Open Access. Powered by Scholars. Published by Universities.®
- Discipline
-
- Life Sciences (5932)
- Medicine and Health Sciences (2313)
- Animal Sciences (2151)
- Physical Sciences and Mathematics (1962)
- Biology (1669)
-
- Medical Sciences (1464)
- Zoology (1302)
- Chemistry (1183)
- Botany (1118)
- Plant Sciences (1118)
- Agriculture (994)
- Forest Sciences (994)
- Veterinary Medicine (849)
- Computer Engineering (461)
- Computer Sciences (461)
- Electrical and Computer Engineering (461)
- Engineering (461)
- Mathematics (146)
- Earth Sciences (107)
- Physics (65)
- Keyword
-
- Turkey (609)
- Taxonomy (221)
- Oxidative stress (132)
- New records (121)
- New species (104)
-
- Apoptosis (93)
- Morphology (93)
- New record (91)
- Antioxidant (83)
- Distribution (80)
- Phylogeny (79)
- COVID-19 (78)
- Cytotoxicity (73)
- Growth (73)
- Biodiversity (72)
- Antimicrobial activity (71)
- Iran (71)
- 1 (67)
- Inflammation (66)
- 2 (63)
- Breast cancer (62)
- Fauna (61)
- Rat (61)
- Antioxidant activity (60)
- Genetic diversity (60)
- Gene expression (59)
- Antioxidant enzymes (48)
- Endemic (48)
- Antibacterial activity (47)
- Cancer (47)
- Publication Year
Articles 4651 - 4680 of 10521
Full-Text Articles in Entire DC Network
A Data-Aware Cognitive Engine For Scheduling Data Intensive Applications In A Grid, Vijaya Nagarajan, Maluk Mohamed Mulk Abdul
A Data-Aware Cognitive Engine For Scheduling Data Intensive Applications In A Grid, Vijaya Nagarajan, Maluk Mohamed Mulk Abdul
Turkish Journal of Electrical Engineering and Computer Sciences
Data-intensive applications produce huge amounts of data that need to be stored, analyzed, and interpreted. A data grid serves as a cost-effective infrastructure for solving these data-intensive applications. Existing scheduling strategies are best suited for handling compute-intensive applications, although they lack in performance while handling data-intensive applications. In this work, a novel mechanism of incorporating cognitive science in a data grid is proposed for scheduling data-intensive workflows. A unique model is derived in which a cognitive engine (CE) is built into the middleware of the data grid. The intelligent agents present in the CE handle the request for data sets …
Breast Boundary Segmentation In Thermography Images Based On Random Walkers, Mehrdad Moghbel, Syamsiah Mashohor, Rozi Mahmud, M.Iqbal Bin Saripan, Suzana Abd Hamid, Suraini Mohamad Sani, Saiful Nizam
Breast Boundary Segmentation In Thermography Images Based On Random Walkers, Mehrdad Moghbel, Syamsiah Mashohor, Rozi Mahmud, M.Iqbal Bin Saripan, Suzana Abd Hamid, Suraini Mohamad Sani, Saiful Nizam
Turkish Journal of Electrical Engineering and Computer Sciences
Breast and areola boundary detection and segmentation present the biggest challenge in breast segmentation from thermography images, as breast boundaries, especially in the upper quadrants of the breast, are nonexistent. Many segmentation approaches have been proposed for breast segmentation, such as active contours and snakes, circular Hough transforms, and live wires, but these methods often fail to achieve satisfactory results. With recent advances in image processing techniques, new segmentation concepts are being developed, such as random walkers, which have received high interest from the medical imaging community. In this study, 91 images acquired utilizing a FLIR A320 thermal camera are …
Aqueous Paramagnetic Solutions For Mri Phantoms At 3 T:A Detailed Study On Relaxivities, Kalaivani Thangavel, Emi̇ne Ülkü Saritaş
Aqueous Paramagnetic Solutions For Mri Phantoms At 3 T:A Detailed Study On Relaxivities, Kalaivani Thangavel, Emi̇ne Ülkü Saritaş
Turkish Journal of Electrical Engineering and Computer Sciences
