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Full-Text Articles in Entire DC Network
Biodegradability Of Degradable Mulching Film In A Laboratory-Controlled Composting Test, Xuemei Zhang, Yaxi Huang, Deqiang Li, Zicheng Wen, Baoxun Sui, Zhiyong Liu
Biodegradability Of Degradable Mulching Film In A Laboratory-Controlled Composting Test, Xuemei Zhang, Yaxi Huang, Deqiang Li, Zicheng Wen, Baoxun Sui, Zhiyong Liu
Turkish Journal of Chemistry
A series of degradable films was prepared, and 2 formulas of polyethylene (PE) films with the highest degradable performance were experimentally determined. These films contained 3.43% and 0.44% stearate, and were denoted as PE-3 and PE-4, respectively. Their biodegradability was studied in a laboratory-controlled composting test using ordinary PE film (OPEF) as a control. Contrast composting experiments indicated that the biodegradability of untreated samples was very low, and that the biodegradation rates of PE films after natural aging were significantly higher. FT-IR analysis showed that OPEF changed little after the composting experiment, and that PE-3 and PE-4 showed a carbonyl …
Synthesis Of New N-[3-(Benzo[D]Thiazol-2-Yl)-4-Methylthiazol-2(3h)-Ylidene] Substituted Benzamides, Aamer Saeed, Hummera Rafique
Synthesis Of New N-[3-(Benzo[D]Thiazol-2-Yl)-4-Methylthiazol-2(3h)-Ylidene] Substituted Benzamides, Aamer Saeed, Hummera Rafique
Turkish Journal of Chemistry
A series of novel N-[3-(2-benzo[d]thiazol-2-yl)-4-methylthiazol-2(3H)-ylidene] substituted benzamides (2a--k) were efficiently synthesized by heterocyclization of the corresponding 1-(benzo[d]thiazol-2-yl)-3-aroylthioureas (1a--k). The cyclization was achieved by the reaction of \alpha-bromoacteone produced in situ using bromine in dry acetone in the presence of triethylamine.
Expression Of Cyclin D1, P27, P21, Bcl-2, And P53 In Laryngeal Squamous Cell Carcinoma And An Investigation Of The Correlation With Conventional Prognostic Factors, Gülçi̇n Şi̇mşek, Ünsal Han, Bi̇nnur Önal, Fatma Fulya Köybaşioğlu, İstemi̇han Akin, Muharrem Dağli
Expression Of Cyclin D1, P27, P21, Bcl-2, And P53 In Laryngeal Squamous Cell Carcinoma And An Investigation Of The Correlation With Conventional Prognostic Factors, Gülçi̇n Şi̇mşek, Ünsal Han, Bi̇nnur Önal, Fatma Fulya Köybaşioğlu, İstemi̇han Akin, Muharrem Dağli
Turkish Journal of Medical Sciences
Because it is a multistep process, in carcinogenesis it is necessary to determine key genes such as cyclin D1, p27, p21, bcl-2, and p53 that are responsible for uncontrolled proliferation and other mechanisms. The aim of this study was to examine the correlation between the anomalous accumulation of these proteins and the prognosis of laryngeal carcinomas. Materials and methods: In our study, cyclin D1, p27, p21, bcl-2, and p53 expressions were analyzed immunohistochemically in laryngeal squamous cell carcinomas, and the findings were compared with conventional prognostic parameters such as patient age, sex, tumor localization and diameter, tumor differentiation, lymph node …
Leptin Regulation Of Pubertal Maturation In Intact And Pinealectomized Female Rats, Emi̇ne Kaçar, Si̇ğnem Eyuboğlu Di̇nç, Bayram Yilmaz, Haluk Keleşti̇mur
Leptin Regulation Of Pubertal Maturation In Intact And Pinealectomized Female Rats, Emi̇ne Kaçar, Si̇ğnem Eyuboğlu Di̇nç, Bayram Yilmaz, Haluk Keleşti̇mur
Turkish Journal of Medical Sciences
