Member of the Aruma Formation in northern Khashm Buwaibiyat, central Saudi Arabia. Fieldwork in 2023 and 2024 involved detailed bed-by-bed stratigraphic logging, ichnological assessment, and fossil collection across marl and limestone units. A total of 213 coral specimens with bioerosional features were analyzed, leading to the identification of 10 ichnospecies across 5 ichnogenera, including Gastrochaenolites, Entobia, Caulostrepsis, Rogerella, and Labyrintichnus. These traces reflect a range of ethological categories, primarily domichnia, indicating permanent dwelling structures by polychaetes, sponges, bivalves, barnacles, and crustaceans. The Hajajah …

Identification Of A Previously Unrecognized Listric Fault Beneath The Acıpayam Graben: Insights From Integrated Dinsar And Field Observations, Semi̇h Eski̇

Turkish Journal of Earth Sciences

The 20 March 2019 Acıpayam earthquake (Mw 5.7) offers a valuable opportunity to examine the complex seismotectonic behavior of the Fethiye-Burdur Fault Zone (FBFZ), a transtensional structure in southwestern Türkiye. This study integrates field observations and focal mechanism data with differential interferometric synthetic aperture radar (DInSAR) analysis to reassess the geometry of the causative fault. In contrast to previously proposed northeast-dipping blind fault models, the data obtained in this study indicate a southwest-dipping listric normal-fault system centered on the Yeniköy Fault, projecting beneath alluvial cover. Vertical displacement maps from Sentinel-1 show coseismic subsidence up to 5.8 cm and broader postseismic …

Geochemical Characteristics And Ree Potential Of Red Soils In The Seydişehir–Akseki Region (Türkiye), Muazzez Çeli̇k Karakaya, Necati̇ Karakaya, Aydin Rüşen, Cem Saraç

Turkish Journal of Earth Sciences

The karst-type bauxite deposits located in southwestern Türkiye represent the most significant bauxite resources in the country. Surrounding these bauxite deposits are widespread red soil deposits of varying sizes, developed over lithologically diverse rocks. This study aims to investigate the origin of these red soils, which were examined in two distinct groups based on their spatial relationship to the underlying geology. The first group of red soils is found on or within the fractures of karstic limestones, while the second group is primarily located in proximity to ophiolitic rocks. The investigation focused on the physical properties, as well as the …

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Turkish Journal of Electrical Engineering and Computer Sciences

No abstract provided.

Exploitation Prioritization And Residual Risk Assessment Based On Hybrid Mcdm Model, Zibo Wang, Yaofang Zhang, Sicai Lv, Yingzhou Wang, Hongri Liu, Bailing Wang

Turkish Journal of Electrical Engineering and Computer Sciences

Exploitation is one of the most significant ways to launch attacks using vulnerabilities. The increasing number of vulnerabilities and limited allocation of security resources make it impossible to eliminate all exploitations. Because not every vulnerability can be fixed, it is necessary to rank exploitations and subsequently assess the residual risk, which is defined as the remaining threat potential after each elimination. In this paper, a structured and flexible decision support framework based on a hybrid multicriteria decision-making model is proposed for prioritizing exploitations and assessing residual risk. Metrics are treated as criteria in the model. The hybrid model is developed …

A Deep Learning-Based Real-Time No-Reference Image Decolorization Network With Perceptual Preservation, Mengjuan Zhao, Yitao Liang, Weiya Shi, Juan Xia

Turkish Journal of Electrical Engineering and Computer Sciences

Currently, grayscale images are preferred as input data for some specific vision tasks. Decolorization is the transformation of a color image into a grayscale image. Efficient decolorization algorithms can improve the overall task efficiency, while perceptual preservation in decolorization can provide more information for further processing. In recent research, traditional methods focus on preserving contrast or detail information with little attention to perceptual features. Deep-learning methods are beginning to consider perceptual preservation, but they run inefficiently. In addition, the decolorization methods lack the optimal target grayscale images for reference. Therefore, we propose a new deep learning-based real-time no-reference decolorization network …

Noninvasive Condition Monitoring For Eccentricity Fault Detection In Large Hydro Generators, Atena Tazikeh Lemeski, Di̇dem Tekgün, Ozan Keysan, Kemal Leblebi̇ci̇oğlu, Murat Göl

Turkish Journal of Electrical Engineering and Computer Sciences

Eccentricity faults in electric machines remain a critical concern, as they generate uneven magnetic forces that increase vibration and noise, ultimately raising the risk of premature motor failure. This study proposes a method for the early detection of dynamic eccentricity (DE) faults in hydropower plants through an advanced optimization-based parameter identification technique integrated with finite element analysis (FEA). Finite element modeling (FEM) is first used to analyze an existing salient-pole synchronous generator (SPSG) from a hydroelectric power plant in Türkiye. The effects of DE faults on the SPSG’s magnetic equivalent circuit parameters are then examined under various fault severities. A …

A Deep Learning Model For Accurate Tomato Leaf Disease Identification, Maheen Shahzad, Muhammad Abdullah Javed, Erum Ashraf, Hafiz Ishfaq Ahmad, Sabeen Masood

