Digital Commons Network^™

The Impact Of Mnar Attrition On Estimation Of Latent Growth Curve Models With Binary Observed Variables, Jason T. Newsom, Brian T. Keller, Mallory R. Kroeck, Nicholas A. Smith

Psychology Faculty Publications and Presentations

A Monte Carlo simulation was used to evaluate the performance of latent growth curve (LGC) modelswith binary observed variables when the attrition pattern was missing not at random (MNAR) for fivetime points. Parameter and standard error biases for three estimation methods were compared:weighted least squares with mean and variance adjustment (WLSMV), categorical robust marginal max-imum likelihood (categorical MLR), and Bayes. The results indicated that robust diagonal weightedleast squares paired with multiple imputation (MI) performed best when values were missing at ran-dom. When data were missing not at random, Bayesian estimates performed best.

Arylation Of Nitrogen, Oxygen And Carbon Nucleophiles By Aryl(Tmp)Iodonium Salts, Joseph Jordan Hatton

Dissertations and Theses

Substituted aromatic rings are present in industry in a plethora of organic molecules such as pharmaceuticals, agrochemicals, materials and beyond. Therefore, methods for broadly installing aryl rings into other compounds to create substituted aromatic rings are valuable to many organic chemists. Historically these transformations are achieved through methods such as nucleophilic aromatic substitution and metal catalyzed cross-coupling. Nucleophilic aromatic substitution is a user-friendly method in this space but is limited by reliance on specific electronics. Metal catalyzed cross-coupling reduced the dependence on electronics in this space, but metals are generally unattractive reagents due to high costs, toxicity and challenges with …

An Integrated Framework For Memory-Centric Analysis: From Trace Collection To Co-Design, Dhruv Gajaria, Prajwal Challa, Yasodha Suriyakumar, Joseph Manzano, Nathan Tallent, Andrés Márquez

Computer Science Faculty Publications and Presentations

IntroductionThe memory wall phenomenon—where advances in processor performance significantly outpace those in memory subsystems-poses a fundamental challenge for contemporary computing systems. In memory-bound applications, memory subsystem behavior dominates performance, yet existing analysis approaches present significant limitations: detailed microarchitectural simulators require days to weeks to simulate modest workloads; hardware performance counters provide only aggregate statistics that obscure temporal and spatial access patterns; and scaled simulation approaches face challenges in capturing contention effects, bandwidth saturation, and interference patterns that emerge at larger scales. These limitations reflect a processor-centric design philosophy—in both performance analysis tools and system co-design methodologies—that is increasingly misaligned with …

The Impact Of Optimization Approximation Algorithms On The Performance Of The Bht-Qaoa, Ali Al-Bayaty, Marek Perkowski

Electrical and Computer Engineering Faculty Publications and Presentations

This article investigates the performance impact of five classical optimization approximation algorithms on our previously introduced quantum search algorithm, termed the Boolean–Hamiltonians Transform for Quantum Approximate Optimization Algorithm (BHT-QAOA), to effectively search for all best-approximated solutions for Boolean-based problems. These optimization approximation algorithms are BFGS, L-BFGS-B, SLSQP, COBYLA, and COBYQA. Their performance impact is evaluated and compared using two proposed performance metrics—(i) the final number of function evaluations (the lower numbers denote the best optimization approximation algorithms) and (ii) the final quality of qubit measurements (the higher values indicate all best-approximated solutions were found for a problem). Arbitrary classical Boolean …

Improving Explainability And Interpretability Of Neural Networks Via Hyperparameter-Extended Influence Functions, William Breslin

Dissertations and Theses

Understanding how model predictions and training outcomes vary with changes in data, features, and modeling choices is central to explainable artificial intelligence. This dissertation introduces a unified framework for explainability by generalizing classical influence functions to encompass user-defined hyperparameters embedded in the training loss, model architecture, or data representation. By extending influence functions in this way, the framework broadens their applicability and integrates multiple explainability techniques into a single, coherent approach. It provides a common mathematical foundation linking data impact, feature importance, and model design analysis, and supports a broad class of additional explainability analyses beyond these settings. The demonstrated …