Phantoms with known T$_{1}$ and T$_{2}$ values that are prepared using solutions of easily accessible paramagnetic agents are commonly used in MRI imaging centers, especially with the goal of validating the accuracy of quantitative imaging protocols. The relaxivity parameters of several agents were comprehensively examined at lower B$_{0}$ field strengths, but studies at 3 T remain limited. The main goal of this study is to measure r$_{1}$ and r$_{2}$ relaxivities of three common paramagnetic agents (CuSO$_{4}$, MnCl$_{2}$, and NiCl$_{2})$ at room temperature at 3 T. Separate phantoms were prepared at various concentrations of 0.05-0.5 mM for MnCl$_{2}$ and 1-6 mM …
Edge Distance Graph Kernel And Its Application To Small Molecule Classification, Mehmet Tan
Edge Distance Graph Kernel And Its Application To Small Molecule Classification, Mehmet Tan
Turkish Journal of Electrical Engineering and Computer Sciences
Graph classification is an important problem in graph mining with various applications in different fields. Kernel methods have been successfully applied to this problem, recently producing promising results. A graph kernel that mostly specifies classification performance has to be defined in order to apply kernel methods to a graph classification problem. Although there are various previously proposed graph kernels, the problem is still worth investigating, as the available kernels are far from perfect. In this paper, we propose a new graph kernel based on a recently proposed concept called edge distance-k graphs. These new graphs are derived from the original …
Taller Peaks: An Improved Spike Detection Algorithm That Simultaneously Reduces Type I And Type Ii Errors For Wave_Clus, Murat Okatan
Taller Peaks: An Improved Spike Detection Algorithm That Simultaneously Reduces Type I And Type Ii Errors For Wave_Clus, Murat Okatan
Turkish Journal of Electrical Engineering and Computer Sciences
Wave_clus is an unsupervised spike detection and sorting algorithm that has been used in dozens of experimental studies as a spike sorting tool. It is often used as a benchmark for comparing the performance of new spike sorting algorithms. For these reasons, the spike detection performance of Wave_clus is important for both experimental and computational studies that involve spike sorting. Two measures of spike detection performance are the number of false positive detections (type I error) and the number of missed spikes (type II error). Here, a new spike detection algorithm is proposed that reduces the number of misses and …
K-Nn-Based Classification Of Sleep Apnea Types Using Ecg, Oğuz Han Ti̇muş, Emi̇ne Doğru Bolat
K-Nn-Based Classification Of Sleep Apnea Types Using Ecg, Oğuz Han Ti̇muş, Emi̇ne Doğru Bolat
Turkish Journal of Electrical Engineering and Computer Sciences
Obstructive sleep apnea syndrome (OSAS) is a common sleep disorder that yields cardiovascular diseases, excessive daytime sleepiness, and poor quality of life if not treated. Classification of OSAS from electrocardiograms (ECGs) is a noninvasive method and much more affordable than traditional methods. This study proposes a pattern recognition system for automated apnea diagnosis based on heart rate variability (HRV) and ECG-derived respiratory signals. The k-nearest neighbor (k-NN) classifier has been used to develop the models for classifying the sleep apnea types. For comparison purposes, classification models based on multilayer perceptron, support vector machines, and C4.5 decision tree (C4.5 DT) have …
A New Segmentation Method Of Cerebral Mri Images Based On The Fuzzy C-Means Algorithm, Mohamed Zaki Abderrezak, Mouatez Billah Chibane, Karim Mansour
A New Segmentation Method Of Cerebral Mri Images Based On The Fuzzy C-Means Algorithm, Mohamed Zaki Abderrezak, Mouatez Billah Chibane, Karim Mansour
Turkish Journal of Electrical Engineering and Computer Sciences
The aim of this work is to present a new method for cerebral MRI image segmentation based on modification of the fuzzy c-means (FCM) algorithm. We used local and nonlocal information distance in the initial function of the robust FCM model. The obtained results of the classification of MRI images showed the effectiveness of the suggested model. Calculation of the similarity index confirms that our method is well adapted to MRI images even in the presence of noise.