Turkish Journal of Electrical Engineering and Computer Sciences

Recent advances in machine learning and deep learning have greatly improved how we detect plant diseases, making diagnoses more accurate, faster, and easier to scale. However, many existing solutions depend on large, pretrained models that need powerful hardware, which limits their use in the field, especially in areas with limited resources. To tackle this, we designed a custom lightweight convolutional neural network (CNN) built from scratch using 20,000 carefully selected images from the PlantVillage tomato dataset. Our model uses Squeeze-and-Excitation (SE) blocks and Swish activation functions to boost performance, reaching an accuracy of 97.7% while using far fewer computing resources …

Influence Of Sinr And Noise Variance On Outage Probability For Mimo-Noma System In 5g And Beyond, Sadiq Ur Rehman, Jawwad Ahmed, Muhammad Zubair, Syed Sajjad Hussain Rizvi

Turkish Journal of Electrical Engineering and Computer Sciences

Nonorthogonal multiple access (NOMA) communication presents a promising solution to the limitations of traditional orthogonal multiple access techniques, offering potential improvements in achievable rates. Multiple-input multiple-output (MIMO), when combined with NOMA (MIMO-NOMA), further enhances these benefits by leveraging the diversity advantages of multiple antennas. Looking ahead, the future of wireless communication hinges on deploying heterogeneous networks (HetNets), facilitating the coexistence of various wireless access networks in a hierarchical fashion. However, the advent of 5G and 6G communications brings shorter channel coherence times, rendering channel reciprocity unreliable. Consequently, conventional channel estimation methods relying on uplink (UL) pilots for downlink (DL) transmission …

A Novel Approach To Maximum Weighted Traffic Flow Method For Effective Signal Control, Zülal Hi̇lal Yildiz Budak, Seyi̇t Alperen Çeltek, Aki̇f Durdu

Turkish Journal of Electrical Engineering and Computer Sciences

Traffic signal management is a critical challenge due to its environmental, economic, and public health impacts. The maximum weighted flow method (MaxWeightedFlow) was developed to optimize traffic flow at isolated and coordinated urban intersections. This study proposes a new method, the novel MaxWeightedFlow, which includes two key strategies to enhance the classical approach. The first strategy reduces computational burden by estimating vehicle approach times based on instantaneous speeds, improving real-time performance. The second employs regression analysis to optimize the alpha parameter, representing the vehicle waiting coefficient. The proposed approach, the novel MaxWeightedFlow, was evaluated using real-world traffic data from Kilis, …

Improving Rail System Signaling Efficiency Through Ai-Based Driving Profile Generation: A Comparative Performance Analysis, Mehmet Taci̇ddi̇n Akçay, Abdurrahi̇m Akgündoğdu

Turkish Journal of Electrical Engineering and Computer Sciences

In this study, a dataset comprising 3600 discrete operational snapshots (rather than continuous time-series data) derived from real-field operations is used to obtain a high-accuracy driving profile equation using a second-degree Polynomial Regression method. This equation demonstrates the model’s interpretability. The performance metrics obtained with the second-degree polynomial regression model’s equation are as follows: a coefficient of determination (R2) of 0.84, a Pearson Correlation Coefficient of 0.91, and an RMSE of 11.13. These results indicate the effectiveness of artificial intelligence-based approaches in improving the efficiency of the railway signaling system. The same dataset is also utilized with other machine learning …

Distribution System Reliability Evaluation Considering Protection Coordination Using Petri Nets, Rani Kumari, Bhukya Krishna Naick

Turkish Journal of Electrical Engineering and Computer Sciences

Maintaining reliable and high-quality power delivery becomes increasingly complex with expanding power grids. The lack of protection coordination poses a significant threat, compromising overall system reliability. This research addresses this challenge by proposing a method for coordinating protective devices within the distribution system, specifically during network faults. The proposed approach utilizes a stochastic timed Petri net (STPN) based methodology to model protective device coordination across various fault scenarios. This technique effectively captures the dynamic behavior and interactions of protective equipment, allowing for the anticipation of potential disturbances. This proactive insight facilitates preventative measures to address prewarning situations, thereby preventing cascading …

The Variation Of Eigenvalues Of The Two-Dimensional Magnetic Schrödinger Operator With Respect To The Angle Of A Flat Sector, Araz R. Aliev, Elshad H. Eyvazov

Turkish Journal of Mathematics

A two-dimensional Schrödinger operator with a spherically symmetric electric potential and an Aharonov Bohm magnetic field in a circular sector under Neumann boundary conditions is considered. The intervals of the angular variation of the flat region are found, where the eigenvalues of the Neumann problem for the Schrödinger operator with a spherically symmetric electric potential strictly decrease monotonically in the Aharonov-Bohm magnetic field.

Some Methods For Finding The Number Of Partitions Of N With M−Parts, P(N, M), Yusuf Soyvural, Ali̇ Bülent Eki̇n

Turkish Journal of Mathematics

P(n, m) denotes the number of partitions of n with m parts, while P_m(n) denotes the number of partitions of n with parts at most m. It is a well-known result that the number of partitions of n ≥ 0 into m or fewer parts is equal to P_m(n). In the literature, there are some results for P(n, m) and P_m(n) for some values of m. In this work, we give more compact results for P(n …

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Turkish Journal of Mathematics

No abstract provided.