Design And Implementation Of Error Estimators For Finite Element Eigenvalue Problems, Gabriel Esteban Pinochet Soto

Dissertations and Theses

We present three publications, all encompassed under the umbrella of a posteriori error estimation theory for eigenvalue problems for finite element discretizations. The central objective of the research is the development of a general framework for the study of reliable estimation of eigenvalues and eigenspaces. We introduce applications to problems of theoretical interest as well as problems arising in real-life scenarios, such as optical fibers. The first paper focuses on the implementation of a dual-weighted residual error estimator for a nonselfadjoint eigenvalue problems arising from the study of leaky modes in optical fibers---Maxwell's equations, Perfectly Matched Layers, and a conforming …

Vegetated Canopy Heterogeneity Footprints In The Roughness Sublayer, Giulia Salmaso, Raul Bayoan Cal, Marc Calaf

Mechanical and Materials Engineering Faculty Publications and Presentations

Turbulent flows over horizontally homogeneous rough surfaces are categorized as rough‐wall boundary layer flows, while flows over homogeneous vegetated canopies are better described through a mixing‐layer analogy. At present, numerous studies have investigated canopy density as a transition mechanism between rough‐wall and mixing‐layer‐type flows. Yet, most considered canopies have been spatially homogeneous, with few exceptions investigating agricultural arrangements. However, most vegetated canopies are not homogeneously distributed, but instead contain gaps and spatial heterogeneities of different scales. In these cases, it remains unclear which are the dominant flow traits, and how spatial heterogeneity affects them. To help overcome these knowledge gaps, …

Local And Indigenous Knowledge, Innovation, And Sustainable Development: Creating Sustainable Futures Amidst Crisis Conditions At The Community Level, Carlos Andrés Arias

Dissertations and Theses

In 1987, the Brundtland Commission's Our Common Future (1987) made clear the need to reject longstanding development processes and focus on sustainable development. The Commission stressed that actual sustainable development integrates three elements: social development, economic development, and environmental protection. Though developed nations have achieved economic growth through conventional and extractive development practices, these practices have intensified natural disasters driven by climate change, increased food insecurity, and deepened poverty. This has acutely impacted Indigenous and local communities, many of whom face crisis conditions, such as war, terrorism, civil disorder, and their aftermath. Even so, many of these communities successfully implement …

Effects Of Recurving Western North Pacific Tropical Cyclones On Downstream Ridges Over Pacific-Western North America, Xiaoyu Bai, Dmitri A. Kalashnikov, Paul Loikith, Siiri Bigalke, Alex Mitchell, Mingfang Ting, Lance F. Bosart, Deepti Singh

Geography Faculty Publications and Presentations

Recurving tropical cyclones (TC) in the Western North Pacific can affect the atmospheric circulation over Pacific‐Western North America (PWNA) via interactions with the midlatitude circulation. Using reanalysis and tropical cyclone best‐track data, we examine how recurving TCs that make extratropical transition modulate 500‐hPa ridge characteristics over PWNA during the peak (June‐September) and late (October–December) seasons. TCs recurving at lower latitudes are associated with more intense and poleward‐centered ridges relative to TCs recurving at higher latitudes, and TCs that recurve farther west are associated with relatively westward‐centered ridges. Characteristics of the prevailing midlatitude flow such as its amplitude and positioning relative …

Oregon State Rank Assessment For Wiens' Dwarf Mistletoe (Arceuthobium Abietinum Ssp. Wiensii), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Wiens' dwarf mistletoe (Arceuthobium abietinum ssp. wiensii) using NatureServe methodology, 2026.

