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Evolution Of Alu Elements In The Saimiri And Papio Lineages Of Primates, Jasmine Nicole Brown Baker

LSU Doctoral Dissertations

Alu elements are approximately 300 base pair (bp) primate specific non- autonomous retrotransposons. Alu elements, a short interspersed element (SINE), account for high copy numbers in all primate genomes. Numerous Alu element subfamilies have undergone varying degrees of activity and amplification within primates. Identification of these subfamilies has proved to be very informative in elucidating phylogenies and as phylogenomic markers. Squirrel monkeys, genus Saimiri, are one of the most well-known neotropical primates and the second most commonly used laboratory monkey. Squirrel monkey species diverged approximately 1.5 million years ago and are native to South America. Despite being well-known, there …

Numerical Experiment Of Sediment Dynamics Over A Dredged Pit On The Louisiana Shelf, Nazanin Chaichitehrani

LSU Doctoral Dissertations

Sediment transport over Sandy Point dredge pit in the northern Gulf of Mexico was examined using field measurements and a finely resolved numerical model. Delft3D model with well-vetted computational grid and input parameters was used. Numerical experiments were performed to examine the effect of wind-generated waves, wind-driven currents and their interaction on sediment dynamics in our study area during a cold front in November 2014 and fair-weather conditions between July and August of 2015. Sediment dispersal from the lower Mississippi River, sediment resuspension, transport and deposition with high spatial and temporal resolution were simulated. A reliable satellite-derived near-surface suspended particulate …

Solution Self-Assemblies Of Sequence-Defined Ionic Peptoid Block Copolymers, Garrett L. Sternhagen, Sudipta Gupta, Yueheng Zhang, Vijay John, Gerald J. Schneider, Donghui Zhang

Faculty Publications

© 2018 American Chemical Society. A series of amphiphilic ionic peptoid block copolymers where the total number (1 or 3) and position of ionic monomers along the polymer chain are precisely controlled have been synthesized by the submonomer method. Upon dissolution in water at pH = 9, the amphiphilic peptoids self-assemble into small spherical micelles having hydrodynamic radius in ∼5-10 nm range and critical micellar concentration (CMC) in the 0.034-0.094 mg/mL range. Small-angle neutron scattering (SANS) analysis of the micellar solutions revealed unprecedented dependence of the micellar structure on the number and position of ionic monomers along the chain. It …

Analysis Of Lineage-Specific Alu Subfamilies In The Genome Of The Olive Baboon, Papio Anubis, Cody J. Steely, Jasmine N. Baker, Jerilyn A. Walker, Charles D. Loupe, Mark A. Batzer, Jeffrey Rogers, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, Tauras P. Vilgalys, Jerilyn A. Walker, Miriam K. Konkel, Vallmer E. Jordan

Faculty Publications

© 2018 The Author(s). Background: Alu elements are primate-specific retroposons that mobilize using the enzymatic machinery of L1 s. The recently completed baboon genome project found that the mobilization rate of Alu elements is higher than in the genome of any other primate studied thus far. However, the Alu subfamily structure present in and specific to baboons had not been examined yet. Results: Here we report 129 Alu subfamilies that are propagating in the genome of the olive baboon, with 127 of these subfamilies being new and specific to the baboon lineage. We analyzed 233 Alu insertions in the genome …

5-Lipoxygenase (5-Lox)-5-Lipoxygenase Activating Protein (Flap)-Nanodisc Complex: A Model For The 5-Lox-Flap Interaction, Erin Elizabeth Schexnaydre

LSU Doctoral Dissertations

Leukotrienes (LT) are lipid mediators of the inflammatory response that play important roles in diseases such as asthma and atherosclerosis. Leukotriene A4 (LTA₄) is synthesized from arachidonic acid (AA) by 5-lipoxygenase (5-LOX) with the help of 5-lipoxygenase activating protein (FLAP), a trimeric nuclear transmembrane protein. Exactly how 5-LOX and FLAP interact is not well understood, however FLAP is essential for the production of leukotrienes in vivo. I used nanodiscs (NDs), engineered membrane systems, as a tool to study the 5-LOX-FLAP interaction. FLAP was incorporated into NDs with a phospholipid composition to mimic of the nuclear membrane. Structural features …

Sediment And Plant Dynamics In A Degrading Coastal Louisiana Landscape, Glenn Michael. Suir

