Digital Commons Network^™

The Central Role For Troponin C Amino-Terminal ⍺-Helix In Vertebrate Thin Filiment Ca²⁺-Activation, Yun Shi, Lauren A. Blackwell, Ryan K. Schroy, B. Max Cleland, Cristina M. Risi, Michelle S. Parvatiyar, Jose R. Pinto, Vitold E. Galkin, P. Bryant Chase

Department of Biomedical and Translational Sciences Faculty Publications

Troponin C (TnC) is the Ca²⁺-sensing subunit of troponin that is responsible for activating thin filaments in striated muscle, and, in turn, for regulating the systolic and diastolic contractile function of cardiac muscle. The secondary structure of vertebrate TnC is mainly composed of α-helices, with nine helices named sequentially, starting from the amino terminus, from N to A–H. The N-helix is a 12-residue-long α-helix located at the extreme amino terminus of the protein and is the only helical structure that does not participate in forming Ca²⁺-binding EF-hands. Evolutionarily, the N-helix is found only in TnC from mammalian species and most …

Phenotype Specific Nuclear Lamina Remodeling In Hipsc Derived Cardiomyocytes Bearing Tnnt2 Sarcomeric Variants, Isabella Leite Coscarella, Olalekan H. Usman, Lili Wang, Maicon Landim-Vieira, Lillian Wirstiuk, Amber N. Brown, Diego A. R. Zorio, Brian K. Washburn, Cynthia Vied, Bjorn C. Knollmann, Christopher Solís, Vitold E. Galkin, P. Bryant Chase, J. Travis Hinson, Jerome Irianto, Jose Renato Pinto

Department of Biomedical and Translational Sciences Faculty Publications

[Summary] Cardiomyocytes endure physical stress from the myocardium environment while generating their own mechanical strains. The force generated by sarcomeres is transmitted both longitudinally to adjacent sarcomeres and laterally to the cytoskeleton via intermediate filaments. This mechanical stimulus impacts other organelles, including the nucleus, thus playing a vital role in sensing and signaling nuclear adaptations. However, there is limited understanding of how changes in cardiac contractility affect nuclear mechanics. Here, we sought to investigate the effects of hyper- and hypo-contractility in nuclei of human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) bearing TNNT2 pathogenic variants associated with hypertrophic (HCM) or dilated …

Monitoring Plastic Pollution Using Bioindicators: A Global Review And Recommendations For Marine Environments, Matthew S. Savoca, Neil Angelo Abreo, Andres H. Arias, Laura Baes, Matteo Baini, Elisa Bergami, Susanne Brander, C. Anela Choy, Illaria Corsi, Bavo De Witte, Camila Domit, Sarah Dudas, Emily M. Duncan, Claudia E. Fernández, Maria Cristina Fossi, Ostin Garcés-Ordóñez, Brendan J. Godley, Daniel Gonzalez-Parades, Victoria González Carman, Bonnie M. Hamilton, Britta Denise Hardesty, Sang Hee Hong, Shirel Kahane-Rapport, Lauren M. Kashiwabara, Mariana Baptista Lacerda, Guillermo Luna-Jorquera, Clara Manno, Sarah E. Nelms, Cristina Panti, Diego J. Pérez-Venegas, Christopher K. Pham, Jennifer F. Provencher, Sara Purca, Harunur Rashid, Yasmina Rodríguez, Conrad Sparks, Chengjun Sun, Martin Thiel, Catherine Tsangaris, Robson G. Santos

Biological Sciences Faculty Publications

Monitoring the movement of plastic into marine food webs is central to understanding and mitigating the plastic pollution crisis. Bioindicators have been a component of the environmental monitoring toolkit for decades, but how, where, and which bioindicators are used in long-term monitoring programs has not yet been assessed. Moreover, these programs have yet to be synthesized and evaluated globally. Doing so is imperative if we are to learn from these pioneering programs and expand on their efforts. We reviewed global monitoring programs using bioindicators that focus on plastic pollution and found 11 worldwide that met our definition of long-term monitoring. …

Caveolin-Mediated Endocytosis: Bacterial Pathogen Exploitation And Host-Pathogen Interaction, Dibyasri Barman, Rishi Drolia

Biological Sciences Faculty Publications

Within mammalian cells, diverse endocytic mechanisms, including phagocytosis, pinocytosis, and receptor-mediated endocytosis, serve as gateways exploited by many bacterial pathogens and toxins. Among these, caveolae-mediated endocytosis is characterized by lipid-rich caveolae and dimeric caveolin proteins. Caveolae are specialized microdomains on cell surfaces that impact cell signaling. Caveolin proteins facilitate the creation of caveolae and have three members in vertebrates: caveolin-1, caveolin-2, and caveolin-3. Many bacterial pathogens hijack caveolin machinery to invade host cells. For example, the Gram-positive facultative model intracellular bacterial pathogen Listeria monocytogenes exploits caveolin-mediated endocytosis for efficient cellular entry, translocation across the intestinal barrier, and cell–cell spread. Caveolin …

Cellular Responses Of Astrangia Poculata (Ellis And Solander, 1786) And Its Symbiont To Experimental Heat Stress, Tyler E. Harman, Daniel Barshis, Briana Hauff Salas, Kevin B. Strychar

