Digital Commons Network^™

Toward A Didactical Phenomenology For The Completeness Axiom, Sean Larsen, Tenchita Alzaga Elizondo, Kristen Vroom, Stephen Strand Ii

Mathematics and Statistics Faculty Publications and Presentations

The study is part of an instructional design project focused on introductory real analysis. The goal of the project is to develop a theoretically grounded and empirically supported instructional approach that builds on students’ experiences in the calculus sequence to engage them in the reinvention of the rigorous foundations of the calculus. An essential aspect of this foundation is the completeness of the real numbers. Drawing on the didactical phenomenology heuristic from the theory of Realistic Mathematics Education (RME), we conducted an iterative instructional design study focused on the completeness axiom. The work proceeded in two phases. First, we conducted …

Agnostic Tomography Of Stabilizer Product States, Sabee Grewal, Vishnu Iyer, William Kretschmer, Daniel Liang

Computer Science Faculty Publications and Presentations

We define a quantum learning task called agnostic tomography, where given copies of an arbitrary state ρ and a class of quantum states C, the goal is to output a succinct description of a state that approximates ρ at least as well as any state in C (up to some small error ε). This task generalizes ordinary quantum tomography of states in C and is more challenging because the learning algorithm must be robust to perturbations of ρ. We give an efficient agnostic tomography algorithm for the class C of n-qubit stabilizer product states. Assuming ρ has fidelity at least …

Reasoning In Large Language Models Across Multilingual, Long-Context, And Symbolic Settings, Sina Bagheri Nezhad

Dissertations and Theses

Large Language Models (LLMs) are increasingly deployed as general-purpose reasoners, yet their reliability degrades in three settings that frequently arise in practice: multilingual inputs, long contexts, and symbolic or formally constrained domains. In multilingual settings, uneven training coverage produces substantial performance disparities and uncertain generalization to languages with little or negligible pretraining exposure. In long-context settings, relevant evidence may be sparsely distributed, and models exhibit the "lost-in-the-middle" phenomenon, undermining retrieval and multi-step synthesis. In symbolic settings such as mathematics, small arithmetic or logical slips invalidate solutions, and prose rationales are difficult to verify automatically.

This dissertation first characterizes these failure …

Nonstationary Flood Frequency Analysis For Urban Watersheds Using Open-Source Bayesian Software: Contrasting Case Studies From Texas, C. Haden Smith, Brian Skahill, David A. Margo

Mathematics and Statistics Faculty Publications and Presentations

Urban flood frequency analysis faces unique challenges as land development alters watershed hydrology, producing nonstationary flood records. This study demonstrates nonstationary flood frequency analysis (NSFFA) using RMC-BestFit, an open-source Bayesian software, through two Texas case studies. Brays Bayou at Houston (96 years of record) exemplifies an urbanized watershed with increasing flood trends; a step-logistic model captures both the abrupt increase in mean flood magnitude around 1968 and the progressive decrease in log-space variance as urbanization homogenized runoff response. O.C. Fisher Reservoir (169 years of record) exhibits decreasing trends attributed to brush encroachment and groundwater extraction; despite a sinusoidal model achieving …

Designing Novel Bisquinoline Antimalarials From Historical 4-Aminoquinolines To Combat Drug-Resistant Malaria, Mason J. Handford, Yuexin Li, Terry Riscoe, Xiaowei Zhang, Jane X. Kelly, Michael K. Riscoe

