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Spartan Daily, January 29, 2026, San Jose State University, School Of Journalism And Mass Communications

Spartan Daily, 2026

Volume 166, Issue 4

Crispr Screens In Ipsc-Derived Neurons Reveal Principles Of Tau Proteostasis, Avi J. Samelson, Nabeela Ariqat, Justin Mcketney, Gita Rohanitazangi, Celeste Parra Bravo, Rudra S. Bose, Kyle J. Travaglini, Victor L. Lam, Darrin Goodness, Thomas Ta, Gary Dixon, Emily Marzette, Julianne Jin, Ruilin Tian, Eric Tse, Romany Abskharon, Henry S. Pan, Emma C. Carroll, Rosalie E. Lawrence, For Full Author List, See Comments Below

Faculty Research, Scholarly, and Creative Activity

Aggregation of the protein tau defines tauopathies, the most common age-related neurodegenerative diseases, which include Alzheimer’s disease and frontotemporal dementia. Specific neuronal subtypes are selectively vulnerable to tau aggregation, dysfunction, and death. However, molecular mechanisms underlying cell-type-selective vulnerability are unknown. To systematically uncover the cellular factors controlling the accumulation of tau aggregates in human neurons, we conducted a genome-wide CRISPRi screen in induced pluripotent stem cell (iPSC)-derived neurons. The screen uncovered both known and unexpected pathways, including UFMylation and GPI anchor biosynthesis, which control tau oligomer levels. We discovered that the E3 ubiquitin ligase CRL5^SOCS4 controls tau levels in …

A Constructive-Engaging Analysis Of Descarrtes (European) And Oyeshile (African) On Personhood, Olanrewaju Shitta-Bey

Comparative Philosophy

An examination of the nature of the human person provides a crucial foundation for understanding human life and identity. Conceptions of personhood have far-reaching implications beyond philosophy, influencing politics, ethics, religion, and epistemology. Beliefs about what constitutes a person shapes theories of rights, responsibility, and justice; moral views on duty and accountability; religious understandings of the soul and the afterlife; and epistemological reflections on the sources and limits of knowledge. Inquiry into human nature is therefore not merely abstract, but central to understanding social organization and individual conduct. This paper examines two influential accounts of human nature drawn from distinct …

The Coherence Of Navayāna Pragmatism: Ambedkar And The Pragmatist Reconstruction Of Buddhist Philosophy, Danish Hamid

Comparative Philosophy

This paper examines the philosophical coherence of B.R. Ambedkar’s reconstruction of his (Navayāna) Buddhism in relation to John Dewey’s pragmatism. Building on Scott Stroud’s reading of Ambedkar as a Deweyan Pragmatist (2017, 2023), it argues that Dewey’s evolutionary naturalism, his conception of growth, and pragmatic redefinition of concepts provide Ambedkar with the methodological tools for a naturalistic and socially reconstructive reinterpretation of Buddhist doctrines such as anicca (impermanence), dhamma (Buddha’s teaching), nirvāṇa (enlightenment), karuna (compassion), etc. Ambedkar transforms impermanence from a metaphysics of flux into an ethics of progressive growth, and recasts dhamma as a social morality grounded in fraternity …

Implementing Riverine Biogeochemical Inputs In Ecco-Darwin: A Sensitivity Analysis Of Terrestrial Fluxes In A Data-Assimilative Global Ocean Biogeochemistry Model, Raphaël Savelli, Dustin Carroll, Dimitris Menemenlis, Jonathan M. Lauderdale, Clément Bertin, Stephanie Dutkiewicz, Manfredi Manizza, A. Anthony Bloom, Karel Castro-Morales, Charles E. Miller, Marc Simard, Kevin W. Bowman, Hong Zhang

Faculty Research, Scholarly, and Creative Activity

Terrestrial sources of carbon and nutrients drive biogeochemical cycles in coastal regions and in the global ocean. Quantifying their impact on the spatiotemporal variability of the ocean carbon cycle is pivotal to understanding the distinctive characteristics of ocean basins dominated by riverine inflow. ECCO-Darwin is a data-constrained, global-ocean biogeochemistry model that has heretofore lacked lateral inputs of carbon and nutrients. The objective of this study is to add this new capability to ECCO-Darwin and to carry out a suite of sensitivity experiments in order to quantify the impact of these lateral fluxes on coastal- and open-ocean biogeochemistry. In this work, …