To explore the roles of leptin and melatonin in early pubertal maturation. Materials and methods: Wistar female rats were used as experimental animals. Leptin was subcutaneously infused for 28 days through osmotic minipumps starting from postnatal day 15 (preweaning). Pinealectomy was performed on postnatal day 21 (weaning), and the animals were decapitated when estrus was detected by vaginal smearing. Results: Chronic preweaning, by peripheral infusion of leptin through subcutaneous routes, advanced the onset of puberty in leptin-treated sham and pinealectomized groups as determined by vaginal opening, while causing no significant change in serum estradiol levels and uterus weight. Mean body …
A Potential Association Between The Number Of Ca Repeats In The Promoter Region Of The Adamts9 Gene With Lymphatic Metastasis Of Breast Cancer, Mi̇kdat Bozer, Fatma Aşik, Muradi̇ye Acar, Hacer Haltaş, Si̇bel Yeni̇dünya, Meti̇n Canbal, Vehap Topçu, Muhammet Ramazan Yi̇ği̇toğlu, Mehmet Gündüz, Esra Gündüz, Satoshi Hirohata, Kadi̇r Demi̇rcan
A Potential Association Between The Number Of Ca Repeats In The Promoter Region Of The Adamts9 Gene With Lymphatic Metastasis Of Breast Cancer, Mi̇kdat Bozer, Fatma Aşik, Muradi̇ye Acar, Hacer Haltaş, Si̇bel Yeni̇dünya, Meti̇n Canbal, Vehap Topçu, Muhammet Ramazan Yi̇ği̇toğlu, Mehmet Gündüz, Esra Gündüz, Satoshi Hirohata, Kadi̇r Demi̇rcan
Turkish Journal of Medical Sciences
We investigated the effect of the number of cytosine-adenine (CA) repeats in the ADAMTS9 promoter region on breast cancer lymphatic metastasis. Materials and methods: Thirty-one postoperative breast cancer patients were selected and examined retrospectively. The patients were classified into 2 groups: metastatic or nonmetastatic. Thirty healthy women were selected as the control group, and their peripheral blood was obtained. Following DNA isolation from the cancer tissue specimens and peripheral blood, the promoter region of the ADAMTS9 gene was directly sequenced and the number of CA repeats was determined. Results: The number of CA repeats ranged between 19 and 21 in …
In Vitro And In Silico Characterization Of Solanum Lycopersicum Wound-Inducible Proteinase Inhibitor-Ii Gene, Faiza Munir, Syed Muhammad Saqlan Naqvi, Tariq Mahmood
In Vitro And In Silico Characterization Of Solanum Lycopersicum Wound-Inducible Proteinase Inhibitor-Ii Gene, Faiza Munir, Syed Muhammad Saqlan Naqvi, Tariq Mahmood
Turkish Journal of Biology
Plant proteinase inhibitors (PIs) are antimetabolic defensive proteins conferring resistance in plants against a variety of competing organisms such as bacteria, viruses, fungi, attacking nematodes, and insects. In the fields of plant biochemistry and molecular genetics research, tremendous success has been achieved in generating transgenic crops that have defensive approaches against biotic challenges. In this study, in vitro and in silico analysis was carried out for a wound-inducible PI-II gene isolated from 4 selected varieties (Roma, Nagina, Moneymaker, and Rio Grande) of Solanum lycopersicum L. Around 684 bp of PI-II gene was amplified, sequenced, translated, modeled to protein structure, and …
Compositional Studies And Antioxidant Potential Of Albizia Lebbeck (L.) Benth. Pods And Seeds, Muhammad Zia-Ul-Haq, Shakeel Ahmad, Mughal Qayum, Sezai̇ Erci̇şli̇
Compositional Studies And Antioxidant Potential Of Albizia Lebbeck (L.) Benth. Pods And Seeds, Muhammad Zia-Ul-Haq, Shakeel Ahmad, Mughal Qayum, Sezai̇ Erci̇şli̇
Turkish Journal of Biology
Albizia lebbeck (L.) Benth. is an important medicinal tree found in Pakistan. The present study evaluates the composition and antioxidant potential of various parts of the A. lebbeck plant. Compositional studies indicated carbohydrates as major components while saponin was found as a major antinutrient in both pods and seeds. Potassium was found in the highest amount and copper in the lowest. The amino acid profile indicated that arginine and lysine are present in excessive amounts in seeds while glutamic acid and aspartic acid are present in the highest concentrations in pods. While the linoleic acid was detected as the major …