Chemistry Faculty Publications and Presentations

Plasmodium falciparum, the deadliest causative agent of malaria, continues to evade eradication efforts through widespread drug resistance. The recent development of ADC-028, a 4-aminoquinoline antimalarial with excellent activity and pharmacokinetic properties, prompted the investigation of bisquinoline analogs featuring similar structural motifs. Here, we describe a structure-activity relationship study that guided the optimization of compounds with key features, including the 4-anilinoquinoline core and diverse bridging linkers. Several analogs exhibited potent in vitro activity (IC50 < 20 nM) against both drug-sensitive and multidrug-resistant P. falciparum strains, while maintaining favorable cytotoxicity profiles. Among them, 25 demonstrated improved intrinsic metabolic stability (t1/2 = 121 min) and potent in vivo efficacy (ED50 = 0.32 mg/kg/day), achieving complete curative protection at a reduced dose compared to ADC-028. While 25 showed moderately reduced oral bioavailability (F = 43%) and a shorter half-life (T1/2 = 27.2 h) relative to ADC-028, its enhanced in vivo efficacy underscores its therapeutic potential. This work highlights a promising path forward in developing antimalarials that retain the efficacy of legacy compounds while overcoming modern resistance mechanisms.

Building Connections With Graduate Students Through Credit-Bearing Instruction, Michelle Desilets, Kimberly Pendell

Library Faculty and Staff Publications and Presentations

Graduate students often need support with research skills and other professional development that is under-recognized by their programs. Librarians play a key role in helping students fill in these gaps. This case study reviews student feedback on a librarian-developed and -delivered credit-bearing course. The course, Library Research and Scholarly Communication Fundamentals, is offered to graduate students across all disciplines. The curriculum is flexible and applicable to each student’s research, covering topics such as researching literature, citation and data management, and publishing in scholarly journals. The course has generated positive and constructive feedback from students, encompassing themes of self-efficacy, improved research …

How Agile Became The Design Philosophy Of Ai Fishbowl Under Real-World Constraints, Jad Saad

University Honors Theses

This capstone review examines the development of AI Fishbowl, a public-facing, interactive artificial intelligence system, as a case study in how Agile methods evolve from a project management tool into a design philosophy under real-world constraints. Although the project adopted an Agile workflow early on through a Kanban-style task management approach, the initial system design and architecture were still shaped by a largely plan-first mindset. This created a mismatch between flexible process and rigid design assumptions, which became increasingly apparent as the team moved from high-level architecture into implementation.

A critical turning point occurred when early architectural plans proved difficult …

A Cryptographic Perspective On The Verifiability Of Quantum Advantage, Nai-Hui Chia, Honghao Fu, Fang Song, Penghui Yao

Computer Science Faculty Publications and Presentations

In recent years, achieving verifiable quantum advantage on a NISQ device has emerged as an important open problem in quantum information. The sampling-based quantum advantages are not known to have efficient verification methods. This article investigates the verification of quantum advantage from a cryptographic perspective. We establish a strong connection between the verifiability of quantum advantage and cryptographic and complexity primitives, including efficiently samplable, statistically far but computationally indistinguishable pairs of (mixed) quantum states (EFI), pseudorandom states (PRS), and variants of minimum circuit size problems (MCSP). Specifically, we prove that a) a sampling-based quantum advantage is either verifiable or can …

Math, And You! Math Tools Website For First-Grade Children With Instruction Provided Through Music Education, Tye Raymond

University Honors Theses

This thesis explores the conceptualization, exploration, and execution of a User Interface (UI) Design created as a supplemental mathematics education tool for grade one learners. Titled "Note Builder", this thesis project is a web design project, functioning as the prototype for a prospective website. Coding a website is a separate project; this project is comprised of the web design blueprint known as a prototype. The site uses a music-based digital reward system, which I constructed to motivate students as they explore new mathematics skills. All of the math questions used in this web design project are directly produced based on …

Bl(U)E Crab: Bluetooth Low Energy Connection Risk Assessment Benchmarking, Dylan Christopher Conklin

Dissertations and Theses

The usage of Bluetooth Low Energy (BLE)-based tracker devices for stalking has become a salient privacy concern. Detecting unwanted or suspicious trackers is challenging due to their cross-platform compatibility issues, inconsistent detection methods, and lack of an industry-wide standard for detecting malicious devices. BL(u)E CRAB, Bluetooth Low Energy Connection Risk Assessment Benchmarking, scans data and generates risk factors about nearby devices to classify them as suspicious or not. These risk factors include the number of encounters the user had with a device, the duration of time a device has been near the user, the distance a device has traveled …

Reliable Eigenspace Error Estimation Using Source Error Estimators, Jay Gopalakrishnan, Gabriel Pinochet-Soto

Mathematics and Statistics Faculty Publications and Presentations

We introduce a framework for repurposing error estimators for source problems to compute an estimator for the gap between eigenspaces and their discretizations. Of interest are eigenspaces of finite clusters of eigenvalues of unbounded nonselfadjoint linear operators with compact resolvent. Eigenspaces and eigenvalues of rational functions of such operators are studied as a first step. Under an assumption of convergence of resolvent approximations in the operator norm and an assumption on global reliability of source problem error estimators, we show that the gap in eigenspace approximations can be bounded by a globally reliable and computable error estimator. Also included are …

Adolescent Math Anxiety: Teachers' Grouping Approach At The Intersection Of Multiple Student Identities, Dara Shifrer, Hannah Sean Ellefritz, David Hernandez-Saca, Allison Roda, Karla Santana Martinez

Sociology Faculty Publications and Presentations

Math anxiety represents a substantial barrier to many students’ math learning. In this paper, we apply interdisciplinary perspectives to data on over 13,200 ninth graders and their math teachers from the High School Longitudinal Study. Results suggest that being perceived as dis/abled relates to heightened math anxiety regardless of adolescents’ gender, or race and ethnicity. Our intersectional approach reveals that adolescents’ expressions of math anxiety do not always correspond with gender, racial, and ethnic stereotypes, with Black girls, Black boys, and Latine boys expressing relatively low levels of math anxiety. Finally, consistent with the principles of inclusion and universal design, …

Nonenzymatic Glucose Biosensor Based On Selective Reduction Of Silver Ions, Maryam Sarlak, Shankar B. Rananavare

Chemistry Faculty Publications and Presentations

A nonenzymatic conductivity-based glucose biosensor, reported here, designed for potential noninvasive measurement in accessible biofluids such as saliva, sweat, and tears. The sensor exploits a classic Tollens’ silvering process that deposits metallic silver on a sensitized surface via a quantitative, selective reduction of silver ions by glucose. Of the two surface sensitization methods used, the self-assembled bifunctional thiol/silane surfactant yields a more stable and sensitive sensor than tin(II) chloride. The conductometric sensor consists of two spiral interdigitated silver electrodes fabricated by lithography and wet etching. The sensor impedance changes after selective metallic silver deposition between the electrodes. The sensor exhibits …

Chemical Control Strategies For Poa Annua In Managed Turfgrass Systems, James D. Mccurdy, Rebecca G. Bowling, Aaron J. Patton, Edicarlos B. De Castro, James T. Brosnan, David E. Ervin, Shawn D. Askew, Clebson G. Goncalves, Matthew T. Elmore, J. Scott Mcelroy, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

Poa annua L. is a widespread and persistent weed in managed turfgrass systems, exhibiting both annual and short-lived perennial growth habits. Effective management requires an integrated approach, with chemical herbicides remaining a primary tool. This review outlines the current landscape of chemical control strategies, including pre-emergence and post-emergence herbicide options, plant growth regulators, and emerging chemistries. Herbicide resistance in Poa annua continues to pose a significant challenge, with confirmed cases spanning multiple modes of action. Consequently, sustainable management depends on rotating herbicide classes, using mixtures and sequences of treatments, and integrating nonchemical tactics.

Selective Reversal Of Cu-Amyloid Aggregation Monitored In Real Time By Fluorescence Anisotropy: Ni-Bme-Dach Vs Edta Benchmarks, Alyssa N. Schroeder, Eleanor K. Adams, Dane C. Frost, Erica Lopez, Jennie R. Giacomini, Marilyn R. Mackiewicz

Chemistry Faculty Publications and Presentations

Metal dyshomeostasis, particularly involving Cu2+, is increasingly recognized as a key contributor to amyloid-β (Aβ) aggregation and neurotoxicity in Alzheimer’s disease, motivating the development of chelators capable of selectively disrupting pathogenic metal-Aβ interactions without perturbing essential biological metals. Here, we employ steady-state fluorescence anisotropy as a real-time probe of TAMRA-Aβ1–42 rotational mobility to quantify metal-induced aggregation and its reversibility by two chelators with distinct selectivities: EDTA, a broad-spectrum benchmark, and Ni-bme-dach, a sulfur-rich metallodithiolate with high Cu affinity. Cu2+ induces the most significant increases in anisotropy, consistent with rapid formation of large nanoscale aggregates, while Fe3+ produces moderate aggregation and …

Clustering Of Temporal And Visual Data: Recent Advancements, Priyanka Mudgal

Computer Science Faculty Publications and Presentations

Clustering plays a central role in uncovering latent structure within both temporal and visual data. It enables critical insights in various domains including healthcare, finance, surveillance, autonomous systems, and many more. With the growing volume and complexity of time-series and image-based datasets, there is an increasing demand for robust, flexible, and scalable clustering algorithms. Although these modalities differ—time-series being inherently sequential and vision data being spatial—they exhibit common challenges such as high dimensionality, noise, variability in alignment and scale, and the need for interpretable groupings. This survey presents a comprehensive review of recent advancements in clustering methods that are adaptable …

The Gut Microbiota Shapes The Human And Murine Breath Volatilome, Ariel J. Hernandez-Leyva, Amalia Z. Berna, Maggie H. Bui, Yang Liu, Anne L. Rosen, Michael A. Lint, Samantha A. Whiteside, Natalia Jaeger, Nikhilesh Joardar, Wentai Luo, Multiple Additional Authors

Chemistry Faculty Publications and Presentations

The gut microbiota is crucial to health, yet implementation of microbiota-based therapeutics is limited by the lack of rapid diagnostics. We hypothesize that breath contains gut microbe-derived volatile organic compounds (VOCs) reflecting microbiota composition and metabolism. In healthy children, we found that breath VOC composition (or volatilome), assessed by gas chromatography-mass spectrometry, correlates with gut microbiome composition and function. By capturing exhaled breath from human-stool-colonized and monocolonized gnotobiotic mice, we profiled breath VOCs and discovered that murine breath is also significantly influenced by the gut microbiome. VOCs from cultured gut microbes were identified in vivo in monocolonized gnotobiotic colonized mice. …

Ureilite Meteorite Petrofabrics: Evolution And Formation Deformational Conditions, Benjamin Botwe Agyemang

Dissertations and Theses

This thesis examines the origin and development of crystallographic fabrics in ureilites, which are primitive achondritic meteorites interpreted as residues of partial melting from a differentiated parent body. In this study, we evaluate three fabric-forming mechanisms: gravitational cumulate crystallization, shock-induced deformation, and flow alignment associated with melt extraction and convective stirring. A quantitative Electron Backscatter Diffraction (EBSD) analysis was conducted on six ureilitic meteorites to assess olivine Lattice Preferred Orientation (LPO), Shape Preferred Orientation (SPO), the connection between SPO and LPO, and other deformation metrics, including Grain Orientation Spread (GOS), and Crystal Rotation Axis (CRA). Our results suggest that most …

Microbial Communities And Biogeochemistry Of A Melting Rocky Mountain Glacier, Pacifica Sommers, Elizabeth Traver, Alison Orthel, Andrew G. Fountain, Jacki Klancher, Steven K. Schmidt

Geology Faculty Publications and Presentations

Mountain glaciers are disappearing rapidly, and with their disappearance, we may be losing unstudied biodiversity and genetic resources. A variety of habitats for microorganisms exist on glaciers, especially within pockets of supraglacial sediments (cryoconite) that support high levels of biological activity and diversity. We used biogeochemical approaches, high-throughput DNA sequencing, and microscopy to describe the biogeochemistry and microbial communities of supraglacial sediments on the Dinwoody Glacier in the Wind River Range, Wyoming. Carbon (C) and nitrogen (N) concentrations were high, and C:N ratios were close to the Redfield ratio indicating active nutrient cycling. We found unique microbial communities in sediments …

Wild@Fire2025: Overview Of Word-Level Code-Mixed Language Identification In Dravidian Languages, Ameeta Agrawal, Asha Hegde, Sharal Coelho, Sabur Butt, Fazlourrahman Balouchzahi, Sudha V, Shashirekha Hosahalli Lakshmaiah

Computer Science Faculty Publications and Presentations

Code-mixing is considered as a linguistic phenomenon that combines several languages into one text. It has now become very common in multilingual societies, especially in digital communication. Word-Level Identification of Languages in Dravidian Languages (WILD) - a Code-mixed Language Identification (CoLI) in Dravidian languages shared task, organized as a part of Forum for Information Retrieval and Evaluation (FIRE) 2025, put forward these challenges to the researchers by asking them to develop models capable of classifying words in code-mixed texts involving Dravidian languages - Tamil, Telugu, Malayalam, Kannada, and Tulu, which are interwoven with English. It poses significant challenges due to …

Research Progress On Generating Perfect Vortex Beams Based On Metasurfaces, Xiujuan Liu, Manna Gu, Ying Tian, Mingfeng Zheng, Bo Fang, Zhi Hong, Chee Leong Tan, Xufeng Jing

Electrical and Computer Engineering Faculty Publications and Presentations

This article reviews the latest advances in the generation and control of perfect vector beams using metasurfaces. In recent years, metasurfaces have garnered increasing interest due to their simple fabrication and easy integration. Perfect vortex beams (PVBs), as a type of vector beams, exhibit complex polarization states that require the superposition of multiple phases for their generation. The use of metasurfaces provides a compact platform for the generation of perfect vortex beams and enables more complex vortex beam control tasks, which are quite challenging for traditional optics. This paper begins by introducing the principle of perfect vortex beam generation using …

Cognitive And Economic Development, John Luke Gallup

Economics Faculty Publications and Presentations

A burgeoning literature has found that early childhood health conditions of individuals have large causal effects on their cognitive development, education and earnings. How much does early cognitive development contribute to the national economy? Although researchers have long studied the role of worker health for economic growth, they have not assessed the role of early cognitive development.

Cognitive ability is the foundation of human capital, affecting both educational attainment and economic growth. The risk factors for poor cognitive development are very high in many countries. Each risk factor also causes child mortality, making child survival a viable proxy for good …

Solving The Middle School Math Problem To Increase Achievement, Andre Goodlow

Educational Leadership Professional Doctorate Dissertations

This study used improvement science to address persistent and disproportionate low mathematics achievement among middle school students, particularly Black/African American and Hispanic students, in an urban school district in the Pacific Northwest. Local data indicated significant deficiencies in math proficiency, with the target district exhibiting achievement disparities exceeding state averages. The project investigated root causes of low math achievement, prioritizing the enhancement of foundational math skills and the implementation of evidence-based interventions. The improvement theory centered on deploying an evidence-based core math curriculum and intervention program for incoming middle school students, tested through cycles during a four-week summer school program. …

Using Maximum Entropy (Maxent) Tool In Arcgis Pro For Species Distribution Modelling Of Pseudoscorpions In The Pacific Northwest, Elliot Toshihiro Cochran

Masters in GIS Practicum Reports

The use of Geographic Information Systems (GIS) to create Species Distribution Models (SDMs) is rising among many scientific disciplines. Many professionals who were not originally focused on GIS are increasingly becoming more invested in this technology. SDMs are widely used to estimate species’ potential geographic distributions and to evaluate the environmental factors that constrain their ranges. The presence-only maximum entropy (MaxEnt) algorithm implemented in the MaxEnt tool in ArcGIS Pro was used in this project to model habitat suitability for two species of pseudoscorpions, M. pacificus and an undescribed species, in Oregon and Washington. Presence points (of specimen sample locations) …

Machine Learning For Economists, John Luke Gallup

Economics Faculty Publications and Presentations

Explication of machine learning algorithms and their usefulness for economic research. The prediction algorithms of Random Forest, Gradient Boost Machines, Neural Networks and Support Vector Machines are built from simple steps applied at large scale to generate surprisingly precise nonlinear estimates. Although useful for processing and interpreting new forms of data, their application to economics research is limited because they do not provide readily interpretable evidence of the causes of outcomes.

Data And Code For: Combined Effects Of Forest Fire And Climate Warming On Seasonal Snow In The Western Oregon Cascades, Joseph D. Vigil

Environmental Science and Management Datasets

This dataset supports a study examining the combined effects of forest fire and climate warming on seasonal snow in the Breitenbush watershed of the western Oregon Cascades. The archive includes daily SnowModel snow water equivalent outputs for forested, current post-fire, mid-century, and end-century climate scenarios; field meteorological and manual snow observations; station metadata; modified SnowModel code used to represent post-fire snow-albedo decay; and R code used to calculate snow metrics and statistical comparisons reported in the associated manuscript. Derived results and documentation are included to support reproduction of the primary analyses.

An Introduction To Field Excursions For The 2026 Geological Society Of America Cordilleran Section Meeting In Loreto, Baja California Sur, México, Scott E.K. Bennett, Michael H. Darin, Genaro Martínez Gutiérrez

Geology Faculty Publications and Presentations

The 122nd annual meeting of the Geological Society of America (GSA) Cordilleran Section will be held in Loreto, Baja California Sur, México, an idyllic and historic Sonoran Desert city nestled on the eastern shore of the Baja California peninsula. The 2026 Loreto meeting marks a milestone for GSA as it is the first time in the Section’s century-plus history that the meeting has been held on the Baja California peninsula and only the third time that the meeting has been held in México. Thus, the 2026 Loreto meeting and related field trips represent a meaningful expansion of the Section’s engagement …

Scalar Source Localization Using Multi-Sensor Domains Of Dependence In Turbulent Channel Fow, Zejian You, Xiaowei Zhu, Qi Wang

Mechanical and Materials Engineering Faculty Publications and Presentations

Tracking hazardous events such as wildfire smoke, coastal oil spills, or chemical releases in natural environments is complicated by turbulent dispersion and molecular diffusion. This study presents a method to localize pollutant sources rapidly and accurately using infinite time-averaged measurements from a multi-sensor network, leveraging the duality between mean forward and adjoint scalar fields. The forward-adjoint duality states that measurements at the sensor (forward feld) are equal to the adjoint field at the source, providing crucial spatial information about the source. Consequently, the adjoint scalar fields can be interpreted as the domain of dependence for the sensor observations [1, 2]. …

Aquatic Invasive Species Survey And Treatment On Lake Umatilla And Lake Celilo 2024-2025 Report, Jacob Rose, Gabriel E. Campbell

Center for Lakes and Reservoirs Publications and Presentations

Flowering Rush (Butomus umbellatus) is an invasive aquatic plant in the Pacific Northwest that threatens salmon habitat. The Center for Lakes and Reservoirs staff surveyed for this and other aquatic species from 2024 and 2025 in the Columbia River in Lake Umatilla and Lake Celilo. This document summarizes their survey efforts including their protocols, data, and small-scale removal efforts.

Heat Misers, Snow Misers, And Cognitive Misers: The 'Nukewarm' Perceptions Of Nuclear Power, Tyler Williams

Dissertations and Theses

Rising energy demand in the United States necessitates alternatives to fossil fuels, yet renewable energy sources alone are insufficient to meet this demand. Nuclear power presents a promising option but faces persistent public hesitancy. This study examines how heuristic-based biases relate to American's risk-benefit perceptions towards nuclear power. Guided by the heuristic-systematic model. Results indicate that competence and affect are related to risk-benefit perceptions, and naturalness shows no relationship with risk perceptions but does correlate with benefit perceptions. Implications highlight the importance of affect-driven communication strategies for nuclear communicators, while also underscoring the need for participatory approaches that foster trust …