Digital Commons Network^™

Anatomical Analysis Of Somatic Mutation Accumulation In Mimulus Guttatus, Amanda Burrell

University Honors Theses

Plants are seemingly immortal in their abilities to survive long periods of dormancy in different life stages, live for thousands of years, and even grow into whole forests from one clone, all through a series of mitotic and meiotic events, but how many mutations do plants acquire in their lifetime? And just how many of these mutations are heritable? To answer these questions, first we must answer: how many cell divisions are there in the length of a stem? The purpose of this study is to answer just that by establishing a protocol for estimating the number of germ cell …

Spanning Trees Of Complete Graphs And Cycles, Minjin Enkhjargal

University Honors Theses

Spanning trees are typically used to solve least path problems for finding the minimal spanning tree of a graph. Given a number t ≥ 3 what is the least number n = α(t) such that there exists a graph on n vertices having precisely t spanning trees? Specifically, how will the factoring of t with the use of cycles connected by one vertex affect α(t)? Lower and upper bounds of α(t) are graphed by using properties of cycles and complete graphs. The upper bound of α(t) is then improved by constructing a graph of connected cycles {C_p1, C­ …

One-Sided Derivative Of Distance To A Compact Set, Logan S. Fox, Peter Oberly, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

We give a complete and self-contained proof of a folklore theorem which says that in an Alexandrov space the distance between a point γ(t) on a geodesic γ and a compact set K is a right-differentiable function of t. Moreover, the value of this right-derivative is given by the negative cosine of the minimal angle between the geodesic and any shortest path to the compact set (Theorem 4.3). Our treatment serves as a general introduction to metric geometry and relies only on the basic elements, such as comparison triangles and upper angles.

Learned Dual-View Reflection Removal, Simon Niklaus, Xuaner Cecilia Zhang, Jonathan T. Barron, Neal Wadhwa, Rahul Garg, Feng Liu, Tianfan Xue

Computer Science Faculty Publications and Presentations

Traditional reflection removal algorithms either use a single image as input, which suffers from intrinsic ambiguities, or use multiple images from a moving camera, which is inconvenient for users. We instead propose a learning-based dereflection algorithm that uses stereo images as input. This is an effective trade-off between the two extremes: the parallax between two views provides cues to remove reflections, and two views are easy to capture due to the adoption of stereo cameras in smartphones. Our model consists of a learning-based reflection-invariant flow model for dual-view registration, and a learned synthesis model for combining aligned image pairs. Because …

Multi-Institutional Study Of Self-Efficacy Within Flipped Chemistry Courses, Nicole Naibert, Kerry D. Duck, Michael M. Phillips, Jack Barbera

Chemistry Faculty Publications and Presentations

Active learning environments have been shown to be beneficial for student learning; however, including such activities can be limited by the class time available. One method that can provide more opportunities for active learning during face-to-face class time is the flipped learning approach. However, studies on the impacts of flipped learning environments on student motivation are limited. Therefore, in this multi-institutional study, general chemistry students enrolled in flipped courses at three institutions responded to measures of self-efficacy and self-regulatory strategies. The results from these measures were used to evaluate how students’ academic self-efficacy (ASE) and chemistry self-efficacy (CSE) changed over …

Tribal Revegetation Project Final Project Report: 92-Acre Area, Area 5 Radioactive Waste Management Complex, Nevada National Security Site, Nevada, Jeremy Spoon, Brittany Kruger, Richard Arnold, Kate Monti Barcalow, Tribal Revegetation Committee, Trc

Anthropology Faculty Publications and Presentations

Nuwu (Southern Paiute), Newe (Western Shoshone), and Nuumu (Owens Valley Paiute) are linguistically related, Numic-speaking peoples who are part of the broader Uto-Aztecan language group. Numic peoples view the land as a holistic, living, sentient being with feelings and purpose. The land is personified with human characteristics and it needs to be experienced to be understood through “learning by doing.” Numic peoples do not support ground disturbing activities within their ancestral lands, including activities tied to the storage of low-level radioactive waste or classified materials on the NNSS, which they view as culturally inappropriate. These deep-rooted ancestral connections are the …

Molecules To Mountains: A Multi-Proxy Investigation Into Ancient Climate And Topography Of The Pacific Northwest, Usa, Alexander Mclean, John Bershaw

