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Synthesis And Biological Evaluation Of Phaeosphaeride A Derivatives As Antitumor Agents, Victoria Abzianidze, Petr Beltyukov, Sofya Zakharenkova, Natalia Moiseeva, Jennifer Mejia, Alvin Holder, Yuri Trishin, Alexander Berestetskiy, Victor Kuznetsov

Chemistry & Biochemistry Faculty Publications

New derivatives of phaeosphaeride A (PPA) were synthesized and characterized. Anti-tumor activity studies were carried out on the HCT-116, PC3, MCF-7, A549, К562, NCI-Н929, Jurkat, THP-1, RPMI8228 tumor cell lines, and on the HEF cell line. All of the compounds synthesized were found to have better efficacy than PPA towards the tumor cell lines mentioned. Compound 6 was potent against six cancer cell lines, HCT-116, PC-3, K562, NCI-H929, Jurkat, and RPMI8226, showing a 47, 13.5, 16, 4, 1.5, and 7-fold increase in anticancer activity comparative to those of etoposide, respectively. Compound 1 possessed selectivity toward the NCI-H929 cell line (IC …

Carnivorous Pitcher Plants Eat A Diet Of Certain Spiders, Regardless Of What's On The Menu, Marc A. Milne, Deborah A. Waller

Biological Sciences Faculty Publications

The purple pitcher plant, Sarracenia purpurea, is a low-lying carnivorous plant that uses pitcher-shaped leaves to catch arthropod prey for nutrition. Spiders make up a significant portion of these prey. To determine the tendency of specific spider taxa to be captured by the plant, we compared the composition (by taxonomic family) of three spider assemblages: those captured by the plant, those residing on or over the plant, and those found nearby in the local environment. Although there were some broad similarities within the three spider assemblages, significant differences existed when specific families and guilds were considered. While some families …

Open Science, Rusty Speidel

Open Access Week

Rusty Speidel from the Center for Open Science (COS) will provide an overview of COS activities which address ways to make research more open, transparent, and reproducible.

Engineering With Nature And Use Of Natural And Nature-Based Features To Reduce Risk And Provide Enhanced Coastal Protection, Georganna Collins

October 19, 2018: Resilience and Environmental Quality

No abstract provided.

No2- And No3- Enhance Cold Atmospheric Plasma Induced Cancer Cell Death By Generation Of Onoo-, Dehui Xu, Qingjie Cui, Yujing Xu, Zhijie Liu, Zeyu Chen, Wenjie Xia, Hao Zhang, Dingxin Liu, Hailan Chen, Michael G. Kong

Bioelectrics Publications

Cold atmospheric plasma (CAP) is a rapidly developed technology that has been widely applied in biomedicine especially in cancer treatment. Due to the generation of various active species in plasma, CAP could induce various tumor cells death and showed a promising potential in cancer therapy. To enhance the biological effects of gas plasma, changing the discharging parameters is the most commonly used method, yet increasing discharging power will lead to a higher possibility of simultaneously damage surrounding tissues. In this study, by adding nontoxic concentration of additional nitrite and nitrate in the medium, we found that anti-tumor effect of CAP …

Consistent And Reproducible Cultures Of Large-Scale 3d Mammary Epithelial Structures Using An Accessible Bioprinting Platform, John A. Reid, Peter M. Mollica, Robert D. Bruno, Patrick C. Sachs

School of Medical Diagnostics & Translational Sciences Publications

Background: Standard three-dimensional (3D) in vitro culture techniques, such as those used for mammary epithelial cells, rely on random distribution of cells within hydrogels. Although these systems offer advantages over traditional 2D models, limitations persist owing to the lack of control over cellular placement within the hydrogel. This results in experimental inconsistencies and random organoid morphology. Robust, high-throughput experimentation requires greater standardization of 3D epithelial culture techniques.