LSU Doctoral Dissertations

Alterations to Louisiana’s river systems and local hydrology have resulted in reduced freshwater, sediment, and nutrient inputs into wetland landscapes, causing significant negative impacts on marsh productivity and stability. To combat these losses many restoration projects have been constructed or planned throughout coastal Louisiana. Typical goals of wetland restoration efforts are to conserve, create, or enhance wetland form, and to achieve wetland function that approaches natural conditions. Failure to adequately maintain wetland elevation and hydrology can have serious implications on sedimentation and vegetation processes, which significantly reduces the likelihood of reaching structural and functional targets. Measures of wetland condition have …

Synthesis And Characterization Of Covalent Adaptable Networks Comprised Of Dynamic Imine And Aminal Covalent Bonds, Albert Chao

LSU Doctoral Dissertations

The dissertation is about the design, synthesis and characterization of materials comprised of covalent adaptable networks (CANs). There are three chapters within this dissertation.

Chapter 1 contains a short overview of conventional thermosets and thermoplastics. A new strategy of combining advantages from thermosets and thermoplastics is utilizing dynamic covalent chemistry (DCC) for material design. Dynamic covalent bonds are able to undergo dynamic exchange which allow the material to adapt to a new state when under stimuli such as stress or strain. Material comprised of such reversible networks is called covalent adaptable networks (CANs). These types of reversible covalent bonds followed …

The Influence Of River Discharge On Fishes And Invertebrates Associated With Small Oil And Gas Platforms In Nearshore Louisiana, David Bradley Reeves

LSU Doctoral Dissertations

The nearshore region off Louisiana’s coast is one of the most productive areas in the United States. Nutrient-rich discharge from the Mississippi and Atchafalaya rivers forms the base of this productivity, but it also contributes to the annual formation of a large hypoxic zone (DO < 2.0 mg l^-1). This region contains >900 oil and gas platforms (platforms) that are de facto artificial reefs and support fish and invertebrate communities. In this dissertation, I examined how select platform-associated fishes and invertebrates responded to river-driven productivity and hypoxia. Settlement plates were used to compare barnacle production at depths of 2 and 7-m along …

Providing Information And Public Outreach Across Three U.S. State Archaeology Offices During The Age Of Open Access, Samuel Thomas Ayers

LSU Master's Theses

Archaeology in the United States has been transformed into a mainstream, practical science over the past fifty years by Cultural Resource Management (CRM) and the federal regulations imposed by the National Historic Preservation Act (NHPA) of 1966. However, this form of archaeology has been plagued with criticisms since the NHPA’s enactment including issues of access and use of data maintained by state site files. State archaeology is publicly funded yet state and federal legislation often exempts CRM data from freedom of information laws. To mitigate this contradiction and stem the growing body of “gray literature”, new open-access (OA) technologies are …

Satellite Estimation Of Coastal Pco2 And Air-Sea Flux Of Carbon Dioxide In The Northern Gulf Of Mexico, S. E. Lohrenz, W. J. Cai, S. Chakraborty, W. J. Huang, X. Guo, R. He, Z. Xue, K. Fennel, S. Howden, H. Tian

Faculty Publications

Satellite approaches for estimation of the partial pressure of CO2 (pCO2) and air-sea flux of CO2 in coastal regions offer the potential to reduce uncertainties in coastal carbon budgets and improve understanding of spatial and temporal patterns and the factors influencing them. We used satellite-derived products in combination with an extensive data set of ship-based observations to develop an unprecedented multi-year time-series of pCO2 and air-sea flux of CO2 in the northern Gulf of Mexico for the period 2006–2010. A regression tree algorithm was used to relate satellite-derived products for chlorophyll, sea surface temperature, and dissolved and detrital organic matter …

Cdk1-Dependent Phosphoinhibition Of A Formin-F-Bar Interaction Opposes Cytokinetic Contractile Ring Formation, Alaina H. Willet, K. Adam Bohnert, Kathleen L. Gould

