Digital Commons Network^™

Building Predictive Chemistry Models, Christopher Browne

The Journal of Purdue Undergraduate Research

No abstract provided.

Addressing Hospital Staffing Shortages: Dynamic Surgical Tool Tracking And Delivery Using Baxter, Sthitapragyan Parida

The Journal of Purdue Undergraduate Research

Several hospitals face nurse staffing shortages for surgeries. This research focuses on building a system with a Baxter robot capable of identifying surgical tools using computer vision and delivering them to the surgeon on demand. This would deal with the issue of nurse unavailability during simple surgical procedures. The key aspects of the project were testing the accuracies of various artificial neural networks (ANNs) in classifying surgical instruments and programming Baxter to implement a surgical tool delivery system using magnets at the tip of its 7 degrees of freedom (DOF) robotic arms. The methodology consisted of first implementing algorithms to …

Growth Of Planetary Embryos: Conserving Mass During Planet Formation In The Oligarchic Growth Stage, Jennifer Larson

The Journal of Purdue Undergraduate Research

In order to fine-tune our current understanding of the formation of planets, we update the classic model of oligarchic growth to include mass conservation. In the early stages of planet formation, the protoplanetary disk contained only a swarm of planetesimals, rocky bodies with diameters of at most about 100 km, that collided together to form embryos greater than 1,000 km in diameter. Because planetesimals accrete, or accumulate, onto embryos, the surface mass density of the planetesimal swarm decreases with time. Here we describe surface mass density of the planetesimal swarm as the total initial surface mass density of the protoplanetary …

Simulating Low-Frequency Sonic Pulsations To Achieve Thrombolysis, Joseph C. Muskat, Matthew C. Pharris, Charles F. Babbs

The Summer Undergraduate Research Fellowship (SURF) Symposium

Cardiovascular thrombosis may result in critical ischemia to a range of anatomical regions, constituting a leading cause of death in the United States. Current invasive treatments for such arterial blockages often yield blood clot recurrence, resulting in repeated hospitalization of patients. This research aims to show how internally introduced pressure oscillations may be used to initiate thrombolysis. We present a novel computational model for determining the resonant frequency and corresponding deformation of an idealized thrombus. Sinusoidal pressure differences across the thrombus induce axial displacements of frequency dependent amplitude. The maximum peak displacement occurs at a resonant frequency of 73 Hz …

Uncertainty Quantification Visualization Tool To Simulate Porous Lithium-Ion Batteries, Ruotong Ji, Guang Lin, Lucas D. Robinson

The Summer Undergraduate Research Fellowship (SURF) Symposium

To maintain people’s fast-paced lifestyles, a more powerful and reliable rechargeable battery is critical. During the manufacturing process, electrode parameters such as cathode thickness, the porosity of the positive electrode and radius of negative active materials are subject to uncertainty. Such uncertainty may have a dramatic impact on the performance of the battery. To optimize its performance, it is critical to quantify uncertainty due to variation in electrode parameters and measure the response of the system through multiscale computer simulation. To achieve this goal, a porous lithium-ion battery uncertainty quantification and visualization tool has been created. This tool consists of …

Gpu/Cpu Performance Of Image Processing Tasks For Use In The Cam 2 System, Jonathan Cottom, Yung-Hsiang Lu, Young-Sol Koh

The Summer Undergraduate Research Fellowship (SURF) Symposium

Over the past several years, graphics processing units (GPU) have increasingly been viewed as the future of image processing engines. Currently, the Continuous Analysis of Many CAMeras (CAM²) project performs its processing on CPUs, which will potentially be more costly as the system scales to service more users. This study seeks to analyze the performance gains of GPU processing and evaluate the advantage of supporting GPU-accelerated analysis for CAM² users. The platform for comparing the CPU and GPU performance has been the NVIDIA Jetson TK1. The target hardware implementation is an Amazon cloud instance, where final cost …

Experimental Design And Construction For Critical Velocity Measurement In Spin-Orbit Coupled Bose-Einstein Condensates, Ting-Wei Hsu, Yong P. Chen

The Summer Undergraduate Research Fellowship (SURF) Symposium

Quantum simulation using ultra-cold atoms, such as Bose-Einstein Condensates (BECs), offers a very flexible and well controlled environment to simulate physics in different systems. For example, to simulate the effects of spin orbit coupling (SOC) on electrons in solid state systems, we can make a SOC BEC which mimics the behavior of SOC electrons. The goal of this project is to see how the superfluid property of BECs change in the presence of SOC. In particular, we plan to measure the critical velocity of an 87Rb BEC with and without SOC by stirring it with a laser. This laser needs …