Biological Sciences Faculty Publications

Climate change has had devastating effects on tropical coral reefs; however, much less is known regarding how heat stress affects temperate coral. This research focuses on Astrangia poculata (Ellis and Solander, 1786) collected from Narragansett Bay, RI, during the summer and winter seasons and understanding the effect of experimental thermal extremes (i.e., 26 °C) on seasonally different populations. Photosynthetic efficiency (Fv/Fm), symbiont density (via an inverse relationship with pixel intensity), and oxidative stress via reactive oxygen species (ROS) concentrations were measured on symbiotic and aposymbiotic A. poculata. Higher Fv/Fm rates were observed in summer- vs. winter-collected corals (p ≤ …

The First Iucn Red List Of Cold-Water Corals Highlights Global Declines, Julia D. Sigwart, A. Louise Allcock, Renata Carolina Mikosz Arantes, Kelsey Archer Barnhill, Narissa Bax, Julia S. Beneti, Saskia Brix, Gudmundur Gudmundsson, Catherine S. Mcfadden, Severin A. Korfhage, Christi Linardich, Declan Morrissey, Pedro De Oliveira Nascimento, Bárbara De Moura Neves, Steinunn H. Ólafsdóttir, Stefán Ragnarsson, Kaveh Samimi-Namin, Íris Sampaio, Mark E. De Wilt

Biological Sciences Faculty Publications

The most well-known species-based conservation tool is the International Union for the Conservation of Nature (IUCN) Red List of Threatened Species. The current coverage of species in the Red List is known to under-represent benthic marine species. Cold-water corals (CWCs) are increasingly recognised as key to deep-water biodiversity and integral to protected vulnerable marine ecosystems (VMEs), but no deep-sea coral species were previously included in the Red List. We selected 22 cold-water coral species in the Northeast Atlantic, including 4 reef-forming stony corals and 18 octocorals including sea pens and gorgonians, and completed the first IUCN Red List global assessments …

Thermal Tolerance Limits Of Mesophotic Corals In American Samoa, Daniel Barshis, Veronica Z. Radice, Katherine E. Parker, Nicholas Evensen

Biological Sciences Faculty Publications

We analyzed the thermal tolerances of multiple coral species from an upper mesophotic (38–40m) and a shallow reef (5–10m) with our portable Coral Bleaching Automated Stress System (CBASS). Depth generalist Montipora grisea (deep and shallow) and depth specialists Pachyseris speciosa and Leptoseris sp. (deep only) were assayed from Leone, located on the western coast of Tutuila in American Samoa. Fragments from 10 genotypes of each species were exposed to a 17-hour thermal stress assay reaching four maximum temperatures ranging from 30–38°C under in situ light conditions (150 μmol photons m⁻² s⁻¹ under a Lee Filters “deep …

A Multispecies, Multisite Assessment Of Coral Thermal Tolerances In American Samoa, Using Acute Heat Stress Assays, Ponchanok Weeriyanun, Nicolas R. Evensen, Katherine E. Parker, Veronica Z. Radice, Daniel J. Barshis

Biological Sciences Faculty Publications

Reef-building corals are being impacted by increasing seawater temperatures, with marine heatwaves leading to mass bleaching events and extensive mortality. However, corals can display variation in thermal tolerance, both within and among species. In this study, we sampled four coral species (Acropora hyacinthus, Montipora grisea, Pocillopora verrucosa, and Porites lobata) from two sites on Tutuila, American Samoa, with contrasting environmental regimes but similar Maximum Monthly Means (MMM). Coral fragments were subjected to short-term acute heat stress experiments using the Coral Bleaching Automated Stress System (CBASS). PAM Fluorometry was used to measure the symbiont’s effective quantum yield (Fv/Fm) following heat stress …

Squid Paralarvae Turn With High Agility Using Jets Near The Reynolds Number Threshold For Viscous Domination, Ian K. Bartol, Alissa M. Ganley, Paul S. Krueger, Joseph T. Thompson

Biological Sciences Faculty Publications

Turning is critical for survival in the ocean, as marine animals need to maneuver to capture prey, elude predators, and navigate complex environments. While prior research has focused on turning performance of adult swimmers, less is known about early ontogenetic stages that locomote within lower Reynolds number (Re) regimes, especially young jetters. To evaluate squid paralarval turning proficiency and the role of the pulsed jet in maneuvers, recently hatched longfin squid Doryteuthis pealeii swimming in a viewing chamber were studied using digital particle image velocimetry and kinematic motion analyses. Paralarvae exhibited a wide repertoire of turning behaviors, including those performed …

Building Heat-Resilient Caribbean Reefs: Integrating Thermal Thresholds And Coral Colonies Selection In Restoration, Macarena Blanco Pimentel, Johanna Calle-Triviño, Daniel J. Barshis, Sancia E. T. Van Der Meij, Megan K. Morikawa

Biological Sciences Faculty Publications

Caribbean reefs face increasingly frequent and intense bleaching events, adding to the numerous other threats impacting these ecosystems. Addressing these challenges requires global action to reduce climate drivers, along with local efforts like reef restoration. Active restoration using thermotolerant coral colonies offers a potential strategy to alleviate these impacts; however, gaps remain in identifying context-specific temperature thresholds to guide colony selection and standardize thermotolerance assessment methods. This study addressed these gaps in two phases. First, by determining practical thresholds to differentiate species responses to heat stress; and second, by developing a framework to identify and prioritize resilient colonies for restoration. …

