Digital Commons Network^™

The Characterization Of Trna Modifying Enzymes S-Adenosylmethionine : Trna Ribosyltransferase-Isomerase (Quea) And A Novel Type I Gtp Cyclohydrolase, Shilah Amal Bonnett

Dissertations and Theses

Queuosine is a hypermodified nucleoside located in the wobble position of bacterial and eukaryotic tRNAs coding for Asp, Tyr, His and Asn. The biosynthesis involves the participation of S-adenosyl-methionine:tRNA ribosyltransferase-isomerase (QueA) and a GTP Cyclohydrolase-I. QueA catalyzes the transfer and isomerization of the ribosyl moiety from AdoMet to preQ1 modified tRNA. Substrate analogs of AdoMet were used to elucidate important substrate-enzyme interactions and to test key steps in the proposed chemical mechanism. Replacing AdoMet with SeAdoMet had little effect upon substrate binding but exhibited 30-fold reduction in kcat, consistent with deprotonation at C-5' as the first catalytic step. 7-deazaAdoMet failed …

Pend Oreille River Model: Model Scenario Simulations, Robert Leslie Annear, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near the historical Lake Pend Oreille outlet and Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) as shown in Figure 1.

This management scenario report is an update of a prior report. The management scenarios had to be rerun because of a modeling error made with the outflows rate of Albeni Falls Dam. The new calibration error statistics were compared with the old statistics in Appendix B: Model Calibration …

A Comparison Of Five Models For Estimating Clear-Sky Solar Radiation, Robert Leslie Annear, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

Many agencies in the USA are developing management approaches to address water quality concerns and threatened and endangered species habitat requirements in water bodies. Many of these water bodies are water quality limited for temperature. Factors influencing stream temperature include: streamside vegetation, topographic shading, inflows and outflows, stream width, stream depth, light extinction and solar radiation. One of the key driving factors in estimating a water body heat budget is calculating the amount of solar radiation incident on the water surface. Even though it is preferable to measure clear-sky solar radiation, many temperature models rely on theoretical estimates of clear-sky …

Raps Sheet, October 2007, Retirement Association Of Portland State

RAPS Sheet: Monthly Newsletter

No abstract provided.

Effects Of Human Choices On Characteristics Of Urban Ecosystems, Lawrence A. Baker, Anthony J. Brazel, Loren Bryne, Alex Felson, Morgan Grove, Kristina Hill, Kristen C. Nelson, Jason Walker, Vivek Shandas

Institute for Sustainable Solutions Publications and Presentations

Most urban ecology in cities remains an "ecology in cities" rather than an "ecology of cities." Accomplishing the latter requires the inclusion of humans within the concept of "ecosystem," both how humans alter the properties of urban ecosystems and how these alterations in turn influence human well-being. These influences are both direct (e.g., physiological and psychological influences on the human organism) and indirect, by influencing ecosystem sustainability. For the 2007 ESA meeting, Larry Baker, Loren Byrne, Jason Walker, and Alex Felson organized a symposium to address the relationships among human choices and urban ecosystems. In the introductory talk of this …

Faculty Senate Monthly Packet October 2007, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The October 2007 Monthly packet includes the October agenda and appendices and the Faculty Senate minutes and attachments from the meeting held June 2007

The Urban Heat Island Mitigation Impact Screening Tool (Mist), David J. Sailor, Nikolaas Dietsch

Mechanical and Materials Engineering Faculty Publications and Presentations

A web-based software tool has been developed to assist urban planners and air quality management officials in assessing the potential of urban heat island mitigation strategies to affect the urban climate, air quality, and energy consumption within their cities. The user of the tool can select from over 170 US cities for which to conduct the analysis, and can specify city-wide changes in surface reflectivity and/or vegetative cover. The Mitigation Impact Screening Tool (MIST) then extrapolates results from a suite of simulations for 20 cities to estimate air temperature changes associated with the specified changes in surface characteristics for the …

Environmental Controls On The Landscape-Scale Biogeography Of Stream Bacterial Communities, Noah Fierer, Jennifer L. Morse, Sean T. Berthrong, Emily S. Bernhardt, Robert B. Jackson