Ai-Assisted Qualitative Analysis Of Formative Feedback To Support Student-Centered Learning In Physiology, Sulekha Anand, Ursula Holzmann, Alexander Y. Payumo

Faculty Research, Scholarly, and Creative Activity

This study evaluates the effectiveness of large language models (LLMs), specifically Claude Sonnet 4.0 and ChatGPT 4.1, for analyzing formative feedback to support student-centered learning (SCL). In large courses, instructors often struggle to promptly review and synthesize student input. We used a low-stakes task: analyzing 63 anonymous student responses to a Muddiest Point prompt in a human physiology class after a lecture on respiratory physiology. Across 20 runs, both LLMs consistently identified "Ventilation and Lung Mechanics" as the most frequent area of confusion, aligning with human analysis. LLMs completed the task significantly faster than a human reviewer (average: 19.6 s/31.0 …

Scaling Pedestrian Crossing Analysis To 100 U.S. Cities Via Ai-Based Segmentation Of Satellite Imagery, Marcel E. Moran, Arunav Gupta, Jiali Qian, Debra Laefer

Faculty Research, Scholarly, and Creative Activity

Accurately measuring street dimensions is essential to evaluating how their design influences both travel behavior and safety. However, gathering street-level information at city-scale with precision is difficult given the quantity and complexity of urban intersections. To address this challenge in the context of pedestrian crossings — a crucial component of walkability — we introduce a scalable and accurate method for automatically measuring crossing distance at both marked and unmarked crosswalks, applied to America’s 100 largest cities. First, OpenStreetMap coordinates were used to retrieve satellite imagery of intersections throughout each city — totaling roughly three million images. Next, Meta’s Segment Anything …

The Effect Of Fluorides In The Tio2(B) Anode On The Hydrogen Evolution Reaction In Aqueous Electrolytes, Khoi-Nguyen Nguyen, Lam Hoang Nguyen, Jozel John Salvacion, Nam Huu Nhat Nguyen, Samuel Ming Tuk Yeung, Seung Woo Lee, Liat Rosenfeld, Chengyu Song, Dahyun Oh

Faculty Research, Scholarly, and Creative Activity

For aqueous lithium-ion batteries (A-LIBs), the hydrogen evolution reaction (HER) poses a significant challenge, as it competes with the primary electrochemical processes of the anode, resulting in capacity loss and reduced cycling stability. In this study, we investigate the use of fluorine-based additives in anodes to mitigate HER in LIBs with aqueous electrolytes including low or high amounts of salt (water-in-salt electrolytes (WiSE)). We synthesized and incorporated three distinct materials into TiO2(B) anodes: aluminum fluoride (AlF3), lithium fluoride (LiF), and 1H,1H,2H, 2H-perfluorooctyltriethoxysilane (FAS) using a solution-based method. Among these fluorides containing composite anodes, FAS containing anodes delayed HER onset potentials …

Marine Cold-Spells In The California Current System: Modeling Changes In Frequency And Impacts On Endangered Species Habitat, Kaila J. Frazer, Heather M. Welch, Michael G. Jacox, Nerea Lezama-Ochoa, Briana Abrahms, Mercedes Pozo Buil, Scott R. Benson, Daniel M. Palacios, L. David Smith, Thomas A. Clay, Steven J. Bograd, Elliott L. Hazen

Faculty Research, Scholarly, and Creative Activity

Marine cold-spells are an understudied phenomena which can both negatively impact marine wildlife and provide thermal refugia for species displaced by climate change. To develop forward-looking and climate-ready management schemes, it is critical to examine how marine species respond to cold-spells, how long-term warming will affect marine cold-spells over the next century, and how these future cold-spells will in turn affect species of conservation concern, particularly in marine protected areas. To this end, we detect marine cold-spells across the California Current System, a productive Eastern Boundary Upwelling System, relative to a fixed baseline (1980–2009) and to a detrended time series …

Only One Percent Of Important Shark And Ray Areas In The Western Indian Ocean Are Fully Protected From Fishing Pressure, Jesse E.M. Cochran, Ryan Charles, Andrew J. Temple, Peter M. Kyne, Emiliano García-Rodríguez, Adriana Gonzalez-Pestana, Amanda Batlle-Morera, Théophile L. Mouton, Asia O. Armstrong, Christoph A. Rohner, Darren J. Coker, Royale S. Hardenstine, Alexander Kattan, Ashlie J. Mcivor, Viktor Nunes Peinemann, Kaitlyn A. O'Toole, Lea Palm, Eloise B. Richardson, David A. Ebert, For Full Author List, See Comments Below

