Digital Commons Network^™

Quantifying Twentieth Century Glacier Change In The Sierra Nevada, California, Hassan J. Basagic

Dissertations and Theses

Numerous small alpine glaciers occupy the high elevation regions of the central and southern Siena Nevada, California. These glaciers change size in response to variations in climate and are therefore important indicators of climate change. An inventory based on USGS topographic maps (l :24,000) revealed 1719 glaciers and perennial snow and ice features for a total area of 39.l5 ±7.52 km². The number of 'true' glaciers, versus non-moving ice, is estimated to be 118, covering 15.87 ± 1.69 Km². All glaciers were located on north to northeast aspects, at elevations >3000 m. Historical photographs, geologic evidence, …

New Particle Formation In The Front Range Of The Colorado Rocky Mountains, Micahel Boy, Thomas Karl, Andrew Turnipseed, Roy Lee Mauldin, Edward Kosciuch, James Greenberg, Jeff Rathbone, James Smith, Andreas Held, Kelley Barsanti, Alex Guenther

Civil and Environmental Engineering Faculty Publications and Presentations

New particle formation is of interest because of its influence on the properties of aerosol population, and due to the possible contribution of newly formed particles to cloud condensation nuclei. Currently no conclusive evidence exists as to the mechanism or mechanisms of nucleation and subsequent particle growth. However, nucleation rates exhibit a clear dependence on ambient sulphuric acid concentrations and particle growth is often attributed to the condensation of organic vapours. A detailed study of new particle formation in the Front Range of the Colorado Rocky Mountains is presented here. Gas and particle measurement data for 32 days was analyzed …

Daily Forecasts Of Columbia River Plume Circulation: A Tale Of Spring/Summer Cruises, Yinglong J. Zhang, Antonio M. Baptista, Barbara M. Hickey, Byron C. Crump, David A. Jay, Michael Wilkin, Charles Seaton

Civil and Environmental Engineering Faculty Publications and Presentations

Semi-operational daily forecasts of circulation from an observatory for the Columbia River estuary-plume-shelf system routinely support oceanographic cruises, by providing 24h-ahead estimates of plume location and structure for planning purposes and for near real-time interpretation of observations. This paper analyzes forecast skill during spring/summer cruises in 2004-2007. Assessment addresses both qualitative descriptions of major plume trends and features and quantitative representation of data from (primarily) vessel-based flow-through, cast and towed systems. Forecasts emerge as robust predictors of plume location and variability, with skill that has grown over time, at least in part due to improvements in model algorithms. When the …

Glacial Ecosystems, Amy Hodson, Alexandre M. Anesio, Martyn Tranter, Andrew G. Fountain, Mark Osborn, John Charles Priscu, Johanna Laybourn-Perry, Birgit Sattler

Geography Faculty Publications and Presentations

There is now compelling evidence that microbially mediated reactions impart a significant effect upon the dynamics, composition, and abundance of nutrients in glacial melt water. Consequently, we must now consider ice masses as ecosystem habitats in their own right and address their diversity, functional potential, and activity as part of alpine and polar environments. Although such research is already underway, its fragmentary nature provides little basis for developing modern concepts of glacier ecology. This paper therefore provides a much-needed framework for development by reviewing the physical, biogeochemical, and microbiological characteristics of microbial habitats that have been identified within glaciers and …

The Ownership Of The Internet And The World Wide Web In Vermont, Ida Kubiszewski

Institute for Sustainable Solutions Publications and Presentations

The internet is an interesting case, since it was created entirely with taxpayer's money by DARPA, while the world wide web was created at CERN in Switzerland and placed into the public domain voluntarily in 1993. The internet and web have many features of a commons, and many people refer to the "internet commons". Kubiszewski (pronounced cube- ih-shefski) explores the intricacies of the internet and world wide web to determine if internet companies are extracting economic rent from the public and how it could be recovered. She finds that companies are making a substantial profit by utilizing a resource that …

Electrical Detection Of The Temperature Induced Melting Transition Of A Dna Hairpin Covalently Attached To Gold Interdigitated Microelectrodes, Greg P. Brewood, Yaswanth Rangineni, Daniel J. Fish, Ashwini Bhandiwad, David R. Evans, Raj Solanki, Albert S. Benight

Chemistry Faculty Publications and Presentations

The temperature induced melting transition of a self-complementary DNA strand covalently attached at the 5' end to the surface of a gold interdigitated microelectrode (GIME) was monitored in a novel, label-free, manner. The structural state of the hairpin was assessed by measuring four different electronic properties of the GIME (capacitance, impedance, dissipation factor and phase angle) as a function of temperature from 25 degrees C to 80 degrees C. Consistent changes in all four electronic properties of the GIME were observed over this temperature range, and attributed to the transition of the attached single-stranded DNA (ssDNA) from an intramolecular, folded …