Oregon State Rank Assessment For Bedstraw Broomrape (Aphyllon Epigalium Ssp. Epigalium), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for Bedstraw broomrape (Aphyllon epigalium ssp. epigalium) using NatureServe methodology, 2026.

Crossing Boundaries: Brachinites And Their Diverse Asteroidal Origins, B. G. Rider-Stokes, F. A. Davies, T. H. Burbine, E. Maclennan, R. C. Greenwood, S. L. Jackson, M. Anand, Daniel Sheikh, M. M. Grady

Geology Faculty Publications and Presentations

Brachinite meteorites are typically linked to the olivine-rich A-type asteroids. In this study, however, they appear to exhibit unexpected spectral diversity. Spectroscopic analysis of seven meteorites from the brachinite clan reveals two distinct populations in band parameters, overlapping with both the A-type and S-complex asteroids. This dual association shows that a single meteorite group can originate from multiple asteroid taxonomies. Notably, one S-complex-like specimen, Northwest Africa (NWA) 14,635, displays band parameters similar to those of asteroid (65803) Didymos, the target of the European Space Agency's (ESA) ongoing Hera mission. These results underscore the value of spectroscopic characterization of poorly understood …

A Plague On Both Your Houses: Archetypes Of Political Choice, Martin Zwick

Complex Systems Faculty Publications and Presentations

In times of political polarization, we are well-advised to heed Spinoza’s injunction, “Not to lament, not to curse, but to understand.” Understanding can be facilitated by ideas about the archetypal structures of political choice. This paper offers a systems theoretic analysis of a set of such archetypes focusing solely on their structures and not advocating any specific political positions. The primary question that must be answered is whether available or desirable political choices are dyadic or triadic, and if dyadic, whether the two alternatives of the dyad should be viewed as good versus bad or as complementary.  Various modes of …

Rosenzweig's Elements And Universal History, Martin Zwick

Complex Systems Faculty Publications and Presentations

This paper uses Rosenzweig’s conception of the three elements of God, World, and Human from The Star of Redemption in a model of universal history. The model also has some relation to Rosenzweig’s geopolitical essay, Globus, which is very different from the meta-historical Star. Based on a systems-theoretic schema of events and processes, the model views human history in terms of three linked processes: a primary process labeled “World” – the origin and development of human society embedded in nature, a secondary process labeled “God” – the origin and development of the Axial religions and philosophies, and a …

An Infinite Set Of One-Range Addition Theorems Without An Infinite Second Series, For Slater Orbitals And Their Derivatives, Applicable To Multiple Coordinate Systems, Jack C. Straton

Physics Faculty Publications and Presentations

Addition theorems have been indispensable tools for the reduction of quantum transition amplitudes. They are normally utilized at the start of the process to move the angular dependence within plane waves, Coulomb potentials, and the like, into a sum over spherical harmonics that allows the angular integration to be carried out. These have historically been “two-range” addition theorems, characterized by the two-fold notation r>=Max[r1,r2] and r< =Min[r1,r2] and comprising a single infinite series. More recently, “one-range” addition theorems have been created that have no such piecewise notation, but at the cost of the introduction of another infinite series. We use a very different approach to derive an infinite set of addition theorems for Slater orbitals, hydrogenic and Hylleraas wave functions, and so on, that retain the one-range variable dependence but have, at worst, a finite second series rather than an infinite one. In addition, unlike previous addition theorems, they are applicable to more than one coordinate system. One of these addition theorems may also be used for Yukawa-like functions that may appear late in the reduction of amplitude integrals, and we show its utility for an integral that has stubbornly defied reduction to analytic form for nearly sixty years. Finally, we craft indefinite integrals of 15 half-integer Macdonald functions multiplied by (inverse) powers and negative exponentials containing squares of the integration variable.