Efficacy Of Stress Acclimation Techniques In Coastal Wetland Plants (Spartina Alterniflora And S. Patens): Implications For Restoration And Nursery Production, Taylor M. Sloey, Kylie D. Gieser, Kaitlyn Pounders, Sofía E. Báez, Jennifer L. Whytlaw

Biological Sciences Faculty Publications

The implementation of coastal nature-based features, created wetlands, and wetland restoration has increased globally over recent years. Many of these projects have been successful in meeting their goals, however, when projects fail, it is often attributed to mortality of transplanted vegetation. Transplant mortality may be due to inappropriate timing, poor site selection, or abiotic stressors associated with transplant shock. Science-backed guidelines have been well established in many coastal regions regarding site specifications and species selection, but nursery practices for reducing transplant shock remain inconsistent. In this study, we tested a combination of four salinity acclimation treatments and two inundation acclimation …

Biotime 2.0: Expanding And Improving A Database Of Biodiversity Time Series, Maria Dornelas, Laura H. Antão, Amanda E. Bates, Viviana Brambilla, Jonathan M. Chase, Cher F. Y. Chow, Ada Fontrodona-Eslava, Anne E. Magurran, Inês S. Martins, Faye Moyes, Alban Sagouis, Samuel Adu-Acheampong, Daniel Acquah-Lamptey, Dušan Adam, Penelope A. Ajani, Aitor Albaina, Pablo Almaraz, Jeongseop An, Roger Sigismund Anderson, Madelaine Jean Robertson Anderson, Alexsander Z. Antunes, Ivan Arismendi, Linda Armbrecht, Pedro Aros-Mardones, Sreejith Kalpuzha Ashtamoorthy, Narayanan Ayyappan, Gal Badihi, Joseph J. Bailey, Andrew H. Baird, Mark Edward Baird, Sreekumar Vadakkethil Balakrishnan, José António L. Barão-Nóbrega, Adi Barash, Miguel Barbosa, Jos Barlow, Claus Bässler, Matthieu Beaumont, Natalie Beenaerts, Tiago Octavio Begot, Wallace Beiroz, Ricardo Beldade, David M. Bell, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-Cecchi, Cassandra E. Benkwitt, Pamela Medina-Van Berkum, Brandon T. Bestelmeyer, Matthew C. Betts, Maxwell Kelvin Billah, Anne D. Bjorkman, Magdalena Błażewicz, Christopher P. Bloch, Shane A. Blowes, Antonio Bode, Juliano A. Bogoni, Thomas Bolger, Timothy C. Bonebrake, Erik Bonsdorff, Roberta Bottarin, Luke N. Brokensha, Rob W. Brooker, Andrew J. Brooks, Helge Bruelheide, Thiago Almeida Bueno, Claire Laguionie, Mariana Lopes Campagnoli, James Cant, Erica Pellegrini Caramaschi, Alexandre Caron, Tadhg Carroll, Tancredi Caruso, Juan Carvajal-Quintero, Giuseppe Castaldelli, Edward Castañeda-Moya, Pedro V. Castilho, Sonia Zanini Cechin, Shahar Chaikin, Uchangi Manjunatha Chandrashekara, Tory J. Chase, Chaolun Allen Chen, Jorge José Cherem, Sei-Woong Choi, Erica M. Christensen, Alexander V. Christianini, Jackson Wing Four Chu, Peter Coad, Carl Van Colen, Lise Comte, Elisabeth J. Cooper, J. Hans C. Cornelissen, Eddy Cosson, Unai Cotano, Luc Crevecoeur, Shannan Kyle Crow, Graeme S. Cumming, Vanessa S. Daga, Gabriella Damasceno, Gergana N. Daskalova, Claire H. Davies, Robert A. Davis, Frank P. Day, Sussy De-La-Zerda, Amy Elizabeth Deacon, Indradatta De Castro-Arrazola, Steven Degraer, Kharran Deonarinesingh, Juan C. Diaz-Ricaurte, Christopher R. Dickman, Tara Dirilgen, Ciaran John Dolan, J. Emmett Duffy, Timothy E. Dunn, Giselda Durigan, Ciara Dwyer, Steven Earl, Dor Edelist, Graham John Edgar, Sally Edmonson, Ashley K. Elgin, Kari Elsa