Environmental Science and Management Faculty Publications and Presentations

We determined the biogeographical distributions of stream bacteria and the biogeochemical factors that best explained heterogeneity for 23 locations within the Hubbard Brook watershed, a 3000-ha forested watershed in New Hampshire, USA. Our goal was to assess the factor, or set of factors, responsible for generating the biogeographical patterns exhibited by microorganisms at the landscape scale. We used DNA fingerprinting to characterize bacteria inhabiting fine benthic organic matter (FBOM) because of their important influence on stream nutrient dynamics. Across the watershed, streams of similar pH had similar FBOM bacterial communities. Streamwater pH was the single variable most strongly correlated with …

Piloting A Program-Level Learning Assessment Plan In Plant And Soil Science, Teresa Cerny-Koenig, Catherine A. Perillo, Caroline Pearson-Mims, Kathleen M. Williams, Gary R. Brown, Andrew Morozov, William L. Pan, William E. Hendrix

Office of Academic Innovation Publications

Faculty of Washington State University's undergraduate degree programs in Crop Science, Soil Science, and Horticulture initiated the development and implementation of an assessment process to gauge the extent to which WSU students in the plant and soil science programs meet university and program learning goals. This process was undertaken primarily to help improve our joint teaching efforts and students' learning; it also was encouraged by the needed documentation for the 2007 university accreditation and a need to better match our program learning goals with the University's newly developed Learning Goals of the Baccalaureate. The new program-level assessment plan focused on …

Self-Assembled Biomimetic Antireflection Coatings, Nicholas C. Linn, Chih-Hung Sun, Peng Jiang, Bin Jiang

Mathematics and Statistics Faculty Publications and Presentations

The authors report a simple self-assembly technique for fabricating antireflection coatings that mimic antireflective moth eyes. Wafer-scale, nonclose-packed colloidal crystals with remarkable large hexagonal domains are created by a spin-coating technology. The resulting polymer-embedded colloidal crystals exhibit highly ordered surface modulation and can be used directly as templates to cast poly(dimethylsiloxane) (PDMS) molds. Moth-eye antireflection coatings with adjustable reflectivity can then be molded against the PDMS master. The specular reflection of replicated nipple arrays matches the theoretical prediction using a thin-film multilayer model. These biomimetic films may find important technological application in optical coatings and solar cells.

Interview With Anthony Boutard, Ayers Creek Farm, 2007 (Audio), Anthony Boutard

All Sustainability History Project Oral Histories

Interview of Anthony Boutard by Magda Gaytan at Ayers Creek Farm on August 10th, 2007.

The interview index is available for download.

Interview With Dan J. Wilson, Sudan Farms, 2007 (Audio), Dan J. Wilson

All Sustainability History Project Oral Histories

Interview of Dan J. Wilson by Jason Keaton at Canby, Oregon on August 10th, 2007.

The interview index is available for download.

Interview With Trevor Baird, Baird Family Orchard, 2007 (Audio), Trevor Baird

All Sustainability History Project Oral Histories

Interview of Trevor Baird by Adam Hopfe at Portland State University on August 7th, 2007.

The interview index is available for download.

Interview With Melissa & Rod Volbeda, Willamette Valley Cheese, 2007 (Audio), Melissa Volbeda, Rod Volbeda

All Sustainability History Project Oral Histories

Interview of Melissa and Rod Volbeda by Magda Gaytan on August 6th, 2007.

Willamette Valley Cheese Company tour photos available for download.