Synthesis And Characterization Of Novel Chiral Ionic Liquids And Investigation Of Their Enantiomeric Recognition Properties, David K. Bwambok, Hadi M. Marwani, Vivian E. Fernand, Sayo O. Fakayode, Mark Lowry, Ioan Negulescu, Robert M. Strongin, Isiah M. Warner

Chemistry Faculty Publications and Presentations

We report the synthesis and characterization of amino acid ester based chiral ionic liquids, derived from L- and D-alanine tert butyl ester chloride. The synthesis was accomplished via an anion metathesis reaction between commercially available L- and D-alanine tert butyl ester chloride using a variety of counterions such as lithium bis (trifluoromethane) sulfonimide, silver nitrate, silver lactate, and silver tetrafluoroborate. Both enantiomeric forms were obtained as confirmed by bands of opposite sign in the circular dichroism spectra. The L- and D-alanine tert butyl ester bis (trifluoromethane) sulfonimide were obtained as liquids at room temperature and intriguingly exhibited the highest thermal …

Coupling The Hydrodynamic And Water Quality Model Ce-Qual-W2 With A Multi-Trophic Fish Bio-Energetics Model For Lake Roosevelt, Washington, Michael Lee Mckillip

Dissertations and Theses

Grand Coulee Dam created Franklin D. Roosevelt Lake as part of the Columbia Basin Project. Located in northeastern Washington State, the Project provides economically important hydropower (19 billion kilowatt hours per year), irrigation (225,000 ha), flood control, and sport fishing ($5 to 20 million annually). A good system understanding aids in balancing these beneficial uses for the 230 km long reservoir. The reservoir's atypical 45-day mean residence time is much shorter than a typical lake, and much longer than for a riverine dam. The spring freshet requires drawdowns of 15 to 20 m for flood control—the driving characteristic of reservoir …

Refactoring Tools: Fitness For Purpose, Emerson Murphy-Hill, Andrew P. Black

Computer Science Faculty Publications and Presentations

Refactoring tools can improve the speed and accuracy with which we create and maintain software -- but only if they are used. In practice, tools are not used as much as they could be: this seems to be because sometimes they do not align with the refactoring tactic preferred by the majority of programmers, a tactic we call floss refactoring. We propose five principles that characterize successful floss refactoring tools -- principles that can help programmers to choose the most appropriate refactoring tools and also help toolsmiths to design tools that fit the programmer's purpose.

Can Laser Speckle Flowmetry Be Made A Quantitative Tool?, Donald D. Duncan, Sean J. Kirkpatrick

Electrical and Computer Engineering Faculty Publications and Presentations

The ultimate objective of laser speckle flowmetry (and a host of specific implementations such as laser speckle contrast analysis, LASCA or LSCA; laser speckle spatial contrast analysis, LSSCA; laser speckle temporal contrast analysis, LSTCA; etc.) is to infer flow velocity from the observed speckle contrast. Despite numerous demonstrations over the past 25 years of such a qualitative relationship, no convincing quantitative relationship has been proven. One reason is a persistent mathematical error that has been propagated by a host of workers; another is a misconception about the proper autocorrelation function for ordered flow. Still another hindrance has been uncertainty in …

Monte Carlo Modeling Of Spatial Coherence: Free-Space Diffraction, Donald D. Duncan, David G. Fischer, Scott A. Prahl

Electrical and Computer Engineering Faculty Publications and Presentations

We present a Monte Carlo method for propagating partially coherent fields through complex deterministic optical systems. A Gaussian copula is used to synthesize a random source with an arbitrary spatial coherence function. Physical optics and Monte Carlo predictions of the first- and second-order statistics of the field are shown for coherent and partially coherent sources for free-space propagation, imaging using a binary Fresnel zone plate, and propagation through a limiting aperture. Excellent agreement between the physical optics and Monte Carlo predictions is demonstrated in all cases. Convergence criteria are presented for judging the quality of the Monte Carlo predictions.