Ellingsen, Sarah C. Elmendorf, Ruth S. Eriksen, S. K. Morgan Ernest, Ruben Escribano, Paula Cabral Eterovick, Brian S. Evans, Jason D. Everett, Vesela Evtimova, Dan A. Exton, Andrew J. Fairbairn, Filipe Moreli Fantacini, Fabiano Turini Farah, Fábio Zanella Farneda, Mario E. Favila, Philippe Fernandez-Fournier, Braulio Fernández-Zapata, Diogo F. Ferreira, Carola Ferronato, Christopher R. Du Feu, Alessandra Fidelis, David A. Fifield, Vilmar Picinatto Filho, Walter Mesquita Filho, Robert N. L. Fitt, Carlos A. H. Flechtmann, William R. Fraser, Donna L. Fraser, Lídia Freixas, John Fryxell, Garrett J. Fundakowski, Scott Stanley Gabara, Elise Gallois, Mariana Garcia Criado, Emili García-Berthou, Joaquim Garrabou, Andrew R. Gates, Roberto Cazzola Gatti, Anna Gavioli, Tal Gavriel, Benoit Gendreau-Berthiaume, Xingli Giam, Carina Gjerdrum, Michael Glemnitz, Jasmin Annica Godbold, Daniel Gómez-Gras, Rodrigo Barbosa Gonçalves, Andy Goold, Richard R. Gordon, Menachem Goren, Fernando Vilas Boas Goulart, William G. Gould, Meagan M. Graboski, Nicholas A. J. Graham, Maurício Eduardo Graipel, Laura J. Grange, Aaron C. Greenville, Gary D. Grossman, Valeria A. Guinder, Peter Haase, Gary N. Haskins, Kris Havstad, Luise Hermanutz, Michael Julian Hames Hickford, Pamela Hidalgo, Pedro Higuchi, Andrew S. Hoey, Gert Van Hoey, Annika Hofgaard, Kristen T. Holeck, Robert D. Hollister, Richard T. Holmes, Mia Odell Hoogenboom, Joaquín Hortal, Tammy Horton, Chih-Hao Hsieh, Christine L. Huffard, Ida-Maria Huikkonen, Allen H. Hurlbert, Julian Hynes, Pascal Irz, Natalia Macedo Ivanauskas, Akemi Iwayama, Darren K. James, Ute Jandt, Anna M. Jażdżewska, Merlijn Jocque, Sophie T. Johnston, Samuel E. I. Jones, Faith A. M. Jones, Julia A. Jones, Edite Jucevica, Ugis Kagainis, Maiko Kagami, Jungwon Kang, Xuejia Ke, Erin Colleen Keeley, Rebecca Kinnear, Kari Klanderud, Uwe Klinck, Roel Van Klink, Stefan Klotz, Carolien Kockaert, Halvor Knutsen, Matti Koivula, Alessandra Kortz, Peter Kriegel, Chao-Yang Kuo, David J. Kushner, Rosina Kyerematen, Raphaël Lagarde, Lesley T. Lancaster, Ori Frid Landau, Wouter Van Landuyt, Eric R. Larson, Mai Lazarus, Cheol Min Lee, Jonathan S. Lefcheck, Jonas J. Lembrechts, Renato A. Ferreira De Lima, Romullo Guimarães Lima, Nathália G. S. Lima, Cristina Linares, Sandra C. Lindstrom, Francisco Lloret, John David Lloyd, Cleonice Maria Cardoso Lobato, David M. Lodge, Peter Richard Long, Celeste López-Abbate, Adrià López-Baucells, Julio Louzada, Maite Louzao, Antonella Lugliè, Micheli Ribeiro Luiz, S. Ellen Macdonald, Joshua S. Madin, André Lincoln Barroso Magalhães, Rajindra Mahabir, David Maphisa, Thomas Edward Martin, Marcio Martins, Patrick T. Martone, Silvia Matesanz, Shin-Ichiro S. Matsuzaki, Thomas J. Matthews, Iain Mccombe Matthews, Connie J. Maxwell, Kent P. Mcfarland, Brian J. Mcgill, Diane Marie Mcknight, Michael J. Mcwilliam, Jason Meador, Henning Meesenburg, Kristin Meier, Viesturs Melecis, Peter L. Meserve, Christoph F. J. Meyer, Anders Michelsen, Natali Olivia Roman Miiller, Marco Milardi, Nataliya Milchakova, Robert J. Miller, Jonathan Millett, Tom Moens, Luciano F. A. Montag, Jon Moore, Jörg Müller, Akhil Murali, Shauna Ann Murray, Isla H. Myers-Smith, Randall W. Myster, Masahiro Nakamura, Sasi Nayar, Francis Neat, James A. Nelson, Michael Paul Nelson, Boris P. Nikolov, Rym Nouioua, Collins Ayine Nsor, Michael O' Connor, Edward Adzesiwor Obodai, Amy