Food Security And Hunger Among Low Income Us Households: Relations To Federal Food Assistance Program Participation, Rebecca Elizabeth Sanders

Dissertations and Theses

This dissertation describes the conceptual and empirical framework that guides the definition of food insecurity and hunger, the present status of federal programmatic responses, and the status of current research on the topic. It also examines relations between hunger and federal food assistance program participation. Logistic regression is utilized to build two predictor models. Model 1 predicts federal food assistance program participation from household structure, income, community characteristics, and demographics. Model 2 predicts food insecurity/hunger from household structure, income, community characteristics, demographics, and federal food assistance program participation. Results are based on 2004 Current Population Survey data from low income …

Chemomechanical Polymers As Sensors And Actuators For Biological And Medicinal Applications, Hans-Jörg Schneider, Kazuaki Kato, Robert M. Strongin

Chemistry Faculty Publications and Presentations

Changes in the chemical environment can trigger large motions in chemomechanical polymers. The unique feature of such intelligent materials, mostly in the form of hydrogels, is therefore, that they serve as sensors and actuators at the same time, and do not require any measuring devices, transducers or power supplies. Until recently the most often used of these materials responded to changes in pH. Chemists are now increasingly using supramolecular recognition sites in materials, which are covalently bound to the polymer backbone. This allows one to use a nearly unlimited variety of guest (or effector) compounds in the environment for a …

Pricing In Dynamic Vehicle Routing Problems, Miguel Andres Figliozzi, Hani S. Mahmassani, Patrick Jaillet

Civil and Environmental Engineering Faculty Publications and Presentations

The principal focus of this paper is to study carrier pricing decisions for a type of vehicle routing problems defined in a competitive and dynamic environment. This paper introduces the vehicle routing problem in a competitive environment (VRPCE) as an extension of the traveling-salesman problem with profits (TSPP) to a dynamic competitive auction environment. In the VRPCE, the carrier must estimate the incremental cost of servicing new service requests as they arrive dynamically. The paper presents a rigorous and precise treatment of the sequential pricing and costing problem that a carrier faces in such an environment. The sequential pricing problem …

A Decision Support Model For Project Manager Assignments, Peerasit Patanakul, Dragan Milošević, Timothy R. Anderson

Engineering and Technology Management Faculty Publications and Presentations

The question, "How to assign projects to project managers?" is considered to be one of the most important questions in project management. Nevertheless, methods to answer this question have not yet been sufficiently addressed in the literature. In practice, even though the question is rather common, practitioners still seek an effective project assignment methodology - especially, for the assignments of project managers of multiple concurrent projects, such as a project manager of new product development projects in typical high-technology industries. To respond to this question, we performed an inductive study to develop a theoretical framework for project assignments, including some …

Interview With Dianne Stefani-Ruff, Portland Farmers Market, 2007 (Audio), Dianne Stefani-Ruff

All Sustainability History Project Oral Histories

Interview of Dianne Stefani-Ruff by Jennifer Bennett on July 31st, 2007.

The interview index is available for download.

Interview With Roger Allen Konka, Springwater Farm, 2007 (Audio), Roger Allen Konka

All Sustainability History Project Oral Histories

Interview of Roger Allen Konka by Michael Schott on July 29th, 2007.

The interview index is available for download.

Interview With Lyle N. Stanley, Gee Creek Farm, 2007 (Audio), Lyle N. Stanley

All Sustainability History Project Oral Histories

Interview of Lyle N. Stanley by Aaron Veal at Portland State University on July 28th, 2007.

The interview index is available for download.

Interview With Kathy & Matt Unger, Unger Farms, 2007 (Audio), Kathy Unger, Matt Unger

All Sustainability History Project Oral Histories

Interview of Kathy and Matt Unger by Alix Lefler at Cornelius, Oregon on July 25th, 2007.

The interview index is available for download.

Biosedimentology Of Thermal Features In The Uzon Caldera, Kamchatka, Russia : Implications For Biosignature Formation, Jessica Christine Goin

Dissertations and Theses

Modern hot springs serve as a habitat for microorganisms similar in metabolism, morphology, and cellular structure to the microbes that existed relatively early in Earth history. To maximize our ability to interpret evidence for these microorganisms and their communities in the rock record, we need to understand how their biosignatures form and become preserved.