Tgf-β: Its Role In The Differentiation And Function Of T Regulatory And Effector Cells, Sujuan Yang, Songguo Zheng
Tgf-β: Its Role In The Differentiation And Function Of T Regulatory And Effector Cells, Sujuan Yang, Songguo Zheng
Turkish Journal of Biology
The cytokine transforming growth factor-β (TGF-β) plays an important role in the maintenance of T cell homeostasis, immune tolerance to self-antigens, and T cell differentiation during immune responses. TGF-β has pleiotropic effects on adaptive immune responses, especially on the differentiation of T helper and T regulatory cell populations, which depends on the T cell differentiation status and the stimulation conditions. This review provides an update about the roles of TGF-β in T cell responses, especially in the regulation of Treg development and biological features under steady state and inflammation. We also discuss the additional roles that TGF-β plays in the …
The Sca1+ Mesenchymal Stromal Subpopulation Promotesdendritic Cell Commitment In The Niche, Na Li, Dandan Yin, Huijie Zhang, Jinmei Xu, Fan Wen, Zheng Liu, Yaozhen Chen, Ning An, Jiajia Xin, Yazhou Wang, Wen Yin, Xingbin Hu
The Sca1+ Mesenchymal Stromal Subpopulation Promotesdendritic Cell Commitment In The Niche, Na Li, Dandan Yin, Huijie Zhang, Jinmei Xu, Fan Wen, Zheng Liu, Yaozhen Chen, Ning An, Jiajia Xin, Yazhou Wang, Wen Yin, Xingbin Hu
Turkish Journal of Biology
The hematopoietic microenvironment regulates self-renewal and differentiation of hematopoietic stem cells. Mesenchymal stromal cells (MSCs) contribute to the niche and participate in supporting dendritic cell (DC) commitment in vitro and in vivo. However, due to MSCs being heterogenic, it is necessary to understand the function of the MSC subpopulation in modulating the DC commitment. The current study showed that one of the bone-related Sca1+ MSCs enhanced bone marrow cell differentiation into DCs by direct cell-to-cell contact. Furthermore, the expression of STAT3 and STAT5 genes decreased in supernatant cells after Sca1+ MSCs were cocultured with bone marrow cells. In contrast, the …
Preparation, Characterization, And Enhanced Antimicrobial Activity: Quercetin-Loaded Plga Nanoparticles Against Foodborne Pathogens, Tüli̇n Arasoğlu, Serap Derman, Banu Mansuroğlu, Deni̇z Uzunoğlu, Büşra Sümaye Koçyi̇ği̇t, Büşra Gümüş, Tayfun Acar, Burcu Tuncer
Preparation, Characterization, And Enhanced Antimicrobial Activity: Quercetin-Loaded Plga Nanoparticles Against Foodborne Pathogens, Tüli̇n Arasoğlu, Serap Derman, Banu Mansuroğlu, Deni̇z Uzunoğlu, Büşra Sümaye Koçyi̇ği̇t, Büşra Gümüş, Tayfun Acar, Burcu Tuncer
Turkish Journal of Biology
The use of quercetin as a bioflavonoid is becoming increasingly common in food industries even though poor water solubility, instability, absorption, and permeability have limited its application. The oil-in-water single-emulsion solvent evaporation method to synthesize highly stable and soluble quercetin-encapsulated nanoparticles (NPs), in which the reaction yield, particle size, and polydispersity of the NPs are varied greatly within the process parameters of the synthesis method, has been optimized. NPs with different initial quercetin amounts were used to determine how the quercetin amount affected nanoparticle properties and antimicrobial eficiency. Listeria monocytogenes, Salmonella typhimurium, Escherichia coli, and Staphylococcus aureus were chosen as …
Molecular Investigations Of The Somatic Embryogenesis Recalcitrancein The Cherry (Prunus Cerasus L.) Rootstock Cab 6p, Kaouther Ben Mahmoud, Emna Jedidi, Fabienne Delporte, Yordan Muhovski, Ahmed Jemmali, Philippe Druart
Molecular Investigations Of The Somatic Embryogenesis Recalcitrancein The Cherry (Prunus Cerasus L.) Rootstock Cab 6p, Kaouther Ben Mahmoud, Emna Jedidi, Fabienne Delporte, Yordan Muhovski, Ahmed Jemmali, Philippe Druart
Turkish Journal of Biology