The Effect Of 3-Methylcholanthrene And Butylated Hydroxytoluene On Glycogen Levels Of Liver, Muscle, Testis, And Tumor Tissues Of Rats, Fi̇kri̇ye Polat, Egemen Dere, Eylem Gül, İzzet Yelkuvan, Öztürk Özdemi̇r, Günsel Bi̇ngöl
The Effect Of 3-Methylcholanthrene And Butylated Hydroxytoluene On Glycogen Levels Of Liver, Muscle, Testis, And Tumor Tissues Of Rats, Fi̇kri̇ye Polat, Egemen Dere, Eylem Gül, İzzet Yelkuvan, Öztürk Özdemi̇r, Günsel Bi̇ngöl
Turkish Journal of Biology
This study examined the effects of separate and combined applications of 3-methylcholanthrene, a polycyclic aromatic hydrocarbon and potent carcinogenic agent, and butylated hydroxytoluene, the antioxidant food additive, on the glycogen levels of liver, muscle, testis, and tumor tissues in rats. Adult male Wistar albino rats weighing 100-110 g at 8 weeks of age were used in this study. This study consisted of a control group (n = 9) and 3 different experiment groups in which rats were chronically treated with 3-methylcholanthrene (n = 9) or butylated hydroxytoluene (n = 11) or a combination of these agents (n = 14). Rats …
Purification Of Antioxidant Protein Isolated From Peganum Harmala And Its Protective Effect Against Ccl4 Toxicity In Rats, Hanaa Ahmed, Helal Abu Elzahab, Gamia Alswiai
Purification Of Antioxidant Protein Isolated From Peganum Harmala And Its Protective Effect Against Ccl4 Toxicity In Rats, Hanaa Ahmed, Helal Abu Elzahab, Gamia Alswiai
Turkish Journal of Biology
The present study was conducted to determine the protective effect of the purified protein from seeds of Peganum harmala against carbon tetrachloride (CCl_{4})-induced toxicity in male albino rats. The purification steps included ammonium sulfate fractionation and chromatography on DEAE-cellulose, CM-Sepharose, and Superdex 75 columns. The molecular mass of the purified protein was 132 kDa by gel filtration technique; it consisted of 2 subunits with molecular masses of 30.199 kDa and 38.018 kDa by SDS-PAGE. Results of the dose-dependent experiment with purified protein prior to CCl_4 administration were higher at 4 mg/kg body weight. The antioxidant activity of the purified protein …
Comparison Of The Volatiles Of Daphne Pontica L. And D. Oleoides Schreber Subsp. Oleoides Isolated By Hydro- And Microdistillation Methods, İlhan Gürbüz, Betül Demi̇rci̇, Gerhard Franz, Kemal Hüsnü Can Başer, Erdem Yeşi̇lada, Fati̇h Demi̇rci̇
Comparison Of The Volatiles Of Daphne Pontica L. And D. Oleoides Schreber Subsp. Oleoides Isolated By Hydro- And Microdistillation Methods, İlhan Gürbüz, Betül Demi̇rci̇, Gerhard Franz, Kemal Hüsnü Can Başer, Erdem Yeşi̇lada, Fati̇h Demi̇rci̇
Turkish Journal of Biology
Aerial parts of Daphne pontica were collected from Ilgaz-Çankırı, and D. oleoides subsp. oleoides was collected from 2 different localities (Ayrancı-Karaman and Ilgaz-Çankırı) in Turkey. The samples were subjected to hydrodistillation and microdistillation. The resulting volatile samples were analyzed both by gas chromatography (GC) and gas chromatography-mass spectrometry (GC-MS), respectively. The main components for D. pontica were identified as hexahydrofarnesyl acetone (8.6%), carvacrol (8.5%), dihydroedulane II (4.7%), (E)-geranyl acetone (4.6%), and thymol (4.5%), while nonacosane (42.5% and 27.2%), hexadecanoic acid (24.4% and 20.0%), phytol (12.3%), and carvacrol (5.0%) were identified as the main components of D. oleoides subsp. oleoides obtained …