Faculty Research, Scholarly, and Creative Activity

The Western Indian Ocean (WIO) is known for its high diversity of chondrichthyans (sharks, rays, and chimaeras). However, intense fishing pressure has led to severe population declines and local extinctions of several species. The Important Shark and Ray Area (ISRA) process is a collaborative, evidence-based approach used to identify critical habitat for chondrichthyans. We analysed ISRAs across the WIO to quantify the diversity of research methods used to identify them, evaluate spatial overlap with designated marine protected areas (MPAs), model the influence of several species- and jurisdiction-specific variables on ISRA delineation, and explore the importance of incorporating unpublished data into …

21st-Century Mangrove Expansion Along The Southeastern United States, Lucia I.A. Enes Gramoso, Dustin Carroll, Kyle C. Cavanaugh, Remi Bardou, Michael J. Osland, Tom Van Der Stocken

Faculty Research, Scholarly, and Creative Activity

Warming winter temperatures are driving range expansion of tropical, cold-sensitive mangroves into temperate ecosystems. Along the Atlantic coast of North America, the mangrove range limit is particularly sensitive to climate variability and historical data demonstrate that the mangrove-salt marsh ecotone on this coast has shifted recurrently during recent centuries. However, a comprehensive understanding of how this mangrove-salt marsh ecotone may shift in the future remains lacking. Here, we combine ensemble forecasting of mangrove distribution for the next century with high-resolution oceanographic dispersal simulations, phenological observations, and historical hurricane data to project future mangrove-salt marsh dynamics at the rapidly changing range …

Evaluating Impact Of Occupational Exoskeletons On Physical Fatigue Using Wearable Sensors And Deep Learning, Hardik Vora, Fatemeh Davoudi Kakhki, Armin Moghadam

Faculty Research, Scholarly, and Creative Activity

Musculoskeletal disorders remain a leading source of occupational injury in manufacturing and logistics industries, often resulting from repetitive lifting and load transfer tasks. While back-support exoskeletons have shown promise in alleviating physical strain, their biomechanical impact under realistic task conditions and their integration with intelligent monitoring systems require further exploration. This study investigates the efficacy of a passive lumbar-support exoskeleton in reducing muscle fatigue during manual material handling tasks by combining high-resolution surface electromyography (sEMG) data with a deep learning-based classification framework. Ten participants performed lifting and rotational (twisting) tasks with and without exoskeleton assistance, while EMG signals were collected …

Henze, Rosemary C., San Jose State University

Emeritus and Retired Faculty Biographies

Stanford University, Education (Language, Literacy & Culture), Ph.D. 1988

San Francisco State University, English (TESL), M.A. 1980

University of California, Santa Cruz, Art, B.A. 1974

Sjsu Erfa News, Winter 2026, San Jose State University, Emeritus And Retired Faculty Association

Emeritus and Retired Faculty Association (ERFA) Newsletter

Volume 39, No 2

Memory Effects In Many-Body Systems, Jeffrey Beckstrand

Master's Projects

This thesis investigates memory effects in many-body systems through the MoriZwanzig Formalism for projected dynamics of a Hamiltonian System which yields the Generalized Langevin Equation (GLE). The GLE is a stochastic differential equation (SDE) that studies the dynamics of observables under the effects of many other observables in the system. Although satisfying, the GLE has a term called the Memory Kernel that encodes the past of the system and introduces a computational challenge by introducing a non-Markovian property to the equation. The kernel is often approximated by introducing a delta function, which simplifies the computation, but at the loss of …

Modeling Sealed Deck Construction In Collectible Card Games Using Learning-To-Rank Approach, Michael Dinh Nguyen

Master's Projects

Artificial intelligence has demonstrated strong performance in complex decision-making domains such as chess and Go, motivating research into its application for games with even richer rules and combinatorial complexity. In collectible card games like Magic: The Gathering, deck construction from a constrained card pool is a critical and challenging task that requires evaluating card strength, synergy, and resource balance. This project explores whether machine learning, specifically learning-to-rank (LTR), can effectively model these human decision processes to construct competitive decks in a sealed format. The results found here can also be applicable to other areas of note, such as sports drafting …