Using Dissipative Particle Dynamics For Modeling Surfactants, Yuchen Zhang, Arezoo M. Ardekani

The Summer Undergraduate Research Fellowship (SURF) Symposium

Oil recovery is an industrial process that injects aqueous solutions into an oil reservoir to pump out crude oil and promote the oil production. The aqueous solution contains surfactants for reducing the interfacial tension (IFT) between aqueous phase and oil. The critical micelle concentration (CMC) is the concentration of surfactant above which micelles form and the interfacial tension reaches a plateau. Our research seeks to measure IFT and CMC for surfactants using dissipative particle dynamics (DPD) technique, which is a coarse-grained method based on the molecular dynamics. We first study how IFT is influenced by the surfactant concentration. Furthermore, another …

Studies Of Optical And Electronic Properties Of Nanoparticles For Solar Energy Conversion, Caitlin Kruse, Libai Huang

The Summer Undergraduate Research Fellowship (SURF) Symposium

The higher energy needs for today's technological society requires sustainable and renewable energy source, such as solar energy. This study focuses on using semiconducting quantum dots and fluorescent dyes as light absorbers for solar energy conversion devices such as solar cells. Quantum dots are small nanocrystals (usually 2-10 nm in diameter) with tunable absorbing properties. The smaller the dot, the shorter the wavelength being absorbed. Quantum dots are extremely efficient light absorbers and emitters. Fluorescent dyes have a high quantum yield. In order to examine the energy conversion, cadmium selenide (CdSe) quantum dots and Rhodamine 6G (R6G) dye were spin …

Dsmc Simulation Of Microstructure Actuation By Knudsen Thermal Force, Aaron Pikus, Israel Sebastiao, Andrew Strongrich, Alina Alexeenko

The Summer Undergraduate Research Fellowship (SURF) Symposium

In many industrial and research applications there is a need for vacuum sensors with higher accuracy and spatial resolution than what is currently available. Examples of target applications include high-altitude platforms, satellites and in-vacuum manufacturing processes such as freeze-drying of food and pharmaceuticals. In this connection, a novel pressure sensor, named Microelectromechanical In-plane Knudsen Radiometric Actuator (MIKRA), has been developed by at Purdue University. MIKRA is based on Knudsen thermal forces generated by rarefied flow driven by thermal gradients within the microstructure Thus, the goal of this work is to model the rarefied gas flow in the MIKRA sensor under …

Bio-Inspired Composite Hydrogels For Osteochondral Regenerative Engineering, Grant N. Gellert, Liangju Kuang, Chunhui Jiang, Nur P. Damayanti, Joseph Irudayaraj, Meng Deng

The Summer Undergraduate Research Fellowship (SURF) Symposium

Treatment of osteochondral defects encompassing injury or degeneration to both the articular cartilage as well as the underlying subchondral bone presents a significant medical challenge. Current treatment options including autografts and allografts suffer from limited availability and risk of immunogenicity, respectively. The long term goal of this work is to develop an integrated scaffold system for treatment of osteochondral defects via in situ regeneration of bone, cartilage and the bone-cartilage interface. Hydrogels composed of polymer networks swollen in water provide an attractive biomaterial platform for regeneration of cartilage. In the present study, we have developed a novel composite hydrogel consisting …

Analysis Of The Fabrication Conditions In Organic Field-Effect Transistors, Rachel M. Rahn, Yan Zhao, Jianguo Mei

The Summer Undergraduate Research Fellowship (SURF) Symposium

Polymer-based organic field-effect transistors have raised substantial awareness because they enable low-cost, solution processing techniques, and have the potential to be implemented in flexible, disposable organic electronic devices. The performance of these devices is highly dependent on the processing conditions, as well as the intrinsic properties of the polymer. Processing conditions play an important role in semiconductor film formation and device performance. These factors may provide an important link between structure and performance. In this study, an empirical analysis tool, Process Scout, was applied to assess processing factors such as polymer concentration and silicon modification. This sanctioned the creation of …

Model Selection For Gaussian Mixture Models For Uncertainty Qualification, Yiyi Chen, Guang Lin, Xuan Liu