Concentration Of Sodium Dodecyl Sulfate Used In Occlusion Body Extraction Affects Spodoptera Littoralis Nucleopolyhedrovirus Biological Activity, Hi̇lal Susurluk, Umut Toprak, Mehmet Oktay Gürkan
Concentration Of Sodium Dodecyl Sulfate Used In Occlusion Body Extraction Affects Spodoptera Littoralis Nucleopolyhedrovirus Biological Activity, Hi̇lal Susurluk, Umut Toprak, Mehmet Oktay Gürkan
Turkish Journal of Biology
Efficacy of a baculovirus as a biological control agent is evaluated according to biological parameters, median lethal dose (LD_{50}) of the virus, and median lethal time (LT_{50}) of infected larvae. Sodium dodecyl sulfate (SDS) is commonly used in concentrations of 0.1%-1% to extract infective units of the baculoviruses, occlusion bodies (OBs), from infected cadavers. Although several studies have shown disruption of OB structure by SDS, the effects of SDS concentrations on baculovirus biological parameters are not well known. Indeed, it is essential to detect the optimum SDS concentration for OB extraction to compare the activity of baculoviruses accurately. In our …
Partial Purification And Characterization Of Cellulases From Digestive Tracts Of The African Giant Snail (Achatina Achatina), Paul Chijioke Ozioko, Sabinus Oscar Onyebuchi Eze, Ferdinand Chiemeka Chilaka
Partial Purification And Characterization Of Cellulases From Digestive Tracts Of The African Giant Snail (Achatina Achatina), Paul Chijioke Ozioko, Sabinus Oscar Onyebuchi Eze, Ferdinand Chiemeka Chilaka
Turkish Journal of Biology
Crude cellulase was extracted from the digestive tracts of 30 mature Achatina achatina and subjected to a 3-step purification process of ammonium sulfate precipitation, dialysis, and gel filtration. This purification procedure gave 3 prominent enzyme activity peaks that coincided with protein peaks and were designated A, B, and C, corresponding to high endoglucanase, \beta-glucosidase, and total cellulase activities, respectively. Temperature optima of 50 °C were recorded for \beta-glucosidase and total cellulase while 45 °C was recorded for endoglucanase. Total cellulase, glucosidase, and endoglucanase showed maximum activities at pH values of 5.5, 4.5, and 7.5, respectively. Kinetic studies show that total …
Pcr Screening For The Surfactin (Sfp) Gene In Marine Bacillus Strains And Its Molecular Characterization From Bacillus Tequilensis Nios11, Seema Porob, Sagar Nayak, Areena Fernandes, Priyanka Padmanabhan, Balkrishna Arjun Patil, Ram Murti Meena, Nagappa Ramaiah
Pcr Screening For The Surfactin (Sfp) Gene In Marine Bacillus Strains And Its Molecular Characterization From Bacillus Tequilensis Nios11, Seema Porob, Sagar Nayak, Areena Fernandes, Priyanka Padmanabhan, Balkrishna Arjun Patil, Ram Murti Meena, Nagappa Ramaiah
Turkish Journal of Biology
The sfp gene responsible for surfactin production was screened from the DNA extracts of 37 Bacillus spp. whose identity was confirmed by 16S rRNA gene sequence analyses. PCR screening revealed amplification of sfp gene fragments in a total of 25 isolates. Several isolates belonging to Bacillus tequilensis were found to be positive for this gene. A gene fragment coding for the sfp gene was amplified and cloned from genomic DNA of the isolate B. tequilensis NIOS11. The cloned gene has an open reading frame of 675 bp coding for 224 amino acids with a theoretical molecular weight of 26,166.33 Da …
Molecular Characterization Of Yarrowia Lipolytica Strains Isolated From Different Environments And Lipase Profiling, Onur Akpinar, Füsun Bahri̇ye Uçar
Molecular Characterization Of Yarrowia Lipolytica Strains Isolated From Different Environments And Lipase Profiling, Onur Akpinar, Füsun Bahri̇ye Uçar