Marie Offland, Romà Ogaya, Hisako Ogura, Thomas A. Okey, Julian D. Olden, Luiz Gustavo Rodrigues Oliveira-Santos, Jeffrey C. Oliver, Esben Moland Olsen, Vladimir G. Onipchenko, Daniel Oro, Dais Ozolins, Krzysztof Pabis, Bachisio Mario Padedda, Facundo X. Palacio, Alain Paquette, Sinta Trilestari Pardede, David M. Patersib, Sarah Pausina, Raphaël Pélissier, Steven C. Pennings, Josep Penuelas, Felipe Walter Pereira, Nivaldo Peroni, Sergio Picó, Francesca Pilotto, Hudson Tercio Pinheiro, Oscar Pizarro, Roberto Pizzolotto, Francesco Pomati, Paulo Santos Pompeu, Dominique Ponton, Eric Post, Nicolas Poulet, Juha Pöyry, Steven J. Presley, Herbert H. T. Prins, Pieter Provoost, Kathleen L. Prudic, Vignesh Punjayil, Petr Pyšek, Pascal Querner, Juan Pablo Quimbayo, Indar W. Ramnarine, Daniel C. Reed, Peter Bernard Reich, Suzanne M. Remillard, Cerren Richards, Anthony James Richardson, Itai Van Rijin, Victor H. Rivera-Monroy, Christian Rixen, Kevin Peter Robinson, Ricardo Rocha, Ricardo R. Rodrigues, Cassy Rodrigues, Bjørn De Roos, Denise De C. De Rossa-Feres, Loreta Rosselli, Peter Charles Rothlisberg, Ana Rubio, Lars G. Rudstam, Catalina S. Ruz, Nancy B. Rybicki, Gunther Van Ryckegem, Andrew L. Rypel, Jon P. Sadler, Victor Satoru Saito, Sofia Sal, Renato Portela Salomão, Nathan J. Sanders, Flavio A. M. Santos, Tiago Gomes Dos Santos, Swapan Kumar Sarker, Sara E. Scanga, Marcus Schaub, Jochen Schmidt, Inger Kappel Schmidt, Robert L. Schooley, Alfred Schultz, Alberto Scotti, Amanda Serpell-Stevens, Filipe C. Serrano, Elizabeth H. Shadwick, Matthew Shaft, Thomas W. Sherry, Erika Mayumi Shimabukuro, Jacek Siciński, Caya Sievers, Fernando Rodrigues Da Silva, Ana Carolina Da Silva, Juliana M. Silveira, Tadeu Siqueira, Arunkumar Kavidapadinjattathil Sivadasan, Prasad Theruvil Parambil Sivan, Agnija Skuja, Amalia L. Slaughter, Jasper A. Slingsby, Joseph R. Smith, Bruno Eleres Soares, Martin Solan, Flaviana Maluf Souza, Gabriel B. G. Souza, Joshua L. Sprague, Ulrich Stachow, J. John Stadt, Christopher D. Stallings, Radoslav Hristov Stanchev, Emily H. Stanley, Brian M. Starzomski, Jose Mauro Sterza, Maarten Stevens, F. Gary Stiles, Stefan Stoll, Rick D. Stuart-Smith, Yzel Rondon Súarez, Laura Super, Sarah R. Supp, Tapio Sutela, Iain M. Suthers, Anna Suuronen, Kerrie M. Swadling, Daniel K. Szydlowski, Hisatomo Taki, Sara Jeanne Snell Taylor, Pablo A. Tedesco, Nils Teichert, Akira Terui, Gary P. Thiede, Anne Thimonier, Oliver Thomas, Peter Allan Thompson, Simon Thorn, Jeremy S. Tiemann, Luís Felipe Toledo, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ignasi Torre, Marcos Adriano Tortato, Kumiko Totsu, Andrew Trant, Robert R. Twilley, Hirokazu Urabe, Pierre Valade, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Jan Vanaverbeke, Tiago Silveira Vasconcelos, Teppo Vehanen, Fábio Venturoli, Hans M. Verheye, Hendrik Jannes Wietse Vermeulen, Arne Verstraeten, Marcelo Vianna, Rui Vieira, João Paulo Santos Vieira-Alencar, Marc Vilella, Jean Ricardo Simões Vitule, Lien Van Vu, Robert B. Waide, Paige S. Warren, Joseph Paul Wayman, Sara L. Webb, Benjamin Weigel, Ellen A. R. Welti, Fritha West, Fulgor Westermann, Matthew A. Whalen, Ethan P. White, Claire E. Widdicombe, Richard Williams, Mark Williamson, Michael R. Willig, Sonja Wipf, Eric J. Woehler, Alje Woldering, Kerry D. Woods, Wu-Bing Xu, Ruthy Yahel, Zeren Yang, Kyle J. A. Zawada, Camila Zornosa-Torres, Assaf Zvuloni