Somatic embryogenesis is a powerful tool for clonal propagation and plant breeding in many plant species, but its application is limited by the genotype response based on the interaction between gene expression and culture conditions. In this context, the recalcitrance of the nonembryogenic cherry rootstock Prunus cerasus cultivar CAB 6P was investigated via the analysis of the candidate genes PiABP19, Picdc2, and PiSERK3 in comparison with the embryogenic genotype Prunus incisa cultivar N°131. Semiquantitative RT-PCR was employed to assess the transcript level of these genes in leaf explants and derived calli of the two genotypes cultured on picloram-containing MS medium …
Identification Of Proteins Differentially Accumulated In Enterococcus Faecalis Under Acrylamide Exposure, Aleksandra Bocian, Konrad Hus, Marcin Jaromin, Miroslaw Tyrka, Andrzej Lyskowski
Identification Of Proteins Differentially Accumulated In Enterococcus Faecalis Under Acrylamide Exposure, Aleksandra Bocian, Konrad Hus, Marcin Jaromin, Miroslaw Tyrka, Andrzej Lyskowski
Turkish Journal of Biology
Analysis of bacterial proteomes can be used to obtain large amounts of information about adaptive microbial mechanisms to changing extracellular conditions. In the past, many bacterial species with the ability to degrade acrylamide were isolated. In this study differences in the Enterococcus faecalis proteome upon acrylamide exposure were investigated. We revealed substantial changes in the proteome of bacteria cultured in different environmental conditions. Microorganisms exposed to acrylamide showed higher accumulation of proteins associated with energy metabolism and its regulation. Moreover, several proteins involved in protection of cells from stress conditions were also identified. These biomacromolecules are involved in proper folding …
Differential Oxidative Response To Fluoropyrimidines In Colorectal Cancer Cell Lines, Ufuk Özer, Karen Wood Barbour
Differential Oxidative Response To Fluoropyrimidines In Colorectal Cancer Cell Lines, Ufuk Özer, Karen Wood Barbour
Turkish Journal of Biology
Colorectal cancer (CRC) is the second most common human malignancy in women and the third in men, accounting for approximately 8% of cancer-related deaths and 1.3 million newly diagnosed cases annually worldwide. CRC cell lines differ in morphological features, growth rate, and their genetic alterations, implicating the extent of variability among the lines. The goal of the current study was to investigate the phenotypes of CRC lines related to NADPH oxidase (NOX) activity and expression of NOX2 subunits in response to fluoropyrimidines. NOX activity in response to 5'-fluoro-2'-deoxyuridine (FdUrd) and VAS2780 was measured in CRC cell lines. Cells were treated …
Wild-Growing Rosa Heckeliana Tratt.: Phenolic Constituentswith Cytotoxic And Antioxidative Properties, Nursen Çoruh, Ni̇zametti̇n Özdoğan
Wild-Growing Rosa Heckeliana Tratt.: Phenolic Constituentswith Cytotoxic And Antioxidative Properties, Nursen Çoruh, Ni̇zametti̇n Özdoğan
Turkish Journal of Biology
Rosa heckeliana, as one of the wild-growing species of the family Rosacea, has a wide use in the folk medicine; however, scientifically there is very little known about it. Our objective was to examine the antioxidative and antiproliferative properties of Rosa heckeliana root extract and its phenolics. The phenolic constituents, namely catechin, caffeic acid, and ellagic acid, were obtained by the methods of extraction, fractionation, and purification through column chromatography. The DPPH and ABTS radical scavenging assays and total flavonoid content analysis were employed as the current antioxidant methods over the crude extract and fractionated parts. Among the extracts/fractions, the …
Converted Carotenoid Production In Dunaliella Salina By Using Cyclization Inhibitors 2-Methylimidazole And 3-Amino-1,2,4-Triazole, Arzu Yildirim, İsmai̇l Hakki Akgün, Meltem Dalay
Converted Carotenoid Production In Dunaliella Salina By Using Cyclization Inhibitors 2-Methylimidazole And 3-Amino-1,2,4-Triazole, Arzu Yildirim, İsmai̇l Hakki Akgün, Meltem Dalay
Turkish Journal of Biology