Turkish Journal of Biology
In order to analyze yeasts that produce industrial compounds, it is essential to identify them accurately. Yarrowia lipolytica is one of the most extensively studied 'nonconventional' yeasts, being a strictly aerobic microorganism capable of producing important metabolites and having an intense secretory activity, which justifies efforts to use it in industry (as a biocatalyst), in molecular biology, and in studies of genetics. Therefore, in this study, an accurate identification of Y. lipolytica strains was performed using 3 different molecular biological methods (RFLP analysis of ITS1-5.8S rDNA-ITS2 and 18S rDNA regions and sequencing of the D1/D2 domain of the 26S rDNA …
Medium Optimization For The Production Of Exopolysaccharide By Bacillus Subtilis Using Synthetic Sources And Agro Wastes, Sirajunnisa Abdul Razack, Vijayagopal Velayutham, Viruthagiri Thangavelu
Medium Optimization For The Production Of Exopolysaccharide By Bacillus Subtilis Using Synthetic Sources And Agro Wastes, Sirajunnisa Abdul Razack, Vijayagopal Velayutham, Viruthagiri Thangavelu
Turkish Journal of Biology
Exopolysaccharides (EPSs) play an extensive role as biopolymers in the environment by replacing synthetic polymers as they are degradable, nontoxic, and produced by microorganisms. An attempt was made to optimize a medium, by the one-factor-at-a-time method, for an enhanced production of EPS from a soil isolate, Bacillus subtilis. The study was carried out by experimenting on various nutrients at different concentrations. EPS was precipitated using ethanol, the total carbohydrate content was determined by phenol sulfuric acid method, and functional groups were detected by Fourier transform infrared (FTIR) spectrophotometry. The finalized medium contained sucrose (20 g/L), yeast extract (5 g/L), NaCl …
Effects Of Acacia Cyanophylla Lindl. Extracts On Seed Germination And Seedling Growth Of Four Crop And Weed Plants, Asma El Ayeb, Hichem Ben Jannet, Fethia Harzallah Skhiri
Effects Of Acacia Cyanophylla Lindl. Extracts On Seed Germination And Seedling Growth Of Four Crop And Weed Plants, Asma El Ayeb, Hichem Ben Jannet, Fethia Harzallah Skhiri
Turkish Journal of Biology
The aqueous and organic extracts of the roots, stems, phyllodes, flowers, legumes, and seeds of Acacia cyanophylla Lindl. were assayed at different concentrations to assess their allelopathic potential. The extracts were tested on the seeds of 2 crops (Triticum aestivum L. and Lactuca sativa L.) and 2 weeds (Peganum harmala L. and Silybum marianum L.) species. The final germination percentages and the seedling shoot and root lengths were significantly reduced by the A. cyanophylla extracts as compared to the control. Aqueous extract from seeds was the strongest inhibitor of germination, shoot length, and root length for L. sativa and P. …
Cr(Vi) Reduction By Cellulosimicrobium Sp. Isolated From Tannery Effluent, Aniqa Naeem, Rida Batool, Nazia Jamil
Cr(Vi) Reduction By Cellulosimicrobium Sp. Isolated From Tannery Effluent, Aniqa Naeem, Rida Batool, Nazia Jamil
Turkish Journal of Biology
Cr(VI) is a toxic metal that has carcinogenic and mutagenic effects on all living organisms. In order to study the contribution of microbes towards Cr(VI) reduction into the less toxic Cr(III) form, an indigenous chromium-resistant bacterial strain (A_8) was isolated from a tannery effluent. It was identified as Cellulosimicrobium sp. on the basis of morphological and biochemical characterization and 16S rRNA gene sequencing. It could tolerate up to 1800 µg mL^{-1} of K_{2}CrO_{4} and showed an optimum reduction (98.6%) of Cr(VI) at the concentration of 900 µg mL^{-1} aerobically. Cell-free enzyme assay exhibited the reduction of Cr(VI) in vitro. A …