The Summer Undergraduate Research Fellowship (SURF) Symposium

Clustering is task of assigning the objects into different groups so that the objects are more similar to each other than in other groups. Gaussian Mixture model with Expectation Maximization method is the one of the most general ways to do clustering on large data set. However, this method needs the number of Gaussian mode as input(a cluster) so it could approximate the original data set. Developing a method to automatically determine the number of single distribution model will help to apply this method to more larger context. In the original algorithm, there is a variable represent the weight of …

Web-Based Fragment Library, Junjie Wang, Lyudmila Slipchenko

The Summer Undergraduate Research Fellowship (SURF) Symposium

A new polarized force field BioEFP for modeling process in biology is far superior in accuracy to the common classical force fields. One of the main shortcomings of BioEFP is that the parameters are not readily available, thus it will take a lot of time to be calculated.

Developing an online repository of pre-computed fragment parameters and a similarity algorithm will allow ascribing each fragment of a biological macromolecule to a pre-defined fragment.

This study incorporates three parts to create the online repository. First, the visual design for the website using the Hypertext Markup Language and the Cascading Style Sheets …

Kinetic Modeling Of Roll To Roll Rfcvd Plasma, Kudzo S. Ahegbebu, Siva Sashank Tholeti, Alina A. Alexeenko

The Summer Undergraduate Research Fellowship (SURF) Symposium

Roll-to-roll radio frequency plasma enhanced chemical vapor deposition (R2R RFCVD) is a technique for large-scale synthesis of high quality graphitic nanopetals. Graphitic nanopetals are petal-like graphene structures with remarkable electrical and mechanical properties with major industrial applications such as microsupercapacitors. RFCVD uses a non-equilibrium plasma with high energy electrons to catalyze chemical reactions, induce the creation of free radicals, and promote otherwise high temperature chemistry in a low temperature environment. Understanding how bulk plasma characteristics (particularly, power and number densities) vary with changing reactor parameters is an important step towards optimizing synthesis techniques. In our present work we use the …

Effect Of Helium Ions Energy On Molybdenum Surfaces Under Extreme Conditions, Joseph Fiala, Jitendra K. Tripathi, Sean Gonderman, Ahmed Hassanein

The Summer Undergraduate Research Fellowship (SURF) Symposium

Plasma facing components (PFCs) in fusion devices must be able to withstand high temperatures and erosion due to incident energetic ion radiations. Tungsten has become the material of choice for PFCs due to its high strength, thermal conductivity, and low erosion rate. However, its surface deteriorates significantly under helium ion irradiation in fusion-like conditions and forms nanoscopic fiber-like structures, or fuzz. Fuzz is brittle in nature and has relatively lower thermal conductivity than that of the bulk material. Small amounts of fuzz may lead to excessive contamination of the plasma, preventing the fusion reaction from taking place. Despite recent efforts, …

Development Of A Scalable Synthesis Of Hp-Β-Cd Pluronic Polyrotaxanes, Joseph L. Skulsky, Elizabeth A. Slepko, Bradley P. Loren, David H. Thompson

The Summer Undergraduate Research Fellowship (SURF) Symposium

Polyrotaxanes are polymers that have macrocycles threaded onto them, analogous to beads threaded onto a string. These materials are used for a variety of different biomedical applications.^1-3 The Thompson group has been developing 2-hydroxypropyl-β-cyclodextrin (HP-β-CD) polyrotaxanes as therapeutics for the treatment of Niemann-Pick Type C (NPC) disease. NPC is a debilitating genetic disorder where cholesterol accumulates in the lysosomes of cells.⁴ Developing a scalable process is crucial for the advancement of these materials as NPC therapeutics. The goal of this project is to optimize the only protocol for the synthesis of HP-β-CD/Pluronic polyrotaxanes in order to develop a …

Deconstructing Cation-Pi Interactions: Understanding The Binding Energies Involved With Metal And Aromatic Amino Acid Residues, Jen E. Werner, Lyudmila V. Slipchenko, Yen Bui

The Summer Undergraduate Research Fellowship (SURF) Symposium

The Effective Fragment Potential (EFP) method is a computationally efficient technique for describing non-covalent interactions, such as hydrogen bonding and van der Waals forces. Cation-pi interactions are a type of non-covalent interactions and are thought to be important in biological processes, such as permittivity of ion channels. The goal of our work is to establish that the EFP method reliably describes the strength, directionality, and composition of cation-pi interactions. Optimal geometries were found for a series of biologically relevant cations (K⁺, Li⁺, Na⁺, Ca²⁺, and Mg²⁺) and aryl moieties appearing …