Biological Sciences Faculty Publications

Motivation: Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database.

Main Types of Variables Included: The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised …

Future-Oriented Coastal Protection: The Utility Of Living Shorelines Under Changing Climatic Conditions, Gabriella R. Dipetto, Donna Marie Bilkovic, Taylor M. Sloey, Erik S. Yando, Erik L. Walters

Biological Sciences Faculty Publications

An accumulation of novel nature-based shoreline management techniques have developed over the past two decades out of the continued need to protect waterfront land combined with an awareness of the relationship between healthy coastal ecosystems and human societies. Shoreline protection strategies such as living shorelines incorporate these nature-based approaches to simultaneously enhance ecosystem functioning while providing shoreline stabilization benefits. The continued role of these approaches into the future, however, will be challenged by a rapidly changing coastal environment. While living shorelines have received global attention and integration into climate policy and governance frameworks, the ability of shoreline systems to withstand …

Multifunctional Nanoscale Pigments: Emerging Risks And Circular Strategies For A Sustainable Future, Ajay Vikram Singh, Preeti Bhardwaj, Vimal Kishore, Sunil Choudhary, Akihiko Hirose, Neha Gupta, Madleen Busse, Swarn Lata Singh, Christopher J. Osgood

Biological Sciences Faculty Publications

The substantial penetration of nanoscale pigments into a range of sectors has changed the dynamics of industries such as medical, material science, and many more. Nonetheless, their persistence in the environment and probable adverse impacts on health require that an assessment of such risks be formulated considering the One Health perspective. This viewpoint considers the crossing of boundaries of progress in the nanotechnology of nanoscale pigments with environmental, animal, and human health and emphasizes the significance of collaborative activity. Traditional perspectives explain the distribution of pigment history, while the nanotechnology of today's accessibility poses problems regarding utilization, toxicities, and interactions …

Symbiodiniaceae Shifts Over The Last Decade On The Hottest Coral Reefs On Earth, Anna Fiesinger, Rachel Alderdice, Luigi Colin, Hannah Manns, Gabriela Perna, Kathryn H. Stankiewicz, Jacob J. Valenzuela, Line K. Bay, Daniel J. Barshis, Nitin S. Baliga, Iliana B. Baums, John A. Burt, Christian R. Voolstra

Biological Sciences Faculty Publications

Corals in the Persian/Arabian Gulf (PAG) are resilient to various stressors, whose levels exceed those of coral reefs globally. These corals thereby offer insight into mechanisms underlying thermal resilience, e.g., regarding the role of endosymbiotic microalgae in the family Symbiodiniaceae. Previous studies have identified the thermotolerant species Cladocopium thermophilum as broadly associated with corals in the southern PAG. However, algal-host specificity at the within-species level and the temporal stability of these associations are not well understood. Here we sampled two dominant stony corals (Porites harrisoni, n = 119 and Platygyra daedalea, n = 79) at three sites …

Summer Temperature Maxima Already Challenge Thermal Capacities Of Coral In The Southern Persian/Arabian Gulf, Rachel Alderdice, Gabriela Perna, Hannah Manns, Anna Fiesinger, Luigi Colin, Kathryn Stankiewicz, Kelly Gomez-Campo, Samantha Goyen, Line Bayse, Nitin Baliga, Jake Valenzuela, Iliana B. Baums, Daniel J. Barshis, John A. Burt, Christian R. Voolstra

Biological Sciences Faculty Publications

The future of coral reefs remains uncertain as intensifying ocean warming continues to drive coral decline and demise worldwide. Corals occurring in extreme environments such as the Persian/Arabian Gulf (PAG), the world’s warmest sea, represent a promising resource to study the genetic architecture of thermal tolerance. However, their thermal capacities remain unresolved. We applied short-term heat stress assays using the Coral Bleaching Automated Stress System (CBASS) to determine signatures of thermal tolerance from three common species (Porites harrisoni, Platygyra daedalea, and Cyphastrea microphthalma) across three sites (two in the extreme southern PAG and a more benign …

Carbon Dynamics Across The Mangrove-Tidal Flat Ecotone In A Tropical Seascape, E. S. Yando, I. J.B. Alemu, L. Kiah Eng, T. M. Sloey, M. Van Breugel, Bhatia N. Friess

Biological Sciences Faculty Publications

Mangroves and other blue carbon ecosystems are important for climate through the storage and sequestration of carbon. Most research estimates carbon dynamics by subsampling central portions of the ecosystem and are then upscales using habitat maps to patch, landscape, or regional levels. However, heterogeneity is rarely accounted for - particularly at edges. Further, adjacent tidal flat ecosystems have only recently been considered for carbon storage, but may be undervalued if areas where they transition with vegetated systems are not accounted for. To address the lack of information at coastal ecotones, we examined both soil carbon storage and carbon dioxide flux …

Team Science In Interdisciplinary Health Professions Education Research: A Multi-Institutional Case Study, Peggy Gesing, Joni Tornwall, Violet Kulo, Sarah Mcbrien, Thuha Hoang, Hyun-Jin Jun, Amanda Burbage, Yuane Jia, Christina Cestone

EVMS School of Health Professions Faculty Publications

The interdisciplinary nature of health professions education requires exploration of problems by interdisciplinary research teams. Drawing on the Dynamics of Cross-disciplinary Research Development conceptual framework, this study explores the processes and experiences of an interdisciplinary research team, identifying elements of successful collaboration. Case study data were collected from a team of nine researchers from six universities. Data included meeting minutes and researcher reflections. Researcher reflection and meeting minute themes converged within the framework constructs: Contexts and inputs, social learning processes, social capital outcomes, and knowledge and human capital outcomes. This study provides a blueprint for interdisciplinary researchers indicating that successful …

Association Between Adverse Pregnancy Outcomes And Awareness Of Cardiovascular Risk Factors: A Numom2b-Hhs Secondary Analysis, Elizabeth M. Wendl, Amanda A. Allshouse, Ashley Goodwin, Bri Hobbs, Philip Greenland, Lisa Levine, William Grobman, George R. Saade, Natalie Cameron, C. Noel Bairey Merz, Caroline Rouse, Sarah Rogan, Judith H. Chung, Lauren H. Theilen, National Heart, Lung, And Blood Institute Numom2b Heart Health Study Network

Department of Obstetrics & Gynecology Faculty Publications

Background

Adverse pregnancy outcomes (APOs) affect 10%-20% of pregnancies and are associated with increased risk of cardiovascular disease.

Objective

To determine whether the history of APO is associated with a person's awareness of their cardiovascular risk factors (CRF) 2-7 years postpartum.

Methods

This is a secondary analysis of a multicenter cohort study in which nulliparous pregnant people were enrolled in the first trimester and followed prospectively. Participants with a CRF (hypertension, dyslipidemia, and/or prediabetes/diabetes) at follow-up were included. We excluded participants with: pre-gestational diabetes, chronic hypertension, dyslipidemia during the index pregnancy or subsequent pregnancy, and non-fasting blood draws. The exposure …

Secure Federated Learning Via Neural Cryptography With Homomorphic Operations, Espen Sele, Ferhat Ozgur Catak, Jungwon Seo, Murat Kuzlu

Engineering Technology Faculty Publications

This study examines neural cryptography with homomorphic operations as an alternative secure aggregation method for federated learning (FL). It proposes a novel neural cryptographic system supporting homomorphic addition on fixed-point encrypted data, and consisting of three networks, namely (1) an encryption network (Alice), (2) a homomorphic network (HO), and (3) a decryption network (Bob), along with an adversarial Eve network. Using the MNIST dataset, the proposed Neural Homomorphic Operation System (NHOS) is evaluated against a plaintext baseline and the CKKS scheme, a widely used public-key homomorphic encryption method. The results show that the proposed NHOS approach offers a satisfying performance, …

Advancing Sustainability In Civil Engineering Technology Through The Engineering For One Planet Framework, Dalya Ismael, Vukica M. Jovanovic, Murat Kuzlu, Charles Lowe, Lisa Bosman

Engineering Technology Faculty Publications

As global environmental challenges intensify, integrating sustainability into engineering technology education is increasingly critical. Yet, many programs lack comprehensive methods to embed sustainability principles, leaving graduates underprepared to address real-world environmental issues. Courses on sustainability often approach it in isolated or superficial contexts, unable to capture its complexity. The purpose of this study is to showcase one approach for embedding the Engineering for One Planet (EOP) framework into the Sustainable Building Practices course within the Civil Engineering Technology Department. The newly developed curriculum integrated learning outcomes from three EOP topics: Environmental Impact Assessment, Materials Selection, and Systems Thinking. Students were …

Impacts Of Ramadan Fasting During Pregnancy On Pregnancy And Birth Outcomes: An Umbrella Review, Abdullah Al-Taiar, Md Estiar Rahman, May Salama, Ali H. Ziyab, Wilfried Karmaus

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background

Despite a large number of primary research studies, and systematic and narrative reviews, there is no consensus on the impact of fasting during Ramadan while pregnant on pregnancy and birth outcomes. Currently, there is no evidence-based guideline for Muslim women regarding Ramadan fasting during pregnancy and clinicians cannot provide firm recommendations.

Objectives

To review the current evidence regarding the impact of Ramadan fasting during pregnancy on pregnancy and birth outcomes.

Search Strategy

We conducted an umbrella review of all systematic and narrative reviews examining the impacts of fasting during Ramadan while pregnant on pregnancy and birth outcomes by searching …

Frailty And Sleep In Adult Survivors Of Childhood Cancer: A Childhood Cancer Survivor Study Report, Lauren C. Daniel, Margaret M. Lubas, Huiqi Wang, Mariana Szklo-Coxe, Kirsten K. Ness, Annalynn M. Williams, Daniel A. Mulrooney, Rebecca Howell, Wendy Leisenring, Yutaka Yasui, Leslie L. Robinson, Gregory T. Armstrong, Eric J. Chow, Kevin R. Krull, Tara M. Brinkman

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background

Young adult survivors of childhood cancer exhibit rates of frailty similar to adults several decades older without a cancer history. Frailty has been associated with sleep disturbances in non-cancer populations, but the relationship has not been examined in childhood cancer survivors who are known to exhibit elevated rates of sleep problems.

Aims

Examine associations between frailty and poor sleep quality in long-term survivors of childhood cancer.

Methods

This study utilized data from 9044 participants (> 5 years from diagnosis, M(age) = 40.8 years [SD = 9.5]) in the Childhood Cancer Survivor Study. Survivors' frailty status, chronic health conditions (CHC), …

Anemia In Pregnant Women: Findings From Kuwait Birth Cohort Study, Abdullah Al-Taiar, Ali H. Ziyab, Majeda S. Hammoud, Reem Al-Sabah, Saeed Akhtar

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background Anemia is the most common hematologic disorder in pregnancy, affecting over one-third of pregnant women globally. This study aimed to assess the prevalence of anemia in pregnant women and its associated factors in the Kuwait Birth Cohort study.

Methods The Kuwait birth cohort (n = 1,108) was a prospective study in which pregnant women were recruited during their second or third trimester. Data were collected through personal interviews during antenatal care visits, including data on sociodemographic and lifestyle factors. Blood samples were analyzed under strict quality control to measure various laboratory indicators. Anemia was defined as hemoglobin (Hb) < 110 g/L. Predictors of anemia were categorized as underlying or direct factors, and logistic regression models were used to investigate their association with anemia.