Chiral Recognition Of Amino Acids By Use Of A Fluorescent Resorcinarene, Gerald I. Richard, Hadi M. Marwani, Shan Jiang, Sayo O. Fakayode, Mark Lowry, Robert M. Strongin, Isiah M. Warner

Chemistry Faculty Publications and Presentations

The spectroscopic properties of a chiral boronic acid based resorcinarene macrocycle employed for chiral analysis were investigated. Specifically, the emission and excitation characteristics of tetraarylboronate resorcinarene macrocycle (TBRM) and its quantum yield were evaluated. The chiral selector TBRM was investigated as a chiral reagent for the enantiomeric discrimination of amino acids using steady-state fluorescence spectroscopy. Chiral recognition of amino acids in the presence of the macrocycle was based on diastereomeric complexes. Results demonstrated that TBRM had better chiral discrimination ability for lysine as compared to the other amino acids. Partial least squares regression modeling (PLS-1) of spectral data for macrocycle-lysine …

Unsymmetric Aryl–Alkyl Disulfide Growth Inhibitors Of Methicillin-Resistant Staphylococcus Aureus And Bacillus Anthracis, Edward Turos, Kevin D. Revell, Praveen Ramaraju, Danielle A. Gergeres, Kerriann Greenhalgh, Ashley Young, Nalini Sathyanarayan, Sonja Dickey, Daniel Lim, Mamoun M. Alhamadsheh, Kevin A. Reynolds

Chemistry Faculty Publications and Presentations

This study describes the antibacterial properties of synthetically-produced mixed aryl alkyl disulfide compounds as a means to control the growth of Staphylococcus aureus and Bacillus anthracis. Some of these compounds exerted strong in vitro bioactivity. Our results indicate that among the twelve different aryl substituents examined, nitrophenyl derivatives provide the strongest antibiotic activities. This may be the result of electronic activation of the arylthio moiety as a leaving group for nucleophilic attack on the disulfide bond. Small alkyl residues on the other sulfur provide the best activity as well, which for different bacteria appears to be somewhat dependent on …

The Cis-Δ2,3-Double Bond Of Phoslactomycins Is Generated By A Post-Pks Tailoring Enzyme, Nadaraj Palaniappan, Mamoun M. Alhamadsheh, Kevin A. Reynolds

Chemistry Faculty Publications and Presentations

The antifungal phoslactomycins (PLM A-F), produced by Streptomyes sp HK803, are structurally unusual in that three of their four double bonds are in the cis form (Δ^12,13, Δ^14,15, Δ^2,3). The PLM polyketide synthase (PKS) has the predicted dehydratase catalytic domain in modules 1,2 and 5 required for establishing two of these cis double bonds (Δ^12,13Δ^14,15), as well as the only trans Δ^6,7double bond. By contrast, the formation of the cis Δ^2,3 in the unsaturated lactone moiety of PLMs has presented an enigma because the predicted dehydratase domain …

Introduction To Special Section On Microcosms In Ice: The Biogeochemistry Of Cryoconite Holes, Andrew G. Fountain, Martyn Tranter

Geology Faculty Publications and Presentations

Cryoconite holes are small, water filled, cylindrical melt-holes on glacial ice surface. Cryoconite, 'cold dust,' refers to the thin layer of sediment at the hole bottom. The holes form from surficial sediment patches that absorbs more solar radiation than the surrounding ice and which preferentially melt into the glacier forming a cylindrical water-filled hole. These holes form on the ice-covered, as opposed to snow covered, parts of glaciers world-wide, wherever there is sufficient energy for melting. Biogeochemically, cryoconite holes are interesting because the sediment is inncoculated with biologic material, a fraction of which thrives in the cryoconite environment of near-freezing …

Plagioclase Populations And Zoning In Dacite Of The 2004–2005 Mount St. Helens Eruption: Constraints For Magma Origin And Dynamics, Martin J. Streck, Cindy A. Broderick, Carl R. Thornber, Michael A. Clynne, John S. Pallister

Geology Faculty Publications and Presentations

We investigated plagioclase phenocrysts in dacite of the 2004–5 eruption of Mount St. Helens to gain insights into the magmatic processes of the current eruption, which is char­acterized by prolonged, nearly solid-state extrusion, low gas emission, and shallow seismicity. In addition, we investigated plagioclase of 1980–86 dacite.