Evaluating Acridones As Novel Therapeutics For Human Babesiosis, Pratap Vydyam, Elizabeth Zhang, Papireddy Kancharla, Rozalia A. Dodean, Jane X. Kelly

Chemistry Faculty Publications and Presentations

Human babesiosis is an emerging tick-borne disease caused by Babesia parasites, most notably Babesia microti and Babesia duncani in North America and Babesia divergens in Europe. Infections can be severe or persistent or relapse despite treatment, and current therapeutic options remain limited, underscoring the urgent need for new and effective treatment options. Acridone derivatives originally developed as potent antimalarial agents against multiple life cycle stages of the malaria parasites were evaluated for their antibabesial activity using continuous in vitro culture systems of B. duncani and B. divergens. Lead candidates were assessed for selectivity against human cell lines to establish preliminary …

Detecting Eigenvectors Of An Operator That Are Near A Specified Subspace, David Darrow, Jeffrey S. Ovall

Mathematics and Statistics Faculty Publications and Presentations

In modeling quantum systems or wave phenomena, one is often interested in identifying eigenstates that approximately carry a specified property; scattering states approximately align with incoming and outgoing traveling waves, for instance, and electron states in molecules often approximately align with superpositions of simple atomic orbitals. These examples—and many others—can be formulated as the following eigenproblem: given a selfadjoint operator L on a Hilbert space H and a closed subspace W ⊂ H, can we identify all eigenvectors of L that lie approximately in W? We develop an approach to answer this question efficiently, with a userdefined tolerance and range …

Holding The Line: The Existential Threat To Dei Language And Values, Terrance Fitzsimmons, Larry Martinez, Jennifer Bishop, Darryl Rice, Florence Villesèche

Psychology Faculty Publications and Presentations

Purpose – This article critically analyses and critiques the operationalisation of the Trump administration’s anti- DEI policies on Diversity, Equity and Inclusion (DEI) initiatives in the United States of America and beyond. It specifically examines the attempt to silence DEI scholarship and practice, assessing the broader implications for social justice and global progress towards equity. The article also positions these attacks as an existential threat to DEI scholarship, scholars and practitioners, with the potential to reverse progress made since the adoption of the Universal Declaration of Human Rights in 1948. The article serves as a call to action, urging the …

Improving The Circuit Realization Of Grover’S Quantum Search Algorithm By Replacing Hadamard With √ × Gates, Ali Al-Bayaty, Ali Al-Shuwaili, Abbas Alzubaidi, Marek Perkowski

Electrical and Computer Engineering Faculty Publications and Presentations

Jozsa, Bernstein-Vazirani, and Grover, utilize Hadamard gates to create uniform superposition states for the input qubits of an oracle. However, Hadamard gates are non-native (non-supported) gates in all real quantum computers. For this reason, Hadamard gates are considered cost-expensive gates when realizing (transpiling) such algorithms into a real quantum computer. This paper introduces a new methodology for cost-effective transpilation of Grover’s algorithm into real quantum computers, by replacing all Hadamard gates with √ X gates. In quantum computing, the Hadamard and √ X gates create uniform superposition states of a qubit on the Xaxis and Y-axis of the Bloch sphere, …

Accelerated Coupled Mode Model For Fiber Laser Amplifiers As An Averaged Dynamical System, Rebecca Bryant, Jacob Grosek, Jay Gopalakrishnan

Mathematics and Statistics Faculty Publications and Presentations

We apply a known theorem for simplifying dynamical systems with bounded error to a specific optical fiber waveguide problem, thereby supplementing the physical intuition and heuristics used in the optics community with proper mathematical justification. Using techniques from the averaging theory of dynamical systems, a reliable accelerated model based on the coupled mode theory (CMT) approach for a common fiber laser amplifier application is derived. Computational testing reveals that this accelerated model achieves a ∼4000x increase in computational speed compared to the CMT model while preserving high accuracy in key figures of merit such as output power and amplification efficiency. …

Rethinking College Curricula: Preparing Students With The Skills Needed For Successful Cultural Resource Management (Crm) Careers, Kate Monti Barcalow, Shelby L. R. Anderson