Role Of Plant Growth Promoting Rhizobacteria On Antioxidant Enzyme Activities And Tropane Alkaloid Production Of Hyoscyamus Niger Under Water Deficit Stress, Mansour Ghorbanpour, Mehrnaz Hatami, Kazem Khavazi
Role Of Plant Growth Promoting Rhizobacteria On Antioxidant Enzyme Activities And Tropane Alkaloid Production Of Hyoscyamus Niger Under Water Deficit Stress, Mansour Ghorbanpour, Mehrnaz Hatami, Kazem Khavazi
Turkish Journal of Biology
This study examined the effects of inoculation with 2 rhizobacteria strains, Pseudomonas putida (PP) and Pseudomonas fluorescens (PF), on growth parameters, chlorophyll, proline, leaf relative water content (RWC), antioxidant enzyme activities (including superoxide dismutase (SOD), peroxidase (POX), and catalase (CAT)), tropane alkaloids (such as hyoscyamine (HYO) and scopolamine (SCO)), and production of Hyoscyamus niger under 3 water deficit stress (WDS) levels, i.e. 30% (W1), 60% (W2), and 90% (W3) water depletion of field capacity. The results showed that inoculation with PP and PF strains minimized the deleterious effects of WDS on growth parameters. The activities of SOD and POX in …
Purification And Characterization Of A Novel Detergent- And Organic Solvent-Resistant Endo-Beta-1,4-Glucanase From A Newly Isolated Basidiomycete Peniophora Sp. Ndvn01, Dinh Kha Trinh, Dinh Thi Quyen, Thi Tuyen Do, Ngoc Minh Nghiem
Purification And Characterization Of A Novel Detergent- And Organic Solvent-Resistant Endo-Beta-1,4-Glucanase From A Newly Isolated Basidiomycete Peniophora Sp. Ndvn01, Dinh Kha Trinh, Dinh Thi Quyen, Thi Tuyen Do, Ngoc Minh Nghiem
Turkish Journal of Biology
A novel extracellular endoglucanase from a basidiomycete strain Peniophora sp. NDVN01 was purified 2.8-fold to homogeneity through ammonium sulfate precipitation and gel filtration with Bio-Gel P-100 and Sephadex G-75. The endoglucanase had a specific activity of 163.8 U/mg protein and a molecular mass of 32 kDa. Optimum temperature and pH were at 60 °C and 4.5, respectively. The enzyme was stable at up to 42 °C and in the pH range of 3.5-5.5 with a residual activity of over 80% for 24 h of treatment. Ni^2^+ activated but other metal ions showed no or slight inhibitory effect on the enzyme …
Optimization Of Immobilization Conditions By Conventional And Statistical Strategies For Alkaline Lipase Production By Pseudomonas Aeruginosa Mutant Cells: Scale-Up At Bench-Scale Bioreactor Level, Deepali Bisht, Santosh Kumar Yadav, Nandan Singh Darmwal
Optimization Of Immobilization Conditions By Conventional And Statistical Strategies For Alkaline Lipase Production By Pseudomonas Aeruginosa Mutant Cells: Scale-Up At Bench-Scale Bioreactor Level, Deepali Bisht, Santosh Kumar Yadav, Nandan Singh Darmwal
Turkish Journal of Biology
Suitability of 3 matrices, agarose, sodium alginate, and polyacrylamide, for immobilization of mutant cells of Pseudomonas aeruginosa MTCC 10,055 was investigated. Of these, agarose was proven to be the best as exhibiting maximum enzyme production (4363.4 U/mL), followed by polyacrylamide gel (2172.3 U/mL). Alginate beads were the poorest. The one-variable-at-a-time approach suggested agarose at 2.0%, immobilized bead at 4.0 g blocks/50 mL, and initial cell loading of 0.8 g in the matrix as optimum conditions for maximum lipase production (5982.3 U/mL) after 24 h of incubation. However, response surface methodology studies determined the optimum values of these variables as 1.96%, …