Faculty Publications

© 2018 Willet et al. In Schizosaccharomyces pombe, cytokinesis requires the assembly and constriction of an actomyosin-based contractile ring (CR). A single essential formin, Cdc12, localizes to the cell middle upon mitotic onset and nucleates the F-actin of the CR. Cdc12 medial recruitment is mediated in part by its direct binding to the F-BAR scaffold Cdc15. Given that Cdc12 is hyperphosphorylated in M phase, we explored whether Cdc12 phosphoregulation impacts its association with Cdc15 during mitosis. We found that Cdk1, a major mitotic kinase, phosphorylates Cdc12 on six N-terminal residues near the Cdc15-binding site, and phosphorylation on these sites inhibits …

Characterizing The Phylogenetic Specialism-Generalism Spectrum Of Mammal Parasites, A. W. Park, M. J. Farrell, J. P. Schmidt, S. Huang, T. A. Dallas, P. Pappalardo, J. M. Drake, P. R. Stephens, R. Poulin, C. L. Nunn, T. J. Davies

Faculty Publications

© 2018 The Author(s) Published by the Royal Society. All rights reserved. The distribution of parasites across mammalian hosts is complex and represents a differential ability or opportunity to infect different host species. Here, we take a macroecological approach to investigate factors influencing why some parasites show a tendency to infect species widely distributed in the host phylogeny (phylogenetic generalism) while others infect only closely related hosts. Using a database on over 1400 parasite species that have been documented to infect up to 69 terrestrialmammal host species,we characterize the phylogenetic generalism of parasites using standard effect sizes for three metrics: …

Public Knowledge Of Monarchs And Support For Butterfly Conservation, Jerrod Penn, Hannah Penn, Wuyang Hu

Faculty Publications

© 2018 by the authors. Pollinator populations in North America are in decline, including the iconic monarch butterfly. In order to determine if public knowledge of monarchs informs opinions on butterfly conservation, we surveyed the public to assess their knowledge of monarchs. We also asked participants about their attitudes towards general butterfly conservation and if they believe that butterfly gardens contribute to conservation. Respondents generally had some knowledge of monarchs but were unaware of monarch population declines and the necessity of milkweed to their life cycle. Respondent knowledge was correlated with more positive attitudes about butterfly conservation. Furthermore, membership in …

The Determinants Of Nucleosome Patterns And The Impact Of Phosphate Starvation On Nucleosome Patterns And Gene Expression In Rice, Qi Zhang

LSU Doctoral Dissertations

In eukaryotic cells, DNA is a large molecule that must be greatly condensed to fit within the nucleus. DNA is wrapped around histone proteins to form nucleosomes, which facilitate DNA condensation, but on the other hand, may limit DNA processes. Organisms must respond to environmental stress in order to survive, and one strategy is by remodeling nucleosomes to promote changes in DNA accessibility to alter gene expression. Studies have demonstrated a clear correlation between nucleosome dynamics and transcriptional change in some eukaryotes, however factors that affect nucleosome positioning in plants are largely unknown, and the correlation between nucleosome dynamics and …

Comparative Assessment Of Strategies To Identify Similar Ligand-Binding Pockets In Proteins, Rajiv Gandhi Govindaraj, Michal Brylinski

Faculty Publications

© 2018 The Author(s). Background: Detecting similar ligand-binding sites in globally unrelated proteins has a wide range of applications in modern drug discovery, including drug repurposing, the prediction of side effects, and drug-target interactions. Although a number of techniques to compare binding pockets have been developed, this problem still poses significant challenges. Results: We evaluate the performance of three algorithms to calculate similarities between ligand-binding sites, APoc, SiteEngine, and G-LoSA. Our assessment considers not only the capabilities to identify similar pockets and to construct accurate local alignments, but also the dependence of these alignments on the sequence order. We point …

Environmentally Persistent Free Radicals: Insights On A New Class Of Pollutants, Eric P. Vejerano, Guiying Rao, Lavrent Khachatryan, Stephania A. Cormier, Slawo Lomnicki

Faculty Publications

© 2018 American Chemical Society. Environmentally persistent free radicals, EPFRs, exist in significant concentration in atmospheric particulate matter (PM). EPFRs are primarily emitted from combustion and thermal processing of organic materials, in which the organic combustion byproducts interact with transition metal-containing particles to form a free radical-particle pollutant. While the existence of persistent free radicals in combustion has been known for over half-a-century, only recently that their presence in environmental matrices and health effects have started significant research, but still in its infancy. Most of the experimental studies conducted to understand the origin and nature of EPFRs have focused primarily …