Adsorption Mechanisms Of Palladium On The Tobacco Mosaic Virus Surface, Gloriia D. Novikova, Oluwamayowa Adigun, Erin Retzlaff-Roberts, Michael T. Harris

The Summer Undergraduate Research Fellowship (SURF) Symposium

Organic-inorganic materials synthesis using biological templates has recently drawn immense attention of researchers. Biotemplating has shown to be an efficient and economic means of nanomaterials production. Naturally stable, readily available and genetically malleable, Tobacco Mosaic Virus (TMV) is one of the most extensively studied and characterized biotemplates. Particularly, templated synthesis using TMV has produced high quality nanorods and nanowires that have been applied to batteries, memory devices and catalysis. The fundamental mechanisms, governing the adsorption of palladium on the TMV Wild Type and genetically modified versions (TMV1Cys and TMV2Cys), are not fully understood; this knowledge, however, is essential for future …

Implementation Of A Speech Recognition Algorithm To Facilitate Verbal Commands For Visual Analytics Law Enforcement Toolkit, Shubham S. Rastogi, David L. Wiszowaty, Hanye Xu, Abish Malik, David S. Ebert

The Summer Undergraduate Research Fellowship (SURF) Symposium

The VALET (Visual Analytics Law Enforcement Toolkit) system allows the user to visualize and predict crime hotspots and analyze crime data. Police officers have difficulty in using VALET in a mobile situation, since the system allows only conventional input interfaces (keyboard and mouse). This research focuses on introducing a new input interface to VALET in the form of speech recognition, which allows the user to interact with the software without losing functionality. First an Application Program Interface (API) that was compatible with the VALET system was found and initial code scripts to test its functionality were written. Next, the code …

Synthesis, Characterization, And Thermoelectric Properties Of Radical Siloxanes, Arnold J. Eng, Bryan Boudouris, Edward P. Tomlinson, Martha Emily Hay

The Summer Undergraduate Research Fellowship (SURF) Symposium

More than half of the annual energy consumption in the United States is lost as waste heat. Polymer-based thermoelectric devices have the potential to utilize this waste heat both sustainably and cost-effectively. Although conjugated polymers currently dominate research in organic thermoelectrics, the potential of using polymers with radical pendant groups have yet to be realized. These polymers have been found to be as conductive as pristine (i.e., not doped) poly(3-hexylthiophene) (P3HT), a commonly-used charge-transporting conjugated polymer. This could yield promising avenues for thermoelectric material design as radical polymers are more synthetically tunable and are hypothesized to have a high Seebeck …

Optical Emission Spectroscopy Diagnostics Of Cold Plasmas For Food Sterilization, Abhijit Jassem, Michael Lauria, Russell Brayfield Ii, Kevin M. Keener, Allen L. Garner

The Summer Undergraduate Research Fellowship (SURF) Symposium

There is a growing need for economical, effective, and safe methods of sterilizing fresh produce. The most common method is a chlorine wash, which is expensive and may introduce carcinogens. High voltage cold atmospheric pressure plasmas are a promising solution that has demonstrated a germicidal effect; however, the responsible chemical mechanisms and reaction pathways are not fully understood. To elucidate this chemistry, we used optical emission spectroscopy to measure the species produced in the plasma generated by a 60 Hz pulsed dielectric barrier discharge in a plastic box containing various fill gases (He, N₂, CO₂, dry …

Classification And Visualization Of Crime-Related Tweets, Ransen Niu, Jiawei Zhang, David S. Ebert

The Summer Undergraduate Research Fellowship (SURF) Symposium

Millions of Twitter posts per day can provide an insight to law enforcement officials for improved situational awareness. In this paper, we propose a natural-language-processing (NLP) pipeline towards classification and visualization of crime-related tweets. The work is divided into two parts. First, we collect crime-related tweets by classification. Unlike written text, social media like Twitter includes substantial non-standard tokens or semantics. So we focus on exploring the underlying semantic features of crime-related tweets, including parts-of-speech properties and intention verbs. Then we use these features to train a classification model via Support Vector Machine. The second part is to utilize visual …

Nanomechanics Simulation Toolkit - Dislocations Make Or Break Materials, Michael N. Sakano, Alejandro Strachan, David Johnson, Mitchell Wood