Carotenoids are vital for most photosynthetic organisms because of their crucial role in prevention of the damage caused by excess light or stress conditions like heat or nutrient deprivation. Some of them are also valuable for biotechnology wıth respect to their colorful feature and antioxidant properties. In this study, a natural β-carotene producer, green microalga Dunaliella salina, was evaluated for its potential to produce different valuable carotenoids through the inhibition of cyclization reactions in the carotenoid pathway by the chemical inhibitors 2-methylimidazole (2MI) and 3-amino-1,2,4-triazole (Amitrol). 2MI was shown to be effective on lutein accumulation in D. salina cultures grown …
Characterization And Pathogenicity Of Fusarium Proliferatum Andfusarium Verticillioides, Causal Agents Of Fusarium Ear Rot Of Corn, Nur Ain Izzati Mohd Zainudin, Farah Aqila Hamzah, Nor Azizah Kusai, Nur Syuhada Zambri, Suhaida Salleh
Characterization And Pathogenicity Of Fusarium Proliferatum Andfusarium Verticillioides, Causal Agents Of Fusarium Ear Rot Of Corn, Nur Ain Izzati Mohd Zainudin, Farah Aqila Hamzah, Nor Azizah Kusai, Nur Syuhada Zambri, Suhaida Salleh
Turkish Journal of Biology
Fusarium ear rot is a significant disease of corn caused by several toxigenic Fusarium species including Fusarium proliferatum and Fusarium verticillioides. Forty-one Fusarium isolates were recovered from corn with Fusarium ear rot disease symptoms collected from Peninsular Malaysia. Isolates were classified into three described species known as F. proliferatum, F. verticillioides, and F. solani. Based on sexual compatibility test, four isolates from F. proliferatum (MATD-1) were crossed-fertile with tester isolate F. proliferatum D024853 (MATD-2), producing perithecia in the presence of ascospores. Meanwhile, the isolates from F. verticillioides (MATA-2) were crossed with tester isolate F. verticillioides A00149 (MATA-1), but were found …
Combination Of Esomeprazole With Chemotherapeutics Results In More Pronounced Cytotoxic Effect Via Apoptosis On A549 Nonsmall-Cell Lung Cancer Cell Line, Arzu Yilmaztepe Oral, Haluk Barbaros Oral, Mehmet Sarimahmut, Buse Cevatemre, Güven Özkaya, Şeni̇z Korkmaz, Engi̇n Ulukaya
Combination Of Esomeprazole With Chemotherapeutics Results In More Pronounced Cytotoxic Effect Via Apoptosis On A549 Nonsmall-Cell Lung Cancer Cell Line, Arzu Yilmaztepe Oral, Haluk Barbaros Oral, Mehmet Sarimahmut, Buse Cevatemre, Güven Özkaya, Şeni̇z Korkmaz, Engi̇n Ulukaya
Turkish Journal of Biology
The vacuolar (H+)-ATPases that pump H+ from the cytoplasm to extracellular compartments can alter the pH of the tumor microenvironment. Esomeprazole can effectively inhibit vacuolar (H+)-ATPases and may increase the effectiveness of chemotherapeutics. Therefore, we used esomeprazole in combination with cisplatin, carboplatin, paclitaxel, docetaxel, gemcitabine, and vinorelbine on the A549 nonsmall-cell lung cancer cell line. Cisplatin and carboplatin combinations with esomeprazole exhibited superior cytotoxicity compared to the other selected chemotherapeutics. Low-dose combinations of esomeprazole with either cisplatin or carboplatin resulted in synergistic interaction. We examined cytotoxic activity of these combinations with the xCELLigence real-time cytotoxicity assay and detected that esomeprazole …
Population Variation In Drought Resistance And Its Relationship With Adaptiveand Physiological Seedling Traits In Turkish Red Pine (Pinus Brutia Ten.), Gaye Kandemi̇r, Sertaç Önde, Fati̇h Temel, Zeki̇ Kaya
Population Variation In Drought Resistance And Its Relationship With Adaptiveand Physiological Seedling Traits In Turkish Red Pine (Pinus Brutia Ten.), Gaye Kandemi̇r, Sertaç Önde, Fati̇h Temel, Zeki̇ Kaya
Turkish Journal of Biology
Variation in drought resistance and its relationship with adaptive and physiological traits in forest trees are important in choosing suitable seed sources for reforestation and afforestation programs. A common garden experiment using 240 half-sib families originating from coastal and inland populations of Turkish red pine (Pinus brutia) in Turkey was set up with three replicates. The aims were to determine variation of drought damage, height growth, and phenology among populations and to investigate the relationship between drought damage and physiological traits (i.e. plant moisture stress and proline content). Three-year-old seedlings were subjected to drought treatment during the summer of 2000 …