Anthropology Faculty Publications and Presentations

Postsecondary education is at the forefront of preparing the next generation of cultural resource management (CRM) practitioners for the workforce. We conducted a study from 2022 to 2023 to gain perspective on improving postsecondary CRM curricula in order to better prepare students for careers in CRM. Our research included semi-structured interviews of nine key consultants with careers in CRM, along with a survey of the broader CRM professional community in the Pacific Northwest, USA. Results from the research identified the necessary skills for new college graduates, areas where CRM programs could improve their curricula, and various approaches in and out …

Otolith Stable Isotopes And Maaori Archaeology: Marine Paleoclimate Data For Northern Aotearoa New Zealand, Reno Nims, Caitlin Smith, Matthew Campbell

Anthropology Faculty Publications and Presentations

Marine paleoclimate records for the last 1,000 years are scarce in the southwest Pacific, limiting our understanding of complex environmental changes that may have affected Ma ori seascapes and fisheries. We seek to begin filling this knowledge gap by studying stable oxygen (δ18O) and carbon (δ13C) isotopes in archaeological and modern otoliths from ta mure (Australasian snapper, Chrysophrys auratus), which provide information about water temperature, salinity, and fish diet and metabolism. Our results show that fourteenth and fifteenth century ta mure otoliths recorded environmental conditions that are comparable to twentieth century temperatures, with some evidence for anomalously warmer seas and/or …

Multiple-Valued Quantum Automata For Robotics, Yuchen Huang

Dissertations and Theses

This dissertation introduces a new type of quantum automata, their encoding and circuit realization. I concentrate on possible applications in robotics. Several methods and application of quantum automata and quantum circuit-based controllers for elementary robotic systems, with a focus on humanoid robot motion, emotion, and behavior generation are illustrated in detail. The research introduces several novel methodologies that bridge quantum computing principles with robotic control, aiming to overcome the limitations of classical deterministic and probabilistic approaches.

The dissertation first presents a quantum-circuit-based framework for generating non-repetitive and expressive (e)motions in a humanoid robot actor, using superposition and entanglement to produce …

A Comprehensive Calibration Framework For The Northwest River Forecast Center, Geoffrey Walters, Cameron Bracken, Brad Gillies, Leah Pope, Henry Pai, Sonali Chokshi, Victor Stegemiller, Stephen King, Julie Bracken, Taylor Dixon, Multiple Additional Authors

Mathematics and Statistics Faculty Publications and Presentations

We present a comprehensive framework developed by the Northwest River Forecast Center for calibrating hydrologically diverse basins. The framework includes models for snow, soil moisture, routing, channel loss, and consumptive use. Data inputs include a wide range of open-access datasets for meteorology, land use, topography, and land cover. The framework uses conceptual hydrologic models to handle basins with various hydrologic regimes including rain-driven and snowmelt-dominated basins. We also develop a flexible automatic calibration system that can handle numerous unobservable model parameters in a computationally efficient manner. A single-basin automatic calibration run can typically be completed on a modern laptop in …

Toxicity, Chemistry, And Public Health Relevance Of Emerging Nicotine Analog Vapes, Pods, And Pouches., Rhea Raghu, Mohana Sengupta, Karen Lin, Felix Effah, Robert M. Strongin, Irfan Rahman

Chemistry Faculty Publications and Presentations

Electronic nicotine delivery system manufacturers, such as Charlie's Holdings Inc., ECBlend, Outlaw, and NicRiver, have recently introduced nicotine analogs, such as 6-methyl nicotine, 6-MN ("Metatine"), and nicotinamide, NA ("Nixamide," "Nixodine," or "Nixotin-free base and salt") in products to circumvent the U.S. FDA's premarket tobacco product application (PMTA) requirements. Marketed as "tobacco-free," "PMTA-exempt," or "FDA-approved," these compounds now appear in oral nicotine pouches and disposable bars/vapes from brands such as Outlaw Dip, Kumi-Six, SBX, Katchmi, and Spree Bar under proprietary labels including "NoNic6," "Metatine," or "NIC-SAFE." These products often mimic the appeal of conventional nicotine delivery systems, with extensive use of …