The Summer Undergraduate Research Fellowship (SURF) Symposium

The goal of computational material science is to improve existing materials and design new ones through mathematical calculations. In particular, molecular dynamic simulations can allow for visualization of dislocations in a material, along with its resulting behavior when under stress. For example, plastic deformation and strain hardening result from the movement, multiplication and interaction of dislocations within the crystal structure. A simulation tool to study these phenomena was developed for the nanoHUB web resource as a part of the Network for Computational Nanotechnology at Purdue University and targets audiences ranging from undergraduate students to researchers. We created a user-friendly environment …

Predictors Of Students’ Achievement In A Blended Learning Course, Xingyu Zhou, Cindy (Xin) Chen, Casey Smith, Jennifer Deboer

The Summer Undergraduate Research Fellowship (SURF) Symposium

Massive Open Online Courses (MOOCs) have been at the center of media attention and hyperbole since 2012. Physics I: Classical Mechanics was a physics course offered by an elite private university in the northeastern United States in the fall of 2014. This course was offered in a blended learning format using a MOOC platform. There were 476 students enrolled in the course, but only 266 of them completed the course. In order to better understand the behavior and academic performance of students in this course, several mathematical models were used to examine the relationship between their grades and their use …

Measurement And Calibration Of Centrifugal Compressor Pressure Scanning Instrumentation, Jose R. Rivas, Fangyuan Lou, Herbert "Trey" Harrison, Nicole Key

The Summer Undergraduate Research Fellowship (SURF) Symposium

The compressor is a key component of a jet engine necessary to compress air for the combustion process. Research to optimize compressor efficiency through the understanding of air flow behavior has led to increased efforts in creating modern compressor test facilities. In collaboration with Honeywell, the High Speed Compressor facility at Zucrow Laboratories has built a centrifugal compressor test cell with instrumentation to measure the temperatures and pressures of the air flow. This facility conducts experiments to characterize the compressor performance at varying conditions. During prolonged experimentation cycles, it is difficult to acquire reliable pressure measurements of the flow, as …

Quantifying Groundwater/Surface-Water Interactions In Tributaries To The Wabash River Using Radon‐222 And Other Environmental Isotopes, Philine Bogeholz, Marty Frisbee

The Summer Undergraduate Research Fellowship (SURF) Symposium

Groundwater/surface-water interactions have not been extensively studied in tile-drained watersheds where natural recharge processes are “short circuited” by routing water out of the soil-zone and into nearby drainage ditches. This practice likely impacts baseflow generation in the Wabash River of Indiana. If true, then how is baseflow affected in small tributaries to the Wabash? To answer this question, we investigated groundwater/surface-water interactions in four small tributary drainages to the Wabash River and Sugar Creek. These drainages share common geologic characteristics and are deeply incised providing a window into groundwater flow processes. We sampled these drainages for general geochemistry, radon-222 ( …

Overview Of Paul E. Sabine’S 1931 Paper: A Critical Study Of The Precision Of Measurement Of Absorption Coefficients By Reverberation Methods, Yangfan Liu

Publications of the Ray W. Herrick Laboratories

Overview of Paul E. Sabine’s 1931 paper: A Critical Study of the Precision of Measurement of Absorption Coefficients by Reverberation Methods

Final Report For 2015 Er&L + Ebsco Library Fellowship Research Project, Tao Zhang, Xi Niu

Libraries Reports

We report findings from a comprehensive assessment of e-book user experience (search and information seeking) from transaction logs, e-book usage data, and user tests. There are differences between e-book and general searches in terms of query length, number of queries and actions per session. There are also distinctive reading patterns from e-book usage data. The user tests showed that experience levels with e-books and features of e-book platforms influenced users’ information seeking behavior. Results of the assessment have significant implications for the design of e-book features to support users’ reading strategies and help libraries create a consistent e-book user experience.

Human-Machine Cooperation In Large-Scale Multimedia Retrieval: A Survey, Kimiaki Shirahama, Marcin Grzegorzek, Bipin Indurkhya

The Journal of Problem Solving

Large-Scale Multimedia Retrieval(LSMR) is the task to fast analyze a large amount of multimedia data like images or videos and accurately find the ones relevant to a certain semantic meaning. Although LSMR has been investigated for more than two decades in the fields of multimedia processing and computer vision, a more interdisciplinary approach is necessary to develop an LSMR system that is really meaningful for humans. To this end, this paper aims to stimulate attention to the LSMR problem from diverse research fields. By explaining basic terminologies in LSMR, we first survey several representative methods in chronological order. This …