Light and Nomarski microscopy were used to texturally characterize plagioclase crystals. Electron microprobe analy­ses measured their compositions. We systematically mapped and categorized all plagioclase phenocrysts in a preselected area according to the following criteria: (1) occurrence of zones of acicular orthopyroxene inclusions, (2) presence of dissolution surface(s), and (3) spatial association of 1 …

Patterns Of Aspect-Oriented Design, Black P. Andrew, James Noble, David J. Pearce, Arno Scmidmeir

Computer Science Faculty Publications and Presentations

Aspect-oriented programming languages are becoming commonplace, and programmers are accumulating experience in building and maintaining aspect-oriented systems. This paper addresses how the use of these languages affects program design: how aspect-oriented languages change the design space, which designs should be emulated and which avoided, and the strengths and weaknesses of particular kinds of design. We identify five patterns of aspect-oriented design: Spectator, Regulator, Patch, Extension, and Heterarchical Design. For each pattern, we describe the problem it solves, show how aspect-oriented language features are used in the pattern, give characteristic examples of the pattern’s use, and assess its benefits and liabilities. …

Scalable Concurrent Hash Tables Via Relativistic Programming, Josh Triplett

Computer Science Faculty Publications and Presentations

Existing approaches to concurrent programming often fail to account for synchronization costs on modern shared-memory multipro- cessor architectures. A new approach to concurrent programming, known as relativistic programming, can reduce or in some cases eliminate synchronization overhead on such architectures. This approach avoids the costs of inter-processor communication and memory access by permitting processors to operate from a relativistic view of memory provided by their own caches, rather than from an absolute reference frame of memory as seen by all processors. This research shows how relativistic programming techniques can provide the perceived advantages of optimistic synchronization without the useless parallelism …

Reconstructing Images As Piecewise Smooth Functions, Ralf Juengling

Computer Science Faculty Publications and Presentations

Leclerc’s approach to image reconstruction consists of finding the shortest description of the data (an image) as a model (reconstruction) plus noise [5]. The approach poses two design problems: 1. Define an appropriate description language for image models and noise, 2. Derive an objective function and conceive an optimization algorithm that finds good local minima. Leclerc proposed to model images as piecewise low order polynomials and to describe models in terms of region boundaries (discontinuity set) and polynomial coefficients.

In this report I describe Leclerc’s methodology, and, adopting his image model and description language, derive an objective function within this …

Biogeochemical Evolution Of Cryoconite Holes On Canada Glacier, Taylor Valley, Antarctica, Elizabeth A. Bagshaw, Martyn Tranter, Andrew G. Fountain, Kathleen A. Welch, Hassan J. Basagic, W. Berry Lyons

Geography Faculty Publications and Presentations

The cryoconite holes of the McMurdo Dry Valleys are simple, closed biogeochemical systems involving water, ice, mineral and organic debris, which serve as ecosystems for consortia of microorganisms. This study is the first to document the seasonal and annual chemical evolution of solutes in cryoconite holes. Samples of glacier ice, frozen cryoconite holes and those containing water were collected during the austral summer of 2005–2006. The isolation age was calculated from the excess Cl‾ in the holes, and varied from 0 to 5 years (a), consistent with the last hot summer when the cryoconite holes were open to the atmosphere. …

Goal-Oriented Job Scheduling For Parallel Computer Systems, Sangsuree Vasupongayya

Dissertations and Theses

System administrators for parallel computers face many difficulties when managing job scheduling systems. First, current production job schedulers use many parameters, which seem flexible but it is highly challenging to configure and tune these parameters. Second, fair share is an important scheduling goal, but it is not clear what kind of fair share can be expected under current schedulers and how fair share impacts scheduling performance. Third, several job runtime prediction methods were proposed to improve inaccurate user-estimated runtimes, but these methods could under-estimate runtimes by a large amount and it is not clear whether they are practical for use …

Analysis Of Freight Tours In A Congested Urban Area Using Disaggregated Data: Characteristics And Data Collection Challenges, Miguel Andres Figliozzi, Lynsey Kingdon, Andrea Wilkitzki

Civil and Environmental Engineering Faculty Publications and Presentations

Confidentiality issues are usually an insurmountable barrier that precludes the collection of detailed and complete freight data. However, when detailed disaggregated truck activity data is available, the analysis of commercial vehicle routes and trip chain structures can provide insightful information about urban commercial vehicle tours, travel patterns, and congestion levels. Where truck data is usually aggregated and cross-sectional, this research analyzes several months of detailed truck activity records in a congested urban area and thus contributes a level of investigation unavailable with aggregated data. To the best of the author's knowledge, there is no published research regarding the analysis of …

The Distribution And Reproductive Success Of The Western Snowy Plover Along The Oregon Coast - 2007, David J. Lauten, Kathleen J. Castelein, Raya Pruner, Marvin Friel, Eleanor P. Gaines

Institute for Natural Resources Publications

From 3 April – 21 September 2007, we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius alexandrinus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek, Tenmile Creek, Coos Bay North Spit, Bandon Beach, and New River. Our objectives for the Oregon coastal population in 2007 were to: 1) estimate the size of the adult Snowy Plover population, 2) locate plover nests, 3) continue selected use of mini-exclosures (MEs) to protect nests from predators …