Membrane And Dna Damaging/Protective Effects Of Eugenol, Eucalyptol, Terpinen-4-Ol, And Camphor At Various Concentrations On Parental And Drug-Resistant H1299 Cells, Aysun Özkan, Ayşe Erdoğan
Membrane And Dna Damaging/Protective Effects Of Eugenol, Eucalyptol, Terpinen-4-Ol, And Camphor At Various Concentrations On Parental And Drug-Resistant H1299 Cells, Aysun Özkan, Ayşe Erdoğan
Turkish Journal of Biology
Eugenol, eucalyptol, terpinen-4-ol, and camphor, used as flavor agents in cosmetic and food products, have both prooxidant and antioxidant activities. To clarify the mechanisms of their cytotoxic effect and the factors affecting their antioxidant/prooxidant activities, we investigated cell membrane and DNA damage/protective effects induced by eugenol, eucalyptol, terpinen-4-ol, and camphor in parental and drug-resistant human lung cancer cell lines. The parental cells were found approximately 3, 6, and 8 times more sensitive to camphor cytotoxicity than drug-resistant cells at 24, 48, and 72 h respectively. The cytotoxic activity for both cell types was found to be in the order of …
Effect Of Drought Stress On Oxidative Damage And Antioxidant Enzyme Activity In Melon Seedlings, Musa Kavas, Mehmet Cengi̇z Baloğlu, Oya Akça, Fatma Seli̇n Köse, Derya Gökçay
Effect Of Drought Stress On Oxidative Damage And Antioxidant Enzyme Activity In Melon Seedlings, Musa Kavas, Mehmet Cengi̇z Baloğlu, Oya Akça, Fatma Seli̇n Köse, Derya Gökçay
Turkish Journal of Biology
Drought stress is one of the most serious environmental limitations affecting the growth and productivity of plants. In the current study, oxidative damage and antioxidant responses under polyethylene glycol (PEG)-induced osmotic stress were compared in 2 melon cultivars, Kırkağaç and Galia. Melon seedlings were subjected to PEG-6000 solutions of 2 different osmotic potentials, -0.2 MPa and -0.4 MPa. Various physiological parameters, malondialdehyde (MDA), proline content, and antioxidant enzymes including catalase (CAT), ascorbate peroxidase (APX), and glutathione reductase (GR) were measured. A reduction in fresh and dry weights of shoot and root tissues was observed. Significant proline accumulation was detected with …
Global Assessment Of Network Inference Algorithms Based On Available Literature Of Gene/Protein Interactions, Gökmen Altay, Nejla Altay, David Neal
Global Assessment Of Network Inference Algorithms Based On Available Literature Of Gene/Protein Interactions, Gökmen Altay, Nejla Altay, David Neal
Turkish Journal of Biology
We propose a framework that uses the available gene/protein interaction databases of the literature as a universal benchmark in order to globally assess the inference performances of gene network inference algorithms. We also developed an R software package for convenient use of the framework, which can also be used in general as a quick tool to search in the literature for available validations of interactions. We applied the proposed approach to 2 publicly available prostate cancer gene expression datasets and a large breast cancer gene expression dataset. The results revealed different aspects and superiority of algorithms that had not been …
Silver Nanoparticles: Cytotoxic, Apoptotic, And Necrotic Effects On Mcf-7 Cells, Hakan Çi̇ftçi̇, Mustafa Türk, Uğur Tamer, Si̇yami̇ Karahan, Yusuf Menemen
Silver Nanoparticles: Cytotoxic, Apoptotic, And Necrotic Effects On Mcf-7 Cells, Hakan Çi̇ftçi̇, Mustafa Türk, Uğur Tamer, Si̇yami̇ Karahan, Yusuf Menemen
Turkish Journal of Biology