This biosedimentological study of four thermal features in the Uzon Caldera (K4 Well, Ochki Pool, Thermophile Spring, and Zavarzin Pool) focused on identifying how chemical, physical and biological inputs contribute to the characteristics of sinter biofabrics. The biofabrics of K4 Well outflow channel were studied in …

Graduate Teaching Assistants' Statistical Knowledge For Teaching, Jennifer Ann Noll

Dissertations and Theses

This dissertation explores graduate teaching assistants’ (TAs’) statistical knowledge for teaching. Data collection methods that enabled the exploration of TA s’ statistical knowledge for teaching include: (a) a task-based web survey administered to 68 TAs from 18 universities across the United States; and, (b) a series of three taskbased interviews with a subset of five TAs from the larger survey population. Through and Strauss, 1967), I investigated the ways in which TAs reason about sampling tasks, and how they think about teaching and student learning in relation to sampling ideas. Building on past research in statistics education on K-12 and …

Hydrilla Verticillata - An Aquatic Invader!, Vanessa Howard

Center for Lakes and Reservoirs Publications and Presentations

Brochure on hydrilla

Pend Oreille River, Box Canyon Model: Model Scenario Simulations, Chris Berger, Robert Leslie Annear, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Washington Department of Ecology is interested in developing a temperature Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) and Box Canyon Dam as shown in Figure 1. The Pend Oreille drainage basin is shown in Figure 2. An existing model of the Box Canyon reach was updated from CE-QUALW2 Version 3.0 to Version 3.5. This current research involves improving the calibration of the original model (1997 and 1998) and expanding the model using 2004 as an additional data set for calibration.

The use of field …

Green Crab Management: Reduction Of A Marine Invasive Population, Catherine E. De Rivera, Edwin D. Grosholz, Greg Ruiz, Amy A. Larson, Rebecca L. Kordas, Mark Sytsma

Environmental Science and Management Faculty Publications and Presentations

The overall goal of this study is to develop and demonstrate the capacity for local eradication of adult Carcinus maenas, European green crabs. This represents a conceptual shift in development of management options to address established invasions in marine systems, extending and exploring the application of terrestrial successes in this area. Specifically, this project tests the effects of removing green crabs from Bodega Harbor on the green crab population and on native shore crabs eaten by green crabs.

Nature-Inspired Interconnects For Self-Assembled Large-Scale Network-On-Chip Designs, Christof Teuscher

Electrical and Computer Engineering Faculty Publications and Presentations

Future nanoscale electronics built up from an Avogadro number of components need efficient, highly scalable, and robust means of communication in order to be competitive with traditional silicon approaches. In recent years, the networks-on-chip (NoC) paradigm emerged as a promising solution to interconnect challenges in silicon-based electronics. Current NoC architectures are either highly regular or fully customized, both of which represent implausible assumptions for emerging bottom-up self-assembled molecular electronics that are generally assumed to have a high degree of irregularity and imperfection. Here, we pragmatically and experimentally investigate important design tradeoffs and properties of an irregular, abstract, yet physically plausible …

Potentiometric And Relaxometric Properties Of A Gadolinium-Based Mri Contrast Agent For Sensing Tissue Ph, Ferenc K. Kálmán, Mark Woods, Peter Caravan, Paul Jurek, Marga Spiller, Gyula Tircso, Róbert Király, Ernő Brücher, A. Dean Sherry

Chemistry Faculty Publications and Presentations

The pH-sensitive contrast agent, GdDOTA-4AmP (Gd1) has been successfully used to map tissue pH by MRI. Further studies now demonstrate that two distinct chemical forms of the complex can be prepared depending upon the pH at which Gd³⁺ is mixed with ligand 1. The desired pH-sensitive form of this complex, referred to here as a Type II complex, is obtained as the exclusive product only when the complexation reaction is performed above pH 8. At lower pH values, a second complex is formed that, by analogy with an intermediate formed during the preparation of GdDOTA, we tentatively assign …

Perspectives On An Arts Magnet School : The Voices Of Elementary School Children, Denise Robles-Torres

Dissertations and Theses

Since the beginning of public school as a social institution early in the nineteenth century, the voices of children have been missing from the discussion about school. From the progressive era to the current standards based movement, structures of education have been premised on the ideas of what adults think are the best ways for children to learn. But educators and other adults are recognizing the importance of student perspectives by providing children opportunities to participate in critical reflection about school. By including children of all ages in this discussion, educators, policy makers and researchers may begin to examine their …