Research Students In The Electronic Age: Impacts Of Changing Information Behavior On Information Literacy Needs, Kirsty Williamson, Vivienne Bernath, Steven Wright, Jen Sullivan

Communications in Information Literacy

Because of the rapid uptake of information and communication technology (ICT), understanding the ways in which information seeking has changed over the past decade is crucial to gaining a picture of how information literacy needs may also be changing in the electronic age. This qualitative research took an interpretivist/ constructivist approach in examining the ways in which access to electronic information-seeking affects the information literacy needs of 15 research students in an Australian university setting. An ethnographic technique, the interview, was used for the data collection. Three particular areas, related to information seeking and use, were selected: (1) information source …

Active Learning With Interactive Whiteboards: A Literature Review And A Case Study For College Freshmen, Robert Schroeder

Communications in Information Literacy

A well-designed classroom that includes appropriate technology can inspire and support successful instructional design. Interactive whiteboards (IWBs), an example of this technology, have been adopted in Great Britain, primarily in primary and secondary schools. While the literature anecdotally suggests that there are benefits associated with using them in classroom instruction little has been written about their application and efficacy in higher education. The author describes an exercise designed for college freshman, and discusses the benefits of the group work and active assignments engendered by the IWB.

Templated Fabrication Of Large Area Subwavelength Antireflection Gratings On Silicon, Chih-Hung Sun, Wei-Lun Min, Nicholas C. Linn, Peng Jiang, Bin Jiang

Mathematics and Statistics Faculty Publications and Presentations

We report a cheap and scalable bottom-up technique for fabricating wafer-scale, subwavelength-structured antireflection coatings on single-crystalline silicon substrates. Spin-coated monolayer colloidal crystals are utilized as shadow masks to generate metallic nanohole arrays. Inverted pyramid arrays in silicon can then be templated against nanoholes by anisotropic wet etching. The resulting subwavelength gratings greatly suppress specular reflection at normal incidence. The reflection spectra for flat silicon and the templated gratings at long wavelengths agree well with the simulated results using a rigorous coupled wave analysis model. These subwavelength gratings are of great technological importance in crystalline silicon solar cells.

The Impacts Of Congestion On Commercial Vehicle Tours Characteristics And Costs, Miguel A. Figliozzi

Civil and Environmental Engineering Faculty Publications and Presentations

Congestion is a common phenomenon in all major cities of the world. Increased travel time and uncertainty brought about by congestion impacts the efficiency of logistics operations. Recent studies indicate that a significant proportion of commercial vehicle kilometers traveled (VKT) and vehicle hours traveled (VHT) are generated by trip-chains or multi-stop tours. This paper presents research demonstrating the impact of congestion on multi-stop tours in urban areas. An analytical model, numerical experiments, and real-world tour data are used to understand the impact of congestion on tour characteristics, carriers? costs, VKT, and VHT. This research shows that travel time/distance between customer …

Report On Nutria Management And Research In The Pacific Northwest, Trevor Sheffels, Mark Sytsma

Center for Lakes and Reservoirs Publications and Presentations

The nutria (Myocastor coypus) is a large semi-aquatic mammal native to South America that has been introduced to numerous countries around the world, primarily for fur farming. Nutria were introduced in Oregon and Washington in the 1930s, and feral populations were documented in 1943. Populations are known to be expanding in both Oregon and Washington, and regional nutria damage and nuisance complaints have increased in recent years. Most of the extensive damage caused by nutria is a direct result of feeding and burrowing, but nutria are also capable of transporting parasites and pathogens transmittable to humans, livestock, and …

What Is Rcu, Fundamentally?, Paul E. Mckenney, Jonathan Walpole

Computer Science Faculty Publications and Presentations

Read-copy update (RCU) is a synchronization mechanism that was added to the Linux kernel in October of 2002. RCU achieves scalability improvements by allowing reads to occur concurrently with updates. In contrast with conventional locking primitives that ensure mutual exclusion among concurrent threads regardless of whether they be readers or updaters, or with reader-writer locks that allow concurrent reads but not in the presence of updates, RCU supports concurrency between a single updater and multiple readers. RCU ensures that reads are coherent by maintaining multiple versions of objects and ensuring that they are not freed up until all pre-existing read-side …

Faculty Senate Monthly Packet November 2007, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The November 2007 Monthly packet includes the November agenda and appendices and the Faculty Senate minutes and attachments from the meeting held October 2007