Geology Faculty Publications and Presentations

We characterize the topographic evolution of the Pacific Northwest, United States, during the Cenozoic. New paleosol carbonate stable isotope (δ18O) results from central Oregon are presented, along with published proxy data, including fossil teeth, smectites, and carbonate concretions. We interpret a polygenetic history of Cascade Mountain topographic uplift along-strike, characterized by: 1) Steady uplift of the Washington Cascades through the Cenozoic due long-term arc rotation and shortening against a Canadian buttress, and 2) Uplift of the Oregon Cascades to similar-to-modern elevations by the late Oligocene, followed by topographic stagnation as extension developed into the Neogene. Since the Miocene, meteoric water …

Evaluation Of Manual And Semi-Automated Deep-Seated Landslide Inventory Processes: Willapa Hills, Washington, Tiffany E. Justice

Dissertations and Theses

Recent advances in remote sensing data and technology have allowed for computational models to be designed that successfully extract landforms from the landscape. The goal of this work is to create one such semi-automated model to extract deep-seated landslides located in complex geomorphic terrain. This is accomplished using geographic object-based image analysis (GEOBIA) techniques, considered by leaders in the field of image analysis to have an advantage over traditional automated classification methods. GEOBIA methods can mimic human visual interpretation by including more characteristic features used to assess the relationship between image data and the ground surface such as color reflectance …

Glacier Clear Ice Bands Indicate Englacial Channel Microbial Distribution, Gilda Varliero, Alexandra Holland, Gary L. A. Barker, Marian L. Yallop, Andrew G. Fountain, Alexandre M. Anesio

Geology Faculty Publications and Presentations

Distant glacial areas are interconnected by a complex system of fractures and water channels which run in the glacier interior and characterize the englacial realm. Water can slowly freeze in these channels where the slow freezing excludes air bubbles giving the ice a clear aspect. This ice is uplifted to the surface ablation zone by glacial movements and can therefore be observed in the form of clear surface ice bands. We employed an indirect method to sample englacial water by coring these ice bands. We were able, for the first time, to compare microbial communities sampled from clear (i.e. frozen …

Polymorphism And Polysemy In Images Of The Sefirot, Martin Zwick

Complex Systems Faculty Publications and Presentations

The resurgence of interest in Kabbalistic diagrams (Segol, Busi, Chajes) raises the question of how diagrams function in religious symbolism. This question can be approached via methods used in the graphical modeling of data. Specifically, graph theory lets one define a repertoire of candidate structures that can be applied not only to quantitative data, but also to symbols consisting of qualitative components. A graph is a set of nodes and links between nodes. What nodes and links are is unspecified in this definition. The Kabbalistic Ilan is – partially – a graph. The Sefirot are its nodes; the paths connecting …

On Ip2 Impact To Nonlinear Distortion Of Rf Amplifiers, Xianzhen Yang, Shiyu Li, Siyuan Yan, Fu Li

Electrical and Computer Engineering Faculty Publications and Presentations

The second-order distortion, often using second-order intercept point (IP2) as an indicator, has been considered easy to be filtered in narrowband radio frequency (RF) communications because it is located far away from the passband of transmitted signals. However, with rapidly increased applications in wideband RF communications, the secondorder intermodulation (IM) might become important, partially evidenced by the increased appearances of IP2 in the amplifier datasheets in recent years. In this article, a power spectrum model of the second-order IM is derived to quantify the second-order distortion using the IP2. This model could be used to determine under what conditions, in …

How To Effectively Manage Virtual Teams Created Due To Covid-19?, Aakanksha Santosh Rane

University Honors Theses

With the spread of COVID-19 and the social distancing regulations in place, multiple organizations have transitioned their workplace to a virtual setting. With the increase in business' transitioning to remote teams, it is first crucial to understand the various needs and characteristics of virtual teams. Through the analysis of multiple peer-reviewed articles and other texts on virtual teams, this study identifies building trust, effective communication, and performance management as the main points of focus in order to ensure effectiveness of virtual teams.

Walking As A Way Of Knowing: An Autoethnography Of Embodied Inquiry, Lauriel-Arwen Amoroso

Dissertations and Theses

The purpose of this study was to understand and describe the role of walking in my own ways of knowing and to explore how walking itself is an epistemological process by using personal narrative to examine and story my experience. I used an embodied narrative research method, known as evocative autoethnography, in which I explored my own innate ways of knowing, including intellectual, embodied, emotional, and spiritual knowledge. I collected data using field notes, reflective journaling, reviewing past writing, and artistic interpretations of experiences such as photography and poetry. I compiled my data into a series of short essays, stories, …

An Analysis Of Suspended Sediment Dynamics In A Partially Mixed Estuary, Riyadh Hamad Muttaleb