Jak/Stat3 Regulated Global Gene Expression Dynamics During Late-Stage Reprogramming Process, Ling Wang, Zongliang Jiang, Delun Huang, Jingyue Duan, Chang Huang, Shannon Sullivan, Kaneha Vali, Yexuan Yin, Ming Zhang, Jill Wegrzyn, Xiuchun Cindy Tian, Young Tang

Faculty Publications

© 2018 The Author(s). Background: The generation of induced pluripotent stem cells (iPSCs) has underdefined mechanisms. In addition, leukemia inhibitory factor (LIF) activated Janus kinase/signal transducer and activator of transcription 3 (JAK/STAT3) pathway is the master regulator for naïve-state pluripotency achievement and maintenance. However, the regulatory process to attain naïve pluripotent iPSCs is not well understood. Results: We performed transcriptome analysis to dissect the genomic expression during mouse iPSC induction, with or without blocking the JAK/STAT3 activity. We describe JAK/STAT3 signaling-specific biological events such as gametogenesis, meiotic/mitotic cell cycle, and DNA repair, and JAK/STAT3-dependent expression of key transcription factors such …

The Status Of Safety Culture At Louisiana State University, Jerry Edward Steward

LSU Doctoral Dissertations

This work accesses the nature of and level of safety culture in the academic research community at Louisiana State University and Agricultural and Mechanical College (LSU). After serious chemical related accidents in academic research laboratories the National Academies of Science has made recommendations to improve safety within academic research by encouraging researchers to go beyond simple compliance with regulations and work toward fostering a strong, positive safety culture. The term, “safety culture” is used to describe workplace safety in various efforts to improve it. Researchers have studied these concepts from technical, social, and psychological viewpoints leading to the general consensus …

Legacy Contaminants In The Northern Gulf Of Mexico Shelf, Jessica N. Landry

LSU Master's Theses

The Mississippi River watershed is the third largest in the world and drains from 31 states in the United States. Due to its route through the U.S., it passes through hundreds of EPA labeled Superfund sites as well as agricultural and suburban watersheds. These sites are known to have historical chemical contamination, and as a result chemicals can be transported by runoff down the Mississippi River into the Gulf of Mexico where their ultimate fate is unknown. Organochlorine chemicals are known to be persistent and are found in agricultural land as well as US EPA Superfund sites, especially DDT, PCBs, …

Chemotherapeutic Applications Of Rhodamine Based Nanogumbos, Nimisha Bhattarai

LSU Doctoral Dissertations

The work presented in this dissertation employs nanomaterials derived from a group of uniform materials based on organic salts (GUMBOS) for selective chemotherapeutic applications. GUMBOS, similar to ionic liquids, are organic salts consisting of a bulky cationic and anionic moiety. In contrast to ionic liquids, these materials have melting points ranging from 25–250 °C, making them solid phase at room temperature. Similar to ionic liquids, GUMBOS display tunable properties, such as hydrophobicity and solubility, through counter ion variation. These tunable properties provide a variety of applications for these GUMBOS, including selective chemotherapeutics applications. The …

Community Assembly Of The Ferns Of Florida, Emily B. Sessa, Sally M. Chambers, Daijiang Li, Lauren Trotta, Lorena Endara, J. Gordon Burleigh, Benjamin Baiser

Faculty Publications

© 2018 The Authors. American Journal of Botany is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America. Premise of the Study: Many ecological and evolutionary processes shape the assembly of organisms into local communities from a regional pool of species. We analyzed phylogenetic and functional diversity to understand community assembly of the ferns of Florida at two spatial scales. Methods: We built a phylogeny for 125 of the 141 species of ferns in Florida using five chloroplast markers. We calculated mean pairwise dissimilarity (MPD) and mean nearest taxon distance (MNTD) from phylogenetic distances and functional …

Transcriptomics Reveal Transgenerational Effects In Purple Sea Urchin Embryos: Adult Acclimation To Upwelling Conditions Alters The Response Of Their Progeny To Differential Pco2 Levels, Juliet M. Wong, Kevin M. Johnson, Morgan W. Kelly, Gretchen E Hofmann

Faculty Publications

© 2018 John Wiley & Sons Ltd Understanding the mechanisms with which organisms can respond to a rapidly changing ocean is an important research priority in marine sciences, especially in the light of recent predictions regarding the pace of ocean change in the coming decades. Transgenerational effects, in which the experience of the parental generation can shape the phenotype of their offspring, may serve as such a mechanism. In this study, adult purple sea urchins, Strongylocentrotus purpuratus, were conditioned to regionally and ecologically relevant pCO2 levels and temperatures representative of upwelling (colder temperature and high pCO2) and nonupwelling (average temperature …