Results …

Modeling Non-Normal Distributions With Mixed Third-Order Polynomials Of Standard Normal And Logistic Variables, Mohan D. Pant, Aditya Chakraborty, Ismail El Moudden

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Continuous data associated with many real-world events often exhibit non-normal characteristics, which contribute to the difficulty of accurately modeling such data with statistical procedures that rely on normality assumptions. Traditional statistical procedures often fail to accurately model non-normal distributions that are often observed in real-world data. This paper introduces a novel modeling approach using mixed third-order polynomials, which significantly enhances accuracy and flexibility in statistical modeling. The main objective of this study is divided into three parts: The first part is to introduce two new non-normal probability distributions by mixing standard normal and logistic variables using a piecewise function of …

Machine Learning Models For Pancreatic Cancer Survival Prediction: A Multi-Model Analysis Across Stages And Treatments Using The Surveillance, Epidemiology, And End Results (Seer) Database, Aditya Chakraborty, Mohan D. Pant

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background: Pancreatic cancer is among the most lethal malignancies, with poor prognosis and limited survival despite treatment advances. Accurate survival modeling is critical for prognostication and clinical decision-making. This study had three primary aims: (1) to determine the best-fitting survival distribution among patients diagnosed and deceased from pancreatic cancer across stages and treatment types; (2) to construct and compare predictive risk classification models; and (3) to evaluate survival probabilities using parametric, semi-parametric, non-parametric, machine learning, and deep learning methods for Stage IV patients receiving both chemotherapy and radiation. Methods: Using data from the SEER database, parametric models (Generalized Extreme Value, …

A Modern Optimization Approach With Data-Driven Analytical Modeling For The Healthcare Business Segment (Hbs) From The S&P 500, Aditya Chakraborty, Chris Tsokos

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Introduction: The S&P consists of eleven business segments, which are classified according to the type of industry. The current study focuses on developing a non-linear analytical model for the Healthcare Business Segment (HBS) of the S&P 500, as a function of different economic & financial indicators. Materials and Methods: The analytical model used six financial indicators together with four economic indicators to predict the weekly average closing price (WCP) of HBS stocks. Johnson’s SB transformation corrected skewness, while desirability-based optimization identified indicator values maximizing WCP. The model’s performance and generalizability were validated through repeated 10-fold cross-validation. Results: All attributable contributors …

Psychometric Validation Of Eq-5d-5l In Individuals With Chronic Spinal Cord Injury In China, Haixia Xie, Qi Zhang, Rong Jin, Jianhui He, Xinxing Hu, Yixuan Zhang, Xiaoping Shao, Xiaohong Li, Hua Zhai, Fengshui Chang

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Objectives

The EQ-5D is a brief measure for assessing health-related quality of life (HRQoL), but chronic spinal cord injury (CSCI) related psychometric evaluation of the EQ-5D-5L has not been explored. We conducted a validation study on the Chinese version of the EQ-5D-5L for individuals with CSCI in China.

Methods

A cross-sectional study was conducted in the Shanghai Sunshine Rehabilitation Center. The floor and ceiling effects, internal consistency, test and retest reliability, discriminatory power (only for EQ-5D-5L), convergent validity (using Spearman correlation coefficients), and known-group validity of the EQ-5D-5L and visual analog scale (VAS) were analyzed.

Results

A total of 271 …

Global, Regional, And National Burden Of Cardiovascular Diseases And Risk Factors In 204 Countries And Territories, 1990-2023, Global Burden Of Cardiovascular Diseases And Risks 2023 Collaborators, Benjamin A. Stark, Nicole K. Decleene, Emily C. Desai, Johnathan M. Hsu, Catherine O. Johnson, Laura Lara-Castor, Kate E. Legrand, Prof Bhoomadevi A., Mohammad Amin Aalipour, Nasir Abbas, Madineh Abbasi, Mohammadreza Abbasian, Hedayat Abbastabar, Abdallah H. A. Abd Al Magied, Samar Abd Elhafeez, Gregory A. Roth, Et Al.

Epidemiology, Biostatistics, & Environmental Health Faculty Publications

Background

Cardiovascular diseases (CVDs) are the leading cause of mortality and are among the foremost causes of disability globally. CVD burden has continued to increase in most countries since 1990, with trends driven by changing exposures to harmful risk factors, population growth, and population aging.

Objectives

We report estimates of global, national, and subnational CVD burden, including 18 subdiseases and 12 associated modifiable risk factors. We analyzed change in CVD burden from 1990 to 2023 and identified drivers of change including population growth, population aging, and risk factor exposure.

Methods

The Global Burden of Disease (GBD) 2023 study, a multinational …

An Integrated Machine Learning Approach For Identifying Emergency Rescue Messages On Social Media During Natural Disasters, Wael Khallouli, Jiang Li, Jingwei Huang, Ghaith Rabadi, Samuel Kovacic

School of Cybersecurity Faculty Publications

During large-scale disasters, emergency call centers are often overwhelmed by the large volume of rescue requests and calls for help. Consequently, people are turning to social media platforms to seek assistance. Rescue information posted on these platforms is extremely valuable for first responders to make informed rescue decisions. Therefore, the automatic identification of these requests from the vast amount of data posted on social media during crises is critical yet challenging. This work presents our ongoing research on applying deep learning techniques to extract actionable rescue information from social media during crises. We proposed a novel deep learning model that …