Dissertations and Theses

The purpose of this work is to investigate via data analysis and numerical modeling the SPM (suspended particulate matter) dynamics of a heavily contaminated partially urban estuary, the Lower Passaic River estuary (LPR), NJ. Accordingly, I investigate the quantity and mechanics of variation of fine and coarse SPM in the LPR via data analysis. Data analysis focuses on the parameters that affect SPM dynamics at six moored stations occupied during the Fall and Spring seasons, from near the estuary mouth to tidal freshwater. A 3D hydrodynamic model (Delft3D-FM) is used to analyze the effects of estuary topography on the dynamic …

The Perceptions Of Rural Teachers Engaged In Environmental Education Professional Development Workshops: A Case Study Of The Alder Creek Community Forest And The Story Of Your Place, Bryan R. Benz

Dissertations and Theses

Environmental issues can be difficult for people to understand and for teachers to address in their classrooms. Issues such as climate change and ozone depletion are difficult to comprehend and present a challenge for most people to understand thoroughly the complexity of these environmental challenges. Professional development programs could provide the tools for teachers to improve their environmental literacy and a pathway for learning new methods for engaging their students. However, in rural Oregon, where professional development opportunities are scarce, teachers rely on a lean supply of organizations to provide these experiences. Alder Creek Community Forest, a nonprofit organization, provides …

Thermodynamics Of Ligand Binding And Global Structural Stability Of Human Serum Albumin, Matthew Walter Eskew

Dissertations and Theses

Protein structure is integral to its function. For the past 70 years differential scanning calorimetry has been used to measure protein structural stability. More recently it has been used to study macromolecular interactions. Interactions between proteins and ligands can manifest on differential scanning calorimetry melting curves or thermograms. Utilizing differential scanning calorimetry thermograms to detect or diagnose diseases has been a major goal in disease diagnostics. However, correlating specific ligand-protein interactions, as manifested in a thermogram, with a disease-specific plasma thermogram, has proven elusive.

Modified human serum albumin was utilized to develop a process to capture and retrieve ligands from …

Complex Fluid Dynamics: Chemo-Hydrodynamics Driven By Autocatalytic Reaction Fronts, Matthew Walter Eskew

Dissertations and Theses

Chemo-hydrodynamics generated from reaction-diffusion-convection processes of autocatalytic chemical systems are extensively studied for their applications in modeling complex systems. Compared to the more extensively studied autocatalytic systems, chlorite-tetrathionate and chlorite-trithionate, the chlorite-thiourea systems is relatively unexplored. Compared to the two previous systems, chlorite-thiourea has more straightforward chemical kinetics. To narrow the gap between chlorite-thiourea and the other systems a combination of experimental study and numerical simulation were employed to quantify this system.

Compared to established literature, experiments were performed at five orders of magnitude lower concentration of indicator, minimizing confounding effects of indicator on hydrodynamic motion. To accurately image the …

Memristor Crossbar Array Testing Using Sneak Paths, Rasika Dhananjay Joshi

Dissertations and Theses

Moore's law decline has paved the way to shift to new technologies at architectural and device levels. CMOS based technologies are facing many challenges with the growing demand for miniaturization. The growing heat dissipation is the major limitation for performance, energy efficiency and reliability with the increasing transistor count in integrated circuits. Manufacturing costs and process/memory performance gap have also grown steadily over the last several decades with the scaling down of the CMOS feature size. Memristor, a nanoscale device, has the potential to address the CMOS limitations because of its non-volatility, high density, low power operation, low cost per …

Evolving Tides Aggravate Nuisance Flooding Along The U.S. Coastline., Sida Li, Thomas Wahl, Stefan A. Talke, David A. Jay, Philip M. Orton, Xinghui Liang, Guocheng Wang, Lintao Liu

Civil and Environmental Engineering Faculty Publications and Presentations

Nuisance flooding (NF) is defined as minor, nondestructive flooding that causes substantial, accumulating socioeconomic impacts to coastal communities. While sea-level rise is the main driver for the observed increase in NF events in the United States, we show here that secular changes in tides also contribute. An analysis of 40 tidal gauge records from U.S. coasts finds that, at 18 locations, NF increased due to tidal amplification, while decreases in tidal range suppressed NF at 11 locations. Estuaries show the largest changes in NF attributable to tide changes, and these can often be traced to anthropogenic alterations. Limited long-term measurements …