Methods: Here, we detail the use of a 3D bioprinting platform as an investigative tool to control the 3D formation of organoids through the "self-assembly" of human mammary epithelial cells. Experimental bioprinting procedures …

Decision Making In The Sciences: Understanding Heuristic Use By Students In Problem Solving, Elizabeth Csikar

STEMPS Theses & Dissertations

The purpose of this study was to examine the use of heuristics by students and gain insight into the thought process behind their problem-solving skills. The study used an adaptive narrative as the information delivery medium. An adaptive narrative was chosen because it could be designed to simulate decision making processes encountered in real world situations. Students enrolled in an introductory biology major class were chosen for the study because their fields of interest all require complex problem solving and decision-making skills. It was of interest to investigate what decisions were made when heuristics were given and how that may …

Macrophages But Not Astrocytes Harbor Hiv Dna In The Brains Of Hiv-1-Infected Aviremic Individuals On Suppressive Antiretroviral Therapy, Allen Ko, Guobin Kang, Julian B. Hattler, Hadiza I. Galadima, Junfeng Zhang, Qingsheng Li, Woong-Ki Kim

Community & Environmental Health Faculty Publications

The question of whether the human brain is an anatomical site of persistent HIV-1 infection during suppressive antiretroviral therapy (ART) is critical, but remains unanswered. The presence of virus in the brains of HIV patients whose viral load is effectively suppressed would demonstrate not only the potential for CNS to act as an anatomical HIV reservoir, but also the urgent need to understand the factors contributing to persistent HIV behind the blood-brain barrier. Here, we investigated for the first time the presence of cells harboring HIV DNA and RNA in the brains from subjects with undetectable plasma viral load and …

Moderate Heat Application Enhances The Efficacy Of Nanosecond Pulse Stimulation For The Treatment Of Squamous Cell Carcinoma, Chelsea M. Edelblute, Sigi Guo, Embo Yang, Chunqi Jiang, Karl Schoenbach, Richard Heller

Bioelectrics Publications

Nanosecond pulse stimulation as a tumor ablation therapy has been studied for the treatment of various carcinomas in animal models and has shown a significant survival benefit. In the current study, we found that moderate heating at 43°C for 2 minutes significantly enhanced in vitro nanosecond pulse stimulation-induced cell death of KLN205 murine squamous cell carcinoma cells by 2.43-fold at 600 V and by 2.32-fold at 900 V, as evidenced by propidium iodide uptake. Furthermore, the ablation zone in KLN205 cells placed in a 3-dimensional cell-culture model and pulsed at a voltage of 900 V at 43°C was 3 times …

Accurate Flexible Refinement Of Atomic Models Against Medium-Resolution Cryo-Em Maps Using Damped Dynamics, Julio A. Kovacs, Vitold E. Galkin, Willy Wriggers

Mechanical & Aerospace Engineering Faculty Publications

Background: Dramatic progress has recently been made in cryo-electron microscopy technologies, which now make possible the reconstruction of a growing number of biomolecular structures to near-atomic resolution. However, the need persists for fitting and refinement approaches that address those cases that require modeling assistance.

Methods: In this paper, we describe algorithms to optimize the performance of such medium-resolution refinement methods. These algorithms aim to automatically optimize the parameters that define the density shape of the flexibly fitted model, as well as the time-dependent damper cutoff distance. Atomic distance constraints can be prescribed for cases where extra containment of parts of …

Genetic Patterns In Peripheral Marine Populations Of The Fusilier Fish Caesio Cuning Within The Kuroshio Current, Amanda S. Ackiss, Christopher E. Bird, Yuichi Akita, Mudjekeewis D. Santos, Katsunori Tachihara, Kent E. Carpenter

Biological Sciences Faculty Publications

Aim: Mayr’s central‐peripheral population model (CCPM) describes the marked differences between central and peripheral populations in genetic diversity, gene flow, and census size. When isolation leads to genetic divergence, these peripheral populations have high evolutionary value and can influence biogeographic patterns. In tropical marine species with pelagic larvae, powerful western‐boundary currents have great potential to shape the genetic characteristics of peripheral populations at latitudinal extremes. We tested for the genetic patterns expected by the CCPM in peripheral populations that are located within the Kuroshio Current for the Indo‐Pacific reef fish, Caesio cuning.

Methods: We used a panel of 2,677 …

Dermal Mycobacteriosis And Warming Sea Surface Temperatures Are Associated With Elevated Mortality Of Striped Bass In Chesapeake Bay, Maya L. Groner, John M. Hoenig, Roger Pradel, Rémi Choquet, Wolfgang K. Vogelbein, David T. Gauthier, Marjorie A. M. Friedrichs

Biological Sciences Faculty Publications

Temperature is hypothesized to alter disease dynamics, particularly when species are living at or near their thermal limits. When disease occurs in marine systems, this can go undetected, particularly if the disease is chronic and progresses slowly. As a result, population-level impacts of diseases can be grossly underestimated. Complex migratory patterns, stochasticity in recruitment, and data and knowledge gaps can hinder collection and analysis of data on marine diseases. New tools enabling quantification of disease impacts in marine environments include coupled biogeochemical hydrodynamic models (to hindcast key environmental data), and multievent, multistate mark-recapture (MMSMR) (to quantify the effects of environmental …

Biology Researcher Publishes Study On Saving Marine Organisms From Ocean Acidification, Noell Saunders

News Items

No abstract provided.

Cardiac Autonomic Neuropathy In Diabetes: A Predictor Of Cardiometabolic Events, Aaron I. Vinik, Carolina Casellini, Henri K. Parson, Sheri R. Colberg, Marie-Laure Nevoret

Human Movement Studies & Special Education Faculty Publications

Autonomic nervous system (ANS) imbalance manifesting as cardiac autonomic neuropathy in the diabetic population is an important predictor of cardiovascular events. Symptoms and signs of ANS dysfunction, such as resting heart rate elevations, diminished blood pressure responses to standing, and altered time and frequency domain measures of heart rate variability in response to deep breathing, standing, and the Valsalva maneuver, should be elicited from all patients with diabetes and prediabetes. With the recognition of the presence of ANS imbalance or for its prevention, a rigorous regime should be implemented with lifestyle modification, physical activity, and cautious use of medications that …

Antimicrobial Efficacy And Safety Of A Novel Gas Plasma-Activated Catheter Lock Solution, Sudhir Bhatt, Poonam Mehta, Chen Chen, Dayle A. Daines, Leonard A. Mermel, Hai-Lan Chen, Michael G. Kong

Bioelectrics Publications

Antimicrobial lock solutions are important for prevention of microbial colonization and infection of long-term central venous catheters. We investigated the efficacy and safety of a novel antibiotic-free lock solution formed from gas plasma-activated disinfectant (PAD). Using a luminal biofilm model, viable cells of methicillin-resistant Staphylococcus aureus, Staphylococcus epidermidis, Pseudomonas aeruginosa, and Candida albicans in mature biofilms were reduced by 6 to 8 orders of magnitude with a PAD lock for 60 min. Subsequent 24-h incubation of PAD-treated samples resulted in no detectable regrowth of viable bacteria or fungi. As a comparison, the use of a minocycline-EDTA-ethanol lock solution for 60 …

Editorial For The Special Issue On Micro/Nano-Chip Electrokinetics, Volume Ii, Xiangchun Xuan, Shizhi Qian

Mechanical & Aerospace Engineering Faculty Publications

There has been a rapidly increasing interest in the use of micro/nanofluidics to develop various point-of-care technologies for global health [1,2]. Electrokinetics is often the method of choice in these micro/nano-chips for an accurate transport and manipulation of fluids and samples [3,4]. This special issue in Micromachines is the continuation of our successful first volume on Micro/Nano-Chip Electrokinetics [5]. It consists of 22 contributions, which cover multiple aspects of electrokinetics related phenomena for various chemical and biological applications. We divide these papers into three primary categories and summarize them briefly below.

Career Pathways Program Annual Report, 2017-2018, Wie Yusuf, Chris Osgood

Career Pathways

Career Pathways launched in August 2017 as the university-wide initiative to provide graduate student professional development. It encompasses both the Preparing Future Faculty program and the Preparing Future Professionals program. Preparing Future Faculty was an existing program, started in 2007, while Preparing Future Professionals was launched concurrently with Career Pathways. The Career Pathways program prepares graduate students for successful transition into thriving careers. Career Pathways is a gateway to resources, programs, events, and planning tools for ODU graduate students and postdocs.

Circulation, Vol. 23, No. 3, Center For Coastal Physical Oceanography, Old Dominion University, Eileen Hofmann

CCPO Circulation

Summer 2018 issue of CCPO Circulation featuring article "A Look to the Future - Development of Numerical Ocean Modeling Capacity" by Eileen Hofmann.