Heterologous Expression And Characterization Of A High Redox Potential Laccase Fromcoriolopsis Polyzona Mucl 38443, Orkun Pi̇nar, Candan Tamerler Behar, Ayten Karataş
Heterologous Expression And Characterization Of A High Redox Potential Laccase Fromcoriolopsis Polyzona Mucl 38443, Orkun Pi̇nar, Candan Tamerler Behar, Ayten Karataş
Turkish Journal of Biology
In this study, a novel laccase gene, named as Cplcc1, and its corresponding cDNA were isolated and characterized from the Coriolopsis polyzona MUCL 38443 strain. The Cplcc1 gene consists of a 1563-bp open reading frame encoding a protein of 520 amino acids with a 20-residue putative signal peptide. The size of the Cplcc1 gene is 2106 bp and it contains ten introns and five potential N-glycosylation sites. Additionally, the isolated full-length Cplcc1 cDNA was successfully expressed in Pichia pastoris. The heterologous expression conditions were also optimized and the highest activity value increased to 800 U L-1 with 1.5% methanol, 0.8 …
Neuropeptide Y Reduces Migration Capacity Of Human Choriocarcinomacell Line By Altering Oxidative/Antioxidative Status, Milos Matic, Milica Paunovic, Branka Ognjanovic, Andras Stajn, Zorica Saicic
Neuropeptide Y Reduces Migration Capacity Of Human Choriocarcinomacell Line By Altering Oxidative/Antioxidative Status, Milos Matic, Milica Paunovic, Branka Ognjanovic, Andras Stajn, Zorica Saicic
Turkish Journal of Biology
Reduced migration capacity of trophoblast cells leads to poor placentation and correlates with severe pregnancy disorders such as intrauterine growth restriction and preeclampsia. Neuropeptide Y (NPY) is sympathetic cotransmitter involved in various physiological processes and its levels are significantly increased in preeclamptic pregnancy compared to healthy pregnancy. In this study the prooxidative role of NPY and its effects on migration capacity of human trophoblast cell line JEG-3 were investigated together with the effects of nitric oxide (NO) depletion, a molecule that was shown to play an important role in promoting cell migration. The cells were treated for 24 h (short-term …
Morphology, Development, And Transplant Potential Of Prunus Aviumand Cornus Sanguinea Seedlings Growing Under Different Led Lights, Filippos Bantis, Kalliopi Radoglou
Morphology, Development, And Transplant Potential Of Prunus Aviumand Cornus Sanguinea Seedlings Growing Under Different Led Lights, Filippos Bantis, Kalliopi Radoglou
Turkish Journal of Biology
The objective of the present study was to investigate the impact of light-emitting diodes (LEDs) on the morphological and developmental characteristics of wild cherry (Prunus avium) and common dogwood (Cornus sanguinea). The LEDs used were L20AP67 (moderate blue, red and far-red, high green), AP673L (moderate blue, high red), G2 (low blue, high red and far-red), AP67 (moderate blue, red and far-red), and NS1 (high blue and green, low red, high red:far-red, 1% ultraviolet). Fluorescent light [FL (high blue and green, low red)] tubes served as the control treatment. The growth rate and subsequently the shoot height of Cornus sanguinea were …
Biocompatible Polymeric Coatings Do Not Inherently Reducethe Cytotoxicity Of Iron Oxide Nanoparticles, Ayli̇n Şendemi̇r Ürkmez, Ece Bayir, Eyüp Bi̇lgi̇, Mehmet Özgün Özen
Biocompatible Polymeric Coatings Do Not Inherently Reducethe Cytotoxicity Of Iron Oxide Nanoparticles, Ayli̇n Şendemi̇r Ürkmez, Ece Bayir, Eyüp Bi̇lgi̇, Mehmet Özgün Özen
Turkish Journal of Biology
Nanotechnology in biomedical research is an emerging and promising tool for different purposes, like high-resolution medical imaging, diagnostics, and targeted drug delivery. Although some experimental efforts focused on determination of the cytotoxicity of nanoparticles (NPs) are present, there are many controversial results. In this study, chitosan (CS)- and poly(acrylic acid) (PAA)-coated iron oxide nanoparticles (IONPs) were used to investigate the possible cytotoxicity of coated IONPs on model mammalian cell line SaOs-2 by evaluating cellular viability and membrane integrity. Increasing concentrations of IONPs increased the cytotoxic effect on SaOs-2 cells with both CS- and PAA-coated IONPs. Cell viability on day 3 …