Altimetry For The Future: Building On 25 Years Of Progress, Saleh Abdalla, Abdolnabi Kolahchi, Micheal Ablain, Susheel Adusumilli, Suchandra Aich Bhowmick, Eva Alou-Font, Laiba Amarouche, Ole Baltazar Andersen, Edward Zaron, Multiple Additional Authors

Civil and Environmental Engineering Faculty Publications and Presentations

In 2018 we celebrated 25 years of development of radar altimetry, and the progress achieved by this methodology in the fields of global and coastal oceanography, hydrology, geodesy and cryospheric sciences. Many symbolic major events have celebrated these developments, e.g., in Venice, Italy, the 15th (2006) and 20th (2012) years of progress and more recently, in 2018, in Ponta Delgada, Portugal, 25 Years of Progress in Radar Altimetry. On this latter occasion it was decided to collect contributions of scientists, engineers and managers involved in the worldwide altimetry community to depict the state of altimetry and propose recommendations for the …

Pacific Northwest Littoral Data, Curt D. Peterson, Kara E. P. Kingen

Geology Faculty Datasets

This document contains five data tables in PDF file formats, that are used to characterize littoral subcell (beach, river mouth, and inner-shelf) conditions in the Pacific Northwest (PNW) region (Washington, Oregon, and Northern California). These data have been compiled from pre-existing data sets (see citations in Table notes and References, below) for the purposes of predicting possible beach erosion from potential future sea level rise (SLR), as introduced in Kingen (2018) and Peterson et al. (2019, 2020a,b). The five data tables include Heavy-mineral tracers (Table 1), Heavy-mineral data (normalized) (Table 2), Subcell beach profile settings (Table 3), Subcell beach profile …

The Pacific Sentinel: March/April 2021, Mini Issue, Portland State University. Student Publications Board

The Pacific Sentinel

Editor: Vivian Veidt

Articles in this issue include:

• Letter From the Editor
• Royalty Notwithstanding
• A Man, a Plan, and a Virus
• United We Stand?
• Dreamhouse and Other Horrors
• The Art of the Podcast

Mape-R: A Rescaled Measure Of Accuracy For Cross-Sectional Subnational Population Forecasts, David Swanson, Jeff Tayman, T. M. Bryan

Publications, Reports and Presentations

Accurately measuring a population and its attributes at past, present, and future points in time has been of great interest to demographers. Within discussions of forecast accuracy, demographers have often been criticized for their inaccurate prognostications of the future. Discussions of methods and data are usually at the centre of these criticisms, along with suggestions for providing an idea of forecast uncertainty. The measures used to evaluate the accuracy of forecasts also have received attention and while accuracy is not the only criterion advocated for evaluating demographic forecasts, it is generally acknowledged to be the most important. In this paper, …

Problematizing Perceptions Of Stem Potential: Differences By Cognitive Disability Status In High School And Postsecondary Educational Outcomes, Dara Shifrer, Daniel Mackin Freeman

Sociology Faculty Publications and Presentations

The STEM (science, technology, engineering, and mathematics) potential of youth with cognitive disabilities is often dismissed through problematic perceptions of STEM ability as natural and of youth with cognitive disabilities as unable. National data on more than 15,000 adolescents from the High School Longitudinal Study of 2009 first suggest that, among youth with disabilities, youth with medicated attention-deficit/hyperactivity disorder (ADHD) have the highest levels of STEM achievement, and youth with learning or intellectual disabilities typically have the lowest. Undergraduates with medicated ADHD or autism appear to be more likely to major in STEM than youth without cognitive disabilities, and youth …

Bi-Objective Optimization For Battery Electric Bus Deployment Considering Cost And Environmental Equity, Xiaoyue Cathy Liu, Yirong Zhou, Ran Wei, Aaron Golub, Devin Macarthur

TREC Final Reports

Public transit, compared with passenger cars, can effectively help conserve energy, reduce air pollution, and optimize flow on roadways. In recent years, Battery Electric Bus (BEB) is receiving an increasing amount of attention from the transit vehicle industry and transit agencies due to recent advances in battery technologies and the direct environmental benefits it can offer (e.g., zero emissions, less noise). However, limited efforts have been attempted on the effective deployment planning of the BEB system due to the unique spatiotemporal features associated with the system itself (e.g., driving range, bus scheduling). In this project, we developed an innovative spatiotemporal …

Faculty Senate Monthly Packet March 2021, Portland State University Faculty Senate

Faculty Senate Monthly Packets

The March 1, 2021 Monthly packet includes the March agenda and appendices and the Faculty Senate minutes and attachments from the meeting held February 1, 2021.