The present study was conducted to examine cytotoxic, apoptotic, and necrotic effects of silver nanoparticles (AgNPs) on MCF-7 cells. Colloidal AgNPs were fabricated in an alkaline pH environment via reduction of silver nitrate with hydroxylamine hydrochloride. The size of AgNPs was measured by atomic force microscopy (AFM), transmission electron microscopy (TEM), and dynamic light scattering. Zeta potential of AgNPs was determined by laser Doppler microelectrophoresis. After exposing MCF-7 cells to AgNPs for 24 h, cytotoxicity was measured by WST-1 assay. Apoptosis and necrosis in MCF-7 cells were detected by Annexin-V-FLUOS immunostaining and double staining of Hoechst dye with propidium iodide. …
Lignification Response For Rolled Leaves Of Ctenanthe Setosa Under Long-Term Drought Stress, Rabi̇ye Terzi̇, Nesli̇han Saruhan Güler, Ni̇hal Çalişkan, Asi̇m Kadioğlu
Lignification Response For Rolled Leaves Of Ctenanthe Setosa Under Long-Term Drought Stress, Rabi̇ye Terzi̇, Nesli̇han Saruhan Güler, Ni̇hal Çalişkan, Asi̇m Kadioğlu
Turkish Journal of Biology
Leaf rolling is a dehydration avoidance mechanism for plants under drought stress. To understand how it affects the lignification process in response to long-term drought stress in Ctenanthe setosa plants that have the leaf-rolling mechanism, the enzymes in lignification were studied in unrolled leaves as a control and at 2 different leaf rolling indices at days 35 and 47 of the drought period. The results indicated that the activities of phenylalanine ammonia lyase, indole-3-acetic acid oxidase, soluble peroxidase, ionically wall-bound peroxidase, covalently wall-bound peroxidase, and polyphenol oxidase were increased during long-term drought stress. However, nitrate reductase activity was decreased while …
The Effect Of Sooty Mold On Fluorescence And Gas Exchange Properties Of Olive Tree, Sonia A. P. Santos, Conceicao Santos, Sonia Silva, Glória Pinto, Laura M. Torres, Antonio J. A. Nogueira
The Effect Of Sooty Mold On Fluorescence And Gas Exchange Properties Of Olive Tree, Sonia A. P. Santos, Conceicao Santos, Sonia Silva, Glória Pinto, Laura M. Torres, Antonio J. A. Nogueira
Turkish Journal of Biology
Sooty mold is a complex of dark-pigmented fungi that covers leaves and branches of the olive tree (Olea europaea L.). This coverage can bring several consequences for the plant, such as decrease of the photosynthetic rate. Therefore, this study aims to understand the effect of sooty mold on fluorescence and gas exchange of olive leaves. Olive leaves were field-collected and histological, physiological (water content, fluorescence parameters, and carbon dioxide fluxes), and biochemical (osmolality; chlorophyll a, b, and a/b contents; and lipid peroxidation) analyses were performed in healthy leaves and in leaves covered with sooty mold. Histological analysis revealed a complex …
Activation Of The Jak/Stat Pathway In Human Neutrophils By Ndma, Wioletta Ratajczak Wrona, Ewa Jablonska, Marzena Garley, Jakub Jablonski, Piotr Radziwon, Agnieszka Iwaniuk
Activation Of The Jak/Stat Pathway In Human Neutrophils By Ndma, Wioletta Ratajczak Wrona, Ewa Jablonska, Marzena Garley, Jakub Jablonski, Piotr Radziwon, Agnieszka Iwaniuk
Turkish Journal of Biology
The study objective was to assess the role of the JAK/STAT pathway in the induction of nitric oxide (NO) synthesis with the involvement of inducible nitric oxide synthase (iNOS) and in the generation of superoxide anion radical by human neutrophils (PMNs) exposed to N-nitrosodimethylamine (NDMA). Isolated PMNs were incubated in the presence of NDMA. The expression of the study proteins in the cytoplasmic and nuclear fraction was determined by western blotting. Total NO was assayed in cell cultures by Griess reaction. The ability of PMNs to generate superoxide anion radical was assessed using the cytochrome-c reduction test. The current results …