Exploring Parents’ Perspective Of Outdoor Occupational Therapy Sessions, Harold Ho, Michelle Huynh, Christina Le, Amy Morrison

Master's Projects

Introduction: Outdoor play is recognized as critical for supporting children’s development across physical, cognitive, and social-emotional domains (Firby & Raine, 2022; Walker & Ray, 2024; Zhu et al., 2024). The current literature suggests that outdoor play strengthens executive functioning, early learning skills, and enhances social-emotional competency (Dinkel et al., 2019; Walker & Ray, 2024; Zhu et al., 2024). Furthermore, accessibility to outdoor play is shaped by contextual factors, including parental perceptions of safety, environmental barriers, and broader societal influences (Cox et al., 2025; Faulkner et al., 2025; Jelleyman et al., 2019). The research suggests that common parental concerns have emerged …

Searching For Cause Of Unexplained Protein Interaction With Multiple Assembly Methods, Gavin Anderson

Master's Projects

Research into colistin adjuvants has identified interactions between a host of proteins and proteins found within certain strains of bacteria. BLAST, a widely adopted local sequence alignment tool, was used to create a database containing the genomes of relevant bacterial strains, which would then be used to query against the previously identified proteins. Many of these strains do not have publicly available assemblies, which makes database construction difficult. CATwalk, a new naïve fragment extender, is first described in this paper and used to extend fragments of interest. BLAST results first identified short fragments with sufficient similarity, which can then be …

Detection And Characterization Of Cancer Using Cfdna Fragmentomic Analysis, Guneet Bhogal

Master's Projects

Cell-free DNA (cfDNA) fragmentomics has emerged as a promising non-invasive approach for detecting and characterizing cancer by analyzing DNA fragmentation patterns. These fragment patterns are unique and can be used to distinguish between tumor and healthy DNA. This paper uses machine learning models to detect cancer by evaluating Shannon entropy of fragment lengths at the first coding exon 1 regions and correlating them to targeted cancer genes. This approach was applied to two datasets consisting of samples with prostate, breast, and lung cancers. Our results indicated that exon 1 fragmentation entropy captures biologically relevant differences in cancer-specific chromatin organization and …

Combining Crispr And Nanoasv To Uncover The Rare Bacterial Communities Of The Human Oral Microbiome, Gilma Ruth Sevilla Alvarez

Master's Projects

Studying the oral microbiome is vital because its health implications are not contained to the mouth. Cariogenic bacteria cause tooth demineralization and oral microbes that translocate to extra-oral organ systems are linked to conditions like Alzheimer’s disease, heart disease, diabetes, and cancer. Some of these pathogens belong to the most abundant phyla in the oral cavity: Bacillota, Pseudomonadota, Bacteroidota, Actinomycetota, Spirochaetota, and Fusobacteriota, which together comprise 94% of the oral microbiome. This project uses CRISPR-Cas9 to deplete sequences from highly abundant phyla and the Eubacteria domain, enriching the remaining 6% of rarer taxa. Paired with NanoASV for single-nucleotide resolution, this …

Impact Of Cigarette Smoke On Immune And Stromal Cells, Justin Wong

Master's Projects

Cigarette smoke is a plight on human health, being a major contributor to lung diseases. The aryl hydrocarbon receptor (AHR) directs immune regulation and metabolic adaptation in response to environmental toxins. This study investigates transcriptomic changes between wild-type and AHR knockout mouse lung tissue under smoke and air conditions. Single-cell RNA sequencing data were generated by the Butcher Lab and analyzed in Seurat for differential gene expression (DGE) analysis. A two way ANOVA framework was used with DGE analysis to classify genes as smoke induced or suppressed in an AHR dependent or independent manner, and these gene sets were analyzed …

Estimating Prey Capture Attempts And Activity Costs In Foraging Emperor Penguins (Aptenodytes Forsteri) Using Integrated Biologging Data, Taylor Rose Azizeh