The Effects Of Teacher Coaching In The Lincing Routine On The Vocabulary Knowledge Of Secondary Students With Disabilities, Dana W. Cho

Communication Disorders & Special Education Theses & Dissertations

A pretest-posttest time series design controlling for teacher coaching was used to evaluate the effects of the LINCing Routine to support secondary students with disabilities while increasing students’ vocabulary knowledge. Two special education teachers and 26 secondary students with disabilities participated in this study. Student performance was investigated in terms of increased accurate use of the LINCing Routine and overall improvement of vocabulary knowledge while controlling for teacher coaching. The dependent variable increased and remained stable throughout intervention. Pretest and posttest results were also favorable. Students reported average social validity while teachers reported high social validity for the intervention. The …

An Exploration Of Practicum Students' Experiences Of Meaning-Making Through Altruism, Debra Paige Lewis

Counseling & Human Services Theses & Dissertations

Finding meaning in one’s work as a counselor has been demonstrated as an important step in the development of altruism, an essential component of counselor effectiveness. Previous studies in counselor education-related research involving program outcomes focus on the core skills of counseling such as knowledge, skill building, self-appraisal and self-efficacy. Yet little investigation has concentrated on the internal rewards of the clinical experience, such as the meaning found in or the altruism development derived specifically from the practicum or internship. This dissertation research took a phenomenological approach to explore the meaning-making and altruism development of counselor education practicum students providing …

Solid Oxide Electrochemical Cells For High Temperature Hydrogen Production: Theory, Fabrication And Characterization, Can Zhou

Mechanical & Aerospace Engineering Theses & Dissertations

In this dissertation, the concept of water splitting using solid oxide photoelectrochemical cells (SOPCs) at high temperature was introduced and experimentally investigated. High temperature photoelectrochemical water splitting physically broadens the selection of potential applicable semiconductor materials and enables more visible sunlight absorption. This newly conceived concept provides a unique pathway for solar hydrogen production, as compared to conventional photoelectrochemical cells (PECs) that use wide band gap semiconductors in aqueous environments. The theoretical framework of SOPC was elaborated, followed by the experimental investigation to search for appropriate high temperature materials. Selected high temperature Schottky and p-n junction diodes, which were expected …

Epigenetic Alterations Mediate Ipsc Normalization Of Dna-Repair Expression And Tnr Stability In Huntington's Disease, Peter A. Mollica, Martina Zamponi, John Reid, Deepak Sharma, Alyson E. White, Roy C. Ogle, Robert D. Bruno, Patrick C. Sachs

School of Medical Diagnostics & Translational Sciences Publications

Huntington's disease (HD) is a rare autosomal dominant neurodegenerative disorder caused by a cytosine-adenine-guanine (CAG) trinucleotide repeat (TNR) expansion within the HTT gene. The mechanisms underlying HD-associated cellular dysfunction in pluripotency and neurodevelopment are poorly understood. We had previously identified downregulation of selected DNA repair genes in HD fibroblasts relative to wild-type fibroblasts, as a result of promoter hypermethylation. Here, we tested the hypothesis that hypomethylation during cellular reprogramming to the induced pluripotent stem cell (iPSC) state leads to upregulation of DNA repair genes and stabilization of TNRs in HD cells. We sought to determine how the HD TNR region …

Arthropod Transcriptional Activator Protein-1 (Ap-1) Aids Tick-Rickettsial Pathogen Survival In The Cold, Supreet Khanal, Vikas Taank, John F. Anderson, Hameeda Sultana, Girish Neelakanta

Biological Sciences Faculty Publications

Ixodes scapularis ticks transmit several pathogens to humans including rickettsial bacterium, Anaplasma phagocytophilum. Here, we report that A. phagocytophilum uses tick transcriptional activator protein-1 (AP-1) as a molecular switch in the regulation of arthropod antifreeze gene, iafgp. RNAi-mediated silencing of ap-1 expression significantly affected iafgp gene expression and A. phagocytophilum burden in ticks upon acquisition from the murine host. Gel shift assays provide evidence that both the bacterium and AP-1 influences iafgp promoter and expression. The luciferase assays revealed that a region of approximately 700 bp upstream of the antifreeze gene is sufficient for AP-1 binding to promote …

Fisheries Bycatch Risk To Marine Megafauna Is Intensified In Lagrangian Coherent Structures, Kylie L. Scales, Elliot L. Hazen, Michael G. Jacox, Frederic Castruccio, Sara M. Maxwell, Rebecca L. Lewison, Steven J. Bograd

Biological Sciences Faculty Publications

Incidental catch of nontarget species (bycatch) is a major barrier to ecological and economic sustainability in marine capture fisheries. Key to mitigating bycatch is an understanding of the habitat requirements of target and nontarget species and the influence of heterogeneity and variability in the dynamic marine environment. While patterns of overlap among marine capture fisheries and habitats of a taxonomically diverse range of marine vertebrates have been reported, a mechanistic understanding of the real-time physical drivers of bycatch events is lacking. Moving from describing patterns toward understanding processes, we apply a Lagrangian analysis to a high-resolution ocean model output to …

Word Counts In Response To Cognitively Demanding Essay Prompts As Reflections Of General Cognitive Ability And Broad Cognitive Abilities, Michael Beaumont Armstrong

Psychology Theses & Dissertations

Natural language processing techniques can be used to analyze text and speech data. These techniques have been applied within many domains to date but have only recently been examined in the domain of personnel assessment. By linking workplace-relevant constructs such as general cognitive ability (GCA) to natural language processing outcomes such as word counts, a foundation for language-based psychological assessment of those abilities can be laid. Over 400 participants were recruited through Amazon Mechanical Turk to write cognitively demanding essays and complete a battery of cognitive tests. Essays were analyzed using Linguistic Inquiry and Word Count (LIWC). Structural equation modeling …

Self-Reported Oral Health Assessment And Attitudes Toward Oral Health For Adults With Cystic Fibrosis, Ahmed Ali Almuntashiri

Dental Hygiene Theses & Dissertations

Purpose: Cystic fibrosis (CF) is a chronic genetic disorder that an individual has at birth. Cystic fibrosis impacts equally all races, gender and becomes worse over time. The aim of this current study was to evaluate oral health status, interaction with the oral health system, and oral health awareness in adults with cystic fibrosis. Methods: A validated survey consisting of 27 questions was distributed online through cystic fibrosis Facebook pages. Individuals with CF who were 18 years old or older, residing in the U.S. and having English as their primary language were asked to respond to the survey. Independent variables …

Race, Rejection Sensitivity, And Identity Centrality Among Young Sexual Minority Women, Denise M. Calhoun

Psychology Theses & Dissertations

This study examined to what extent the centrality of sexual and racial/ethnic identities were associated with rejection sensitivity in young adult sexual minority women. The relationships between sexual identity centrality and current alcohol use, alcohol-related problems, and sexual minority stress outcomes were also examined with race as a potential moderator. African American/Black and Non-Hispanic White sexual minority women 18-25 years old (N = 676) were recruited through online social media platforms, community organizations, and email advertisements. Participants completed an online survey that included measures of three types of rejection sensitivity (interpersonal, race-based, and sexual orientation-based), sexual minority stress, alcohol use …

Zika Modulates Arthropod Histone Methylation In Mosquito Cells, Telvin Lee Harrell

Biological Sciences Theses & Dissertations

Epigenetics is the heritable series of covalent modifications that affect chromatin structure, gene expression, and protein function. Methylation is one such epigenetic modification that involves the addition of chemical modifying entities, such as methyl groups, on nucleic acids or proteins. Recent studies have reported that Zika virus (ZIKV) modulates methylation of human and viral RNA important for its replication in vertebrate cells. However, little is known whether ZIKV exerts methylation in arthropod vectors. In this study, I show that ZIKV modulates S-adenosyl methionine (SAMe) synthase, an enzyme involved in the production of SAMe, and histone methylation for its survival in …

New Methods To Improve Protein Structure Modeling, Maha Abdelrasoul

Computer Science Theses & Dissertations

Proteins are considered the central compound necessary for life, as they play a crucial role in governing several life processes by performing the most essential biological and chemical functions in every living cell. Understanding protein structures and functions will lead to a significant advance in life science and biology. Such knowledge is vital for various fields such as drug development and synthetic biofuels production.

Most proteins have definite shapes that they fold into, which are the most stable state they can adopt. Due to the fact that the protein structure information provides important insight into its functions, many research efforts …

A Stepwise Compression-Relaxation Testing Method For Tissue Characterization And Tumor Detection Via A Two-Dimensional Tactile Sensor, Yichao Yang

Mechanical & Aerospace Engineering Theses & Dissertations

This dissertation presents a stepwise compression-relaxation (SCR) testing method built upon a two-dimensional (2D) tactile sensor for mechanical characterization of soft tissues and tumor detection. The core of the 2D sensor entails one whole polydimethylsiloxane (PDMS) microstructure embedded with a 3×3 sensing-plate/transducer array. A soft sample was compressed by the 2D sensor with a step incremental depth at a ramp speed, and then relaxed for certain hold time. When a soft sample was compressed by the 2D sensor, the sensing-plates translated the sample response at different tissue sites to the sensor deflections, which were registered as resistance changes by the …