Digital Commons Network^™

Modeling Contaminant Transport And Fate And Subsequent Impacts On Ecosystems, Ming Fan

Dissertations

Assessing risks associated with the release of metals into the environment and managing remedial activities requires simulation tools that depict speciation and risk with accurate mechanistic models and well-defined transport parameters. Such tools need to address the following processes: (1) aqueous speciation, (2) distribution mechanisms, (3) transport, and (4) ecological risk. The primary objective of this research is to develop a simulation tool that accounts for these processes. Speciation in the aqueous phase can be assessed with geochemical equilibrium models, such as MINEQL+. Furthermore, metal distribution can be addressed mechanistically. Studies with Pb sorption to amorphous aluminum (HAG), iron (HFO), …

Modeling Usage Of An Online Research Community, Yi Zhang

Dissertations

Although online communities have been thought of as a new way for collaboration across geographic boundaries in the scientific world, they have a problem attracting people to keep visiting. The main purpose of this study is to understand how people behave in such communities, and to build and evaluate tools to stimulate engagement in a research community. These tools were designed based on a research framework of factors that influence online participation and relationship development.

There are two main objectives for people to join an online community, information sharing and interpersonal relationship development, such as friends or colleagues. The tools …

Toxicity Of Manufactured Particulate Materials On Plant Root Growth, Ling Yang

Dissertations

The rapid development of particle technology and the growing use of particulate materials in industries are bringing large amounts of manufactured particles into the environment. Epidemiological studies suggest that fine particles (particles with aerodynamic diameter smaller than 2.5 μm, i.e., PM_2.5) have an association with various adverse health effects in humans. Mass studies have been performed on the toxicity and toxicological mechanisms of airborne particles such as PM_2.5 and PM₁₀, but there are very few investigations which contribute to the knowledge base on biological implications of manufactured particulate materials. Up to now, the published toxicity …

Slimsvm : A Simple Implementation Of Support Vector Machine For Analysis Of Microarray Data, Avik Karmaker

Theses

Support Vector Machine (SVM) is a supervised machine learning technique being widely used in multiple areas of biological analysis including microarray data analysis. SlimSVM has been developed with the intention of replacing OSU SVM as the classification component of GenoIterSVM in order to make it independent of other SVM packages. GenolterSVM, developed by Dr. Marc Ma, is a SVM implementation with an iterative refinement algorithm for improved accuracy of classification of genotype microarray data. SlimSVM is an object-oriented, modular, and easy-to-use implementation written in C++. It supports dot (linear) and polynomial (non-linear) kernels. The program has been tested with artificial …

Singular Value Decomposition Of Analogs Of Gbr 12909, Anna Fiorentino

Theses

Analogs of GBR 12909 are drugs that could potentially be used to treat cocaine addiction. Singular Value Decomposition (SVD) is a multivariate analysis technique used to show relationships between the data and the variables associated with the data. The input data consists of the conformers of each analog (DM324, 728 conformers; TP250, 739 conformers) along with the eight torsional angles (Al, A2, B1-B6). A novel scaling technique was developed to address the problem of data circularity by subtracting the values of the torsional angles of the global energy minimum conformation from those of each conformer.

In SVD the original data …

Njit Highlanders Cross Country 2004 Media Guide, New Jersey Institute Of Technology Athletic Department

Cross Country/Track & Field

No abstract provided.

Njit Highlanders Women's Volleyball 2004 Media Guide, New Jersey Institute Of Technology Athletic Department

Volleyball - Women's

No abstract provided.

New Techniques For Improving Biological Data Quality Through Information Integration, Katherine Grace Herbert

Dissertations

As databases become more pervasive through the biological sciences, various data quality concerns are emerging. Biological databases tend to develop data quality issues regarding data legacy, data uniformity and data duplication. Due to the nature of this data, each of these problems is non-trivial and can cause many problems for the database. For biological data to be corrected and standardized, methods and frameworks must be developed to handle both structural and traditional data.

The BIG-AJAX framework has been developed for solving these problems through both data cleaning and data integration. This framework exploits declarative data cleaning and exploratory data mining …

Non-Parametric Algorithms For Evaluating Gene Expression In Cancer Using Dna Microarray Technology, Virginie Aris

Dissertations

Microarray technology has transformed the field of cancer biology by enabling the simultaneous evaluation of tens of thousands mRNA expression levels in a single experiment. This technology has been applied to medical science in order to find gene expression markers that cluster diseased and normal tissues, genes affected by treatments, and gene network interactions. All methods of microarray data analysis can be summarized as a study of differential gene expression. This study addresses three questions, 1) the roles of selectively expressed genes for the classification of cancer, 2) issues of accounting for both experimental and biological noise, and 3) issues …

Relationship Analysis : Improving The Systems Analysis Process, Joseph Thomas Catanio

Dissertations

A significant aspect of systems analysis involves discovering and representing entities and their inter-relationships. Guidelines exist to identify entities but do not provide a rigorous and comprehensive process to explicitly capture the relationship structure of the problem domain. Whereas, other analysis techniques lightly address the relationship discovery process, Relationship Analysis is the only systematic, domain-independent analysis technique focusing exclusively on a domain's relationship structure.

The quality of design artifacts, such as class diagrams, and development time necessary to generate these artifacts can be improved by first representing the complete relationship structure of the problem domain. The Relationship Analysis Model is …

Characterization Of Ultrathin Gate Dielectrics And Multilayer Charge Injection Barriers, Edwin M. Dons

Dissertations

Since the invention of the first integrated circuit, the semiconductor industry has distinguished itself by a phenomenally rapid pace of improvements in device performance. This trend of ever smaller and faster devices is a result of the ability to exponentially reduce feature sizes of integrated circuits, a trend commonly known as "scaling". A reduction of overall feature sizes requires a simultaneous reduction in the thickness of the gate dielectric, SiO₂, of a MOSFET. Gate oxides in the ultrathin regime (<35 A) feature a large direct tunneling leakage current. The presence of this leakage current requires a reevaluation of standard characterization techniques as well as a reevaluation of the continued usefulness of SiO₂ as the gate dielectric of choice for future applications. On the other hand, a thorough understanding of …

Understanding The Origin Of The Recovery Of Superconductivity In Halogenated Ybco Single Crystal : Atomic Structure Study, Lamine Mohamed Kollakoye Dieng

Dissertations

The recovery of superconductivity in underdoped YBa₂Cu₃O_6+y (YBCO) by exposure to bromine, iodine, chlorine and fluorine is a long-standing problem which has not been clearly resolved. The key question concerns the role of these halogens in the lattice. In order to shed light to this problem, we have performed multiple-edge x-ray absorption fine structure (XAFS) measurements about the Y K, Ba L₃, I L₃, Cu K and Br K-edges at room temperature on brominated (non-brominated) and iodinated (non-iodinated) YBCO single crystals. Our XAFS results at the Br K (brominated) and I …

Performance Evaluation Of Communication Systems With Transmit Diversity, Chunjun Gao

Dissertations

Transmit diversity is a key technique to combat fading with multiple transmit antennae for next-generation wireless communication systems. Space-time block code (STBC) is a main component of this technique. This dissertation consists of four parts: the first three discuss performance evaluation of STBCs in various circumstances, the fourth outlines a novel differential scheme with full transmit diversity.

In the first part, closed-form expressions for the bit error rate (BER) are derived for STBC based on Alamouti's scheme and utilizing M-ary phase shift keying (MPSK) modulation. The analysis is carried out for a slow, flat Rayleigh fading channel with coherent detection …

Efficient Similarity Search In High-Dimensional Data Spaces, Yue Li

Dissertations

Similarity search in high-dimensional data spaces is a popular paradigm for many modern database applications, such as content based image retrieval, time series analysis in financial and marketing databases, and data mining. Objects are represented as high-dimensional points or vectors based on their important features. Object similarity is then measured by the distance between feature vectors and similarity search is implemented via range queries or k-Nearest Neighbor (k-NN) queries.

Implementing k-NN queries via a sequential scan of large tables of feature vectors is computationally expensive. Building multi-dimensional indexes on the feature vectors for k-NN search also tends to be unsatisfactory …

A Discovery And Analysis Of Influencing Factors Of Pair Programming, Kyungsub Steve Choi

Dissertations

The exploration into the underlying psychosocial links of pair programming. a new and unorthodox programming paradigm in which two programmers share one keyboard and monitor during real-time programming sessions, is undertaken. These complex psychosocial relationships, along with cognitive process exchanges, ultimately mold the programming output as well as determine the level of communication, satisfaction. confidence and compatibility. Laying the framework for this research, a through review of traditional and contemporary paradigms with a special focus on their limitations and a list of current software development problems are presented. Next, a detailed summary of pair programming and related agile software paradigms, …

On Ip Over Wdm Burst-Switched Long Haul And Metropolitan Area Networks, Jingxuan Liu

Dissertations

The IP over Wavelength Division Multiplexing (WDM) network is a natural evolution ushered in by the phenomenal advances in networking technologies and technical breakthroughs in optical communications, fueled by the increasing demand in the reduction of operation costs and the network management complexity. The unprecedented bandwidth provisioning capability and the multi-service supportability of the WDM technology, in synergy with the data-oriented internetworking mechanisms, facilitates a common shared infrastructure for the Next Generation Internet (NGJ).

While NGI targets to perform packet processing directly on the optical transport layer, a smooth evolution is critical to success. Intense research has been conducted to …

The Design Of Adjustable Spherical Mechanisms Using Plane-To-Sphere And Sphere-To-Plane Projections, Wen-Tzong Lee

Dissertations

The spherical mechanism is a particular type of spatial mechanism. Due to the orientation of its joint axes and the curvature of its links, the workspaces of spherical mechanisms (whether line segments, closed loops or area regions) are spherical in curvature. This characteristic of spherical mechanisms makes them quite effective and practical in motion path and function generation applications requiring spherical rigid body kinematics.

Although there are design methods available for spherical mechanisms, most of these methods do not consider the design of a single adjustable spherical mechanism. With an adjustable spherical mechanism, the user could for example, relocate the …

Studies Of Disk Arrays Tolerating Two Disk Failures And A Proposal For A Heterogeneous Disk Array, Chunqi Han

Dissertations

There has been an explosion in the amount of generated data in the past decade. Online access to these data is made possible by large disk arrays, especially in the RAID (Redundant Array of Independent Disks) paradigm. According to the RAID level a disk array can tolerate one or more disk failures, so that the storage subsystem can continue operating with disk failure(s). RAID 5 is a single disk failure tolerant array which dedicates the capacity of one disk to parity information. The content on the failed disk can be reconstructed on demand and written onto a spare disk. However, …

Development Of Dynamic Recursive Models For Freeway Travel Time Predictions, Xiaobo Liu

Dissertations

Traffic congestion has been a major problem in metropolitan areas, which is caused by either insufficient roadway capacity or unforesceable incidents. In order to promote the efficiency of the existing roadway networks and mitigate the impact of traffic congestion, the development of a sound prediction model for travel times is desirable.

A comprehensive literature review about existing prediction models was conducted by investigating the advantages, disadvantages, and limitations of each model. Based on the features and properties of previous models, the base models including exponential smoothing model (ESM), moving average model (MAM), and Kalman filtering model (KFM) are developed to …

A Gibbs Sampling Approach To Maximum A Posteriori Time Delay And Amplitude Estimations, Michele Picarelli

Dissertations

Research concerned with underwater propagation in a shallow ocean environment is a growing area of study. In particular, the development of fast and accurate computational methods to estimate environmental parameters and source location is desired. In this work, only select features of the acoustic field are investigated, namely, the time delays and amplitudes of individual paths, the signal-to-noise ratio, and the number of multi-path arrivals. The amplitudes and delays contain pertinent information about the geometry associated with the environment of interest. Estimating the time delays and amplitudes of select paths in a manner that is both accurate and time efficient, …

Multi-Rate Access Schemes And Successive Interference Cancellation For Wireless Multimedia Mc-Cdma Communications, Mizhou Tan

Dissertations

To catch up with the fast changes of the information challenges, providing multimedia services has become a very important requirement for future wireless communications. A proper system, capable of supporting multi-rate transmissions as well as handling high quality of service (QoS) requirements in hostile wireless communication environments, should be sought. Multi-carrier CDMA (MC-CDMA), a combination of multi-carrier modulation (MCM) and direct-sequence CDMA (DS-CDMA), appears to be one of the most elegant solutions. In this dissertation, four multi-rate access schemes, termed uncoded fixed spreading length (UFSL), coded fixed spreading length (CFSL), multi-code fixed spreading length (MFSL) and variable spreading length (VSL), …

An Approximate Search Engine For Structure, Huiyuan Shan

Dissertations

As the size of structural databases grows, the need for efficiently searching these databases arises. Thanks to previous and ongoing research, searching by attribute-value and by text has become commonplace in these databases. However, searching by topological or physical structure, especially for large databases and especially for approximate matches, is still an art.

In this dissertation, efficient search techniques are presented for retrieving trees from a database that are similar to a given query tree. Rooted ordered labeled trees, rooted unordered labeled trees and free trees are considered. Ordered labeled trees are trees in which each node has a label …

Phase Noise Effects On Ofdm : Analysis And Mitigation, Songping Wu

Dissertations

Orthogonal frequency division multiplexing (OFDM) is a promising technique which has high spectrum efficiency and the robustness against channel frequency selectivity. One drawback of OFDM is its sensitivity to phase noise. It has been shown that even small phase noise leads to significant performance loss of OFDM. Therefore, phase noise effects on OFDM systems need to be analyzed and methods be provided to its mitigation.

Motivated by what have been proposed in the literature, the exact signal to interference plus noise ratio (SINR) is derived in this dissertation for arbitrary phase noise levels. In a multiple access environment with multiple …

Ad Hoc Network Security And Modeling With Stochastic Petri Nets, Congzhe Zhang

Dissertations

Advances in wireless technology and portable computing along with demands for high user mobility have provided a major promotion toward the development of ad hoc networks. These networks feature dynamic topology, self-organization, limited bandwidth and battery power of a node. Unlike the existing commercial wireless systems and fixed infrastructure networks, they do not rely on specialized routers for path discovery and traffic routing. Security is an important issue in such networks. Typically, mobile nodes are significantly more susceptible to physical attacks than their wired counterparts.

This research intends to investigate the ad hoc network routing security by proposing a performance …

Uncertainty Analysis In Ecological Risk Assessment Modeling, Tepwitoon Thongsri

Dissertations

A probabilistic approach employing Monte Carlo simulations for assessing parameter and risks as probabilistic distributions was used in an ecological risk assessment (ERA) model to characterize risk and address uncertainty. This study addresses the following sources of uncertainty: parameter inputs in the ERA models, risk algorithms and uncertain input concentrations. To achieve this objective, both sensitivity and uncertainty analyses are being conducted. Monte Carlo simulations were used for generating probabilistic distributions of parameter and model uncertainty. All sensitivity, uncertainty, and variability analyses were coded in Visual Basic as part of the ERA model software version 2001, which was developed under …

Ultra-Wideband Technology For Short-Range Wireless Communication, Li Zhao

Dissertations

The ultra-wideband (UWB) radio core idea is to open large amounts of spectrum to a variety of users with little mutual interference between them. While ultra-wideband is being championed by several commercial companies, this technology has not followed the conventional path where commercial interest is preceded by years of academic research. This work attempts to fill in some of the gap by studying fundamental properties of communications with impulse-based radio UWB signals. We study jam resistance and capacity of UWB. Jam resistance is analyzed for binary pulse position modulation (PPM) with the interference being modeled as correlated Gaussian. Closed-form expressions …

Mixing Enhancement By Dual Speed Rotating Stirrer, Arnaud Goullet

Dissertations

Stirring is a well-known means of fluid mixing due to the emergence of complex patterns in the flow, even at low Reynolds numbers. In this work, we consider a stirrer rotating along a circular trajectory at constant speed. The fluid flow, considered incompressible, inviscid and two dimensional (in a circular container), is modeled by a point vortex model consisting of a vortex rotating in a circular container at constant angular speed. The mixing problem is addressed by considering the Hamiltonian form of the advection equations formulated in a frame of reference moving with the vortex. The dynamics of passive fluid …

Enriching And Designing Metaschemas For The Umls Semantic Network, Li Zhang

Dissertations

The disparate terminologies used by various biomedical applications or professionals make the communication between them more difficult. The Unified Medical Language System (UMLS) of the National Library of Medicine (NLM) is an attempt to integrate different medical terminologies into a unified representation framework to improve decision making and the quality of patient care as well as research in the health-care field. Metathesaurus (META) and Semantic Network (SN) are two main components of the UMLS system, where the SN provides a high-level abstract of the concepts in the META.

This dissertation addresses three problems of the SN. First, the SN's two-tree …

Nonlinear Long-Wave Interfacial Stability Of Two-Layer Gas-Liquid Flow, Tetyana Segin

Dissertations

The flow of two immiscible viscous fluids in a thin inclined channel is considered, in either a cocurrent or countercurrent regime. Following the air-water case, which is found in a variety of engineering systems, we allow the upper fluid to be either compressible or incompressible. The disparity of the length scales and the density and viscosity ratios of the two fluids is exploited through a lubrication approximation of the conservation of mass and the Navier-Stokes equations. As a result of this long-wave theory, a coupled nonlinear system of partial differential equations is obtained that describes the evolution of the interfacial …

Measurement Of The Effectiveness Of Enhanced External Counterpulsation On Heart Rate Variability For Patients With Myocardial Ischemia, Kripa Jayaraman

Theses

This thesis is a study to measure the changes in heart rate variability due to the activity of the autonomic nervous system caused by the Enhanced External Counterpulsation treatment. The treatment is a non surgical, mechanical procedure that can reduce the symptoms of angina or Congestive Heart Failure, presumably by stimulating the opening, or formation of, small branches of blood vessels (collaterals) to create a natural bypass around narrowed or blocked arteries. It has been proved that rhythms can be markers of normal functional states. Even in the absence of external perturbations, the normal heartbeat is not characterized by clockwise …