Master's Theses

To forage efficiently in patchy and unpredictable prey landscapes, marine predators must optimize energy intake while minimizing costs. Central place foragers like emperor penguins face greater energetic constraints during demanding periods of high investment like chick-rearing. I used high-resolution tri-axial acceleration, depth, and GPS data from 25 birds from two feeding seasons (2019 and 2022) to quantify prey capture attempts and a proxy for energy expenditure (overall dynamic body acceleration; ODBA) across dive types (epipelagic, mesopelagic, benthic), phases (descent, bottom, ascent), and over time at-sea. While prey capture attempts per minute did not differ when looking across dive types alone, …

Differential Impacts Of Wind And Waves On Albatross Flight Performance In Two Ocean Basins, Ian J. Maywar, Richard A. Phillips, Rachael A. Orben, Melinda G. Conners, Scott A. Shaffer, Lesley H. Thorne

Faculty Research, Scholarly, and Creative Activity

Background: Albatrosses can commute long distances to feed during the breeding season by avoiding energetically costly flapping flight. Energy from both wind and waves can be used to sustain soaring and reduce flapping flight, yet most studies of albatross flight have focused solely on the influence of wind. Methods: To examine how wind and waves allow albatrosses to reduce energetic costs by limiting flapping flight, we analyzed how the flap rates of five albatross species (370 individuals) across two ocean basins varied with wind speed and swell height. Results: For all study species, soaring using both wind and waves resulted …

Attitudes And Perception Of Lis Students Towards Artificial Intelligence(Ai), Shahzadi Humbhi, Shabbir Tareen, Alia Humbhi

Library Philosophy and Practice (e-journal)

Artificial Intelligence refers to computer systems that can think and behave like humans. It is becoming essential in the education system as it has the potential to transform the way of teaching and learning in an academic environment. Therefore, the current study aims to investigate LIS students' attitudes and perceptions of AI, as well as how these technologies benefit their academic performance. The study also identified barriers that LIS students confront when adopting AI tools. For this purpose, a survey questionnaire was designed to assess students' knowledge and attitudes concerning AI, as well as its applications to improve academic performance. …

Workplace Incivility And Well-Being: A Moderated Mediation Analysis Of Loneliness And Supervisor Support, Marie Rylance

Master's Theses

By building on previous research and addressing calls to examine the growing epidemic of loneliness, this study investigated how workplace incivility affects employee well-being and workplace outcomes, with attention to the roles of loneliness and supervisor support. Guided by the Conservation of Resources theory, workplace incivility was conceptualized as a resource-draining process that fosters stress states such as loneliness. A key contribution of this study was examining the process through which incivility impacts employees, by testing loneliness as a mediating mechanism and supervisor support as a potential moderator. Using data from 178 participants, regression and mediation analyses were conducted, as …

Ischool Student Research Journal, Vol.15, Iss.2

School of Information Student Research Journal

No abstract provided.

Supporting Literacy And The Scholarly Conversation Through Understanding Apa Citation Style, Vanessa Sztym

School of Information Student Research Journal

No abstract provided.

The Effects Of Educational Materials On Knowledge And Attitudes Toward Psilocybin, Lindsey Elise Wade

Master's Theses

Depression is one of the most prevalent and burdensome mental health conditions worldwide, affecting millions and contributing to over 700,000 deaths by suicide annually. Nearly half of patients with major depressive disorder fail to respond adequately to standard antidepressant treatments such as selective serotonin reuptake inhibitors (SSRIs). Psilocybin-assisted therapy (PAT) has emerged as a promising alternative for treatment-resistant depression (TRD), yet public understanding of this therapy remains limited. The present study examined whether a brief psychoeducational intervention could affect knowledge and attitudes toward PAT among members of the general public in the United States. Participants were randomly assigned to read …

A Functional Mri Meta-Analysis Encoding In Alzheimer’S Disease, Joanne Ha

Master's Theses

Alzheimer’s disease (AD) is the most common form of dementia and is characterized by episodic memory impairment. Numerous functional magnetic resonance imaging (fMRI) studies have examined brain activity differences between individuals with AD and age-matched controls during memory encoding. However, small sample sizes and methodological variability across studies have limited the ability to draw meaningful conclusions regarding brain activity underlying encoding impairments. We conducted a meta-analysis to identify consistent patterns of hyperactivity and hypoactivity in AD during episodic memory encoding. Using PubMed to identify studies that met our inclusion criteria, 1,002 studies were screened; ultimately, seven studies were included in …

Spartan Daily, December 4, 2025, San Jose State University, School Of Journalism And Mass Communications

Spartan Daily, 2025

Volume 165, Issue 42