K-Shell Decomposition Reveals Structural Properties Of The Gene Coexpression Network Forneurodevelopment, Abdullah Ercüment Çi̇çek
K-Shell Decomposition Reveals Structural Properties Of The Gene Coexpression Network Forneurodevelopment, Abdullah Ercüment Çi̇çek
Turkish Journal of Biology
Neurodevelopment is a dynamic and complex process, which involves interactions of thousands of genes. Understanding the mechanisms of brain development is important for uncovering the genetic architectures of neurodevelopmental disorders such as autism spectrum disorder and intellectual disability. The BrainSpan dataset is an important resource for studying the transcriptional mechanisms governing neurodevelopment. It contains RNA-seq and microarray data for 13 developmental periods in 8?16 brain regions. Various important studies used this dataset, in particular to generate gene coexpression networks. The topology of the BrainSpan gene coexpression network yielded various important gene clusters, which are found to play key roles in …
Genetic Engineering Of An Industrial Strain Of Streptomyces Clavuligerusfor Further Enhancement Of Clavulanic Acid Production, Aslihan Kurt Kizildoğan, Güli̇z Vanli Jaccard, Alper Mutlu, İbrahi̇m Sertdemi̇r, Gülay Özcengi̇z
Genetic Engineering Of An Industrial Strain Of Streptomyces Clavuligerusfor Further Enhancement Of Clavulanic Acid Production, Aslihan Kurt Kizildoğan, Güli̇z Vanli Jaccard, Alper Mutlu, İbrahi̇m Sertdemi̇r, Gülay Özcengi̇z
Turkish Journal of Biology
An industrial clavulanic acid (CA) overproducer Streptomyces clavuligerus strain, namely DEPA, was engineered to further enhance its CA production. Single or multiple copies of ccaR, claR (pathway-specific activators), and cas2 (CA synthase) genes under the control of different promoters were introduced into this strain. CA titers of the resulting recombinants were analyzed by HPLC in a dynamic fashion and compared to the vector-only controls and a wild-type strain of S. clavuligerus while their growth was monitored throughout fermentation. The addition of an extra copy of ccaR, under control of its own promoter or constitutive ermE* promoter (PermE*), led to 7.6- …
Improvement In Androgenic Response Of Borage (Borago Officinalis L.) Cultured Anthersusing Antibrowning Agents And Picloram, Mohammad Reza Abdollahi, Zahra Chardoli Eshaghi, Mohammad Majdi
Improvement In Androgenic Response Of Borage (Borago Officinalis L.) Cultured Anthersusing Antibrowning Agents And Picloram, Mohammad Reza Abdollahi, Zahra Chardoli Eshaghi, Mohammad Majdi
Turkish Journal of Biology
Given the importance of borage (Borago officinalis L.) as a medicinal herb, androgenic studies are necessary in order to speed up the breeding programs of this plant species. In this work, we evaluated the effect of silver nitrate, activated charcoal, ascorbic acid, and polyvinylpyrrolidone (PVP), previously described as antibrowning agents and promoters of androgenesis. Adding silver nitrate at a concentration of 5 mg L-1 significantly enhanced the androgenic responses of cultured anthers up to ~2-fold for total calli production (53.33%) and up to ~2.5-fold for embryonic calli and embryo formation (30% and 0.3 embryos/anther, respectively) compared to control culture medium. …
Cytotoxic And Apoptotic Effects Of Endemic Centaurea Fenzlii Reichardt On Themcf-7 Breast Cancer Cell Line, Ümi̇t Yirtici, Fati̇h Göger, Mehmet Sarimahmut, Aysun Ergene
Cytotoxic And Apoptotic Effects Of Endemic Centaurea Fenzlii Reichardt On Themcf-7 Breast Cancer Cell Line, Ümi̇t Yirtici, Fati̇h Göger, Mehmet Sarimahmut, Aysun Ergene
Turkish Journal of Biology
The main purpose of this study was to analyze the cytotoxic activity of an extract obtained from Centaurea fenzlii Reichardt, and the fractions eluted from this extract, in breast cancer cells. After isolation and structural analysis of the fractions were conducted, a meaningful cytotoxic effect was indicated. The goal of the analysis was to reveal the mechanism by which this effect occurs through researching the apoptotic side of these fractions and determining the amount of several proteins that are the products of the genes. Test substances were applied to breast cancer cells and the inhibitory concentration value 50 (IC50) that …
Comparison Of Microscopy, Elisa, And Real-Time Pcr For Detectionof Giardia Intestinalis In Human Stool Specimens, Yunus Emre Beyhan, Zeynep Taş Cengi̇z
Comparison Of Microscopy, Elisa, And Real-Time Pcr For Detectionof Giardia Intestinalis In Human Stool Specimens, Yunus Emre Beyhan, Zeynep Taş Cengi̇z
Turkish Journal of Medical Sciences
Background/aim: This study included patients who had digestive system complaints between August 2015 and October 2015. The research was designed to compare conventional microscopy with an antigen detection ELISA kit and the TaqMan-based real-time PCR (RT-PCR) technique for detection of Giardia intestinalis in human stool specimens. Materials and methods: Samples were concentrated by formalin-ether sedimentation technique and microscopic examinations were carried out on wet mount slides. A commercially available ELISA kit (Giardia CELISA, Cellabs, Brookvale, Australia) was used for immunoassay. DNA was extracted from fecal samples of about 200 mg using the QIAamp Fast DNA Stool Mini Kit (QIAGEN, Hilden, …
Scilla Bilgineri (Asparagaceae: Scilloideae): A New Species Ofscilla L. From Eastern Turkey, Hasan Yildirim, Yusuf Altioğlu
Scilla Bilgineri (Asparagaceae: Scilloideae): A New Species Ofscilla L. From Eastern Turkey, Hasan Yildirim, Yusuf Altioğlu
Turkish Journal of Botany
Scilla bilgineri Yıldırım (Asparagaceae) is described here as a new species. Diagnostic morphological characters, a full description, and detailed illustrations are provided on the basis of the type specimens and observations of wild populations. The new species is characterized by whitish to very pale lilac tepals, variegated ovary; style 5-6 mm long; oblong, straw to pale yellow and cucullate seed; pale creamy-white elaiosome, which is adherent to the testa; and pinkish to reddish, fleshy bulb scales. It belongs to Scilla bifolia agg. and is related to S. bifolia and S. albinerve within. It is easily distinguished from all other species …
Leaf Morpho-Physiological Dynamics In Salvia Officinalis L. Var. Purpurascens, Filipa Martins, Ivo Oliveira, Ana Barros, Carla Amaral, Sílvia Afonso, Helena Ferreira, José Moutinho-Pereira, Berta Gonçalves
Leaf Morpho-Physiological Dynamics In Salvia Officinalis L. Var. Purpurascens, Filipa Martins, Ivo Oliveira, Ana Barros, Carla Amaral, Sílvia Afonso, Helena Ferreira, José Moutinho-Pereira, Berta Gonçalves
Turkish Journal of Botany
Salvia officinalis L. var. purpurascens is one of the most insufficiently studied varieties of the genus Salvia. Hence, the study and characterization of this plant, as well as the monitoring of changes occurring during leaf ontogeny, are of great importance and interest. For this purpose, young and adult leaves of Salvia officinalis L. var. purpurascens collected in two different seasons and in two different years were analyzed, considering morpho-anatomical traits but also leaf gas exchange and chlorophyll a fluorescence parameters. Leaf age was found to have significant effects on several of the analyzed parameters, including the parenchyma, mesophyll, xylem, and …
Covariation In Diaspore Mass And Dispersal Patterns In Threemediterranean Coastal Dunes In Southern Spain, Carmen Rodriguez, Teresa Navarro, Ali El Keblawy
Covariation In Diaspore Mass And Dispersal Patterns In Threemediterranean Coastal Dunes In Southern Spain, Carmen Rodriguez, Teresa Navarro, Ali El Keblawy
Turkish Journal of Botany
The coastal dunes of southern Spain are an original Mediterranean ecosystem, insufficiently studied under dispersal. This study explores covariation patterns among diaspore mass, size, morphology, dispersal mode, and spatial dispersal in 78 native coastal dune species. Three coastal dunes under different climates were sampled and differentiated between fixed and mobile dunes. The Pérez-Harguindeguy methodology was applied and ANOVA, Kruskal-Wallis, and Mann-Whitney U tests were used in order to analyze the covariation. Diaspores were essentially small seeds or achenes (2-4 mm, from 10-5 to 1 g). The study revealed that diaspore mass is a key trait in the differentiation among dunes. …