Forest Fires Increase Vulnerability To Midwinter Rain-On-Snow Snowmelt In The Western Oregon Cascades, Sage C. Ebel, Kelly Gleason

Environmental Science and Management Faculty Publications and Presentations

Forest fires and rain-on-snow events in the seasonal snow zone of the Pacific Northwest are increasing in frequency and magnitude, yet the combined impacts of these events on snowpack and water resources remain poorly understood. We show that forest fires doubled midwinter snowmelt proportions in 2023 and 2024 compared to unburned reference sites in the western Oregon Cascades. Data from snow monitoring and micrometeorological stations installed across an elevational gradient revealed increased snowpack vulnerability during midwinter rain-on-snow events, where we observed more snowmelt per rain-on-snow event in the burned forest, indicating higher vulnerability of these snowpacks to rapid melt, increasing …

Pdxscholar Annual Report 2025, Julia Stone, Bertrand Robinson, Stacey Schlatter, Carolee Harrison

Library Faculty and Staff Publications and Presentations

This PDXScholar Annual Report covers the period between January 1, 2025, and December 31, 2025. This report demonstrates PDXScholar’s continued impact through readership data, new and growing collections, and comments and feedback from our users.

Properties Of The Graph Modularity Matrix And Its Applications, Benjamin Quiring, Panayot S. Vassilevski

Mathematics and Statistics Faculty Publications and Presentations

We study the popular modularity matrix and respective functional ([20]) used in connection with graph clustering and derive some properties useful when performing vertex aggregation of the associated graph. These properties are employed in the derivation of a multilevel parallel pairwise aggregation algorithm. Comparative performance results of the studied algorithm applied to graph clustering tested against the popular Louvain algorithm [4], [3] are presented. Some illustrative examples show that the resulting aggregates if used in an adaptive algebraic multigrid (AMG) are able to follow strong direction of anisotropy in finite element problems. 1.

Analysis Of Novel Cannabis Products Labeled As Containing Thc-Jd, Kaelas R. Munger, Carlton C. B. Bone, Killian M. Anreise, Robert M. Strongin

Chemistry Faculty Publications and Presentations

Objective:

THC-JD (tetrahydrocannabioctyl) is a semi-synthetic cannabinoid with an eight-carbon C3 side chain, present in only trace amounts in hemp, requiring synthesis for commercial use. It has been promoted as potentially 19 times more potent than delta-9-THC, consistent with enhanced CB1 receptor affinities for cannabinoids with 7-8 carbon C3 side chains. While one peer-reviewed report identified THC-JD (tetrahydrocannabioctyl) in Japanese online products, an anecdotal report from the U.S. suggests mislabeling. Method: To inform regulatory efforts and consumer awareness and to address these discrepancies, this study chemically analyzed five U.S. commercial cannabis vape products marketed as containing THC-JD. Results: Utilizing GC-MS …

Effectiveness Of Peace Education And Recommendations For Implementation In The Sultanate Of Oman's School Curriculum, Vision 2040, Mohamed Al Braiki

Dissertations and Theses

This study explores peace education as an institutional process within the Sultanate of Oman's K–12 education system. Currently, Oman Vision 2040 articulates commitments to social cohesion, global citizenship, and holistic development. Existing empirical research indicates constant challenges related to bullying, student well-being, emotional distress, and school-related harm. This study conceptualizes peace education as a structural and relational mechanism embedded within institutional routines, leadership practices, and conflict-management responses. Using a qualitative integrative review design, the study examines peer-reviewed research, policy documents, and institutional analyses relevant to Oman, the Gulf region, and broader peace education scholarship. The analysis is guided by theoretical …