Cd Obesity-Prone Rats, But Not Obesity-Resistant Rats, Robustly Ferment Resistant Starch Without Increased Weight Or Fat Accretion, Diana Obanda, Ryan Page, Justin Guice, Anne M. Raggio, Claudia Husseneder, Brian Marx, Rhett W. Stout, David A. Welsh, Christopher M. Taylor, Meng Luo, Eugene E. Blanchard, Zach Bendiks, Diana Coulon, Michael J. Keenan

Faculty Publications

© 2018 The Obesity Society Objective: This study used CD obesity-prone (OP) and obesity-resistant (OR) rats to examine how weight gain and fat accretion relate to fermentation levels and microbiota composition after feeding resistant starch (RS). Methods: After feeding OP rats and OR rats a high-fat (HF) diet for 4 weeks, rats were stratified into three groups: they were fed either an HF diet (group 1: HF-HF) or were switched to a low-fat (LF) diet (group 2: HF-LF) or an LF diet supplemented with 20% RS by weight for 4 weeks (group 3: HF-LFRS). Energy intake, body weight, fermentation variables, …

Cd Obesity-Prone Rats, But Not Obesity-Resistant Rats, Robustly Ferment Resistant Starch Without Increased Weight Or Fat Accretion, Diana Obanda, Ryan Page, Justin Guice, Anne M. Raggio, Claudia Husseneder, Brian Marx, Rhett W. Stout, David A. Welsh, Christopher M. Taylor, Meng Luo, Eugene E. Blanchard, Zach Bendiks, Diana Coulon, Michael J. Keenan

Faculty Publications

© 2018 The Obesity Society Objective: This study used CD obesity-prone (OP) and obesity-resistant (OR) rats to examine how weight gain and fat accretion relate to fermentation levels and microbiota composition after feeding resistant starch (RS). Methods: After feeding OP rats and OR rats a high-fat (HF) diet for 4 weeks, rats were stratified into three groups: they were fed either an HF diet (group 1: HF-HF) or were switched to a low-fat (LF) diet (group 2: HF-LF) or an LF diet supplemented with 20% RS by weight for 4 weeks (group 3: HF-LFRS). Energy intake, body weight, fermentation variables, …

First Impressions—The Potential Of Altering Initial Host-Virus Interactions For Rational Design Of Herpesvirus Vaccine Vectors, Paul J.F. Rider, Farhana Musarrat, Rafiq Nabi, Shan Naidu, Konstantin G. Kousoulas

Faculty Publications

© 2018, Springer International Publishing AG, part of Springer Nature. Purpose of Review: The earliest host-virus interactions occur during virus attachment and entry into cells. These initial steps in the virus lifecycle influence the outcome of infection beyond delivery of the viral genome into the cell. Herpesviruses alter host signaling pathways and processes during attachment and entry to facilitate virus infection and modulate innate immune responses. We suggest in this review that understanding these early events may inform the rational design of therapeutic and prevention strategies for herpesvirus infection, as well as the engineering of viral vectors for immunotherapy purposes. …

Low- And Middle-Income Countries Can Reduce Risks Of Subsequent Neoplasms By Referring Pediatric Craniospinal Cases To Centralized Proton Treatment Centers, Phillip J. Taddei, Nabil Khater, Bassem Youssef, Rebecca M. Howell, Wassim Jalbout, Rui Zhang, Fady B. Geara, Annelise Giebeler, Anita Mahajan, Dragan Mirkovic, Wayne D. Newhauser

Faculty Publications

Few children with cancer in low- and middle-income countries (LMICs) have access to proton therapy. Evidence exists to support replacing photon therapy with proton therapy to reduce the incidence of secondary malignant neoplasms (SMNs) in childhood cancer survivors. The purpose of this study was to estimate the potential reduction in SMN incidence and in SMN mortality for pediatric medulloblastoma (MB) patients in LMICs if proton therapy were made available to them. For nine children of ages 2-14 years, we calculated the equivalent dose in organs or tissues at risk for radiogenic SMNs from therapeutic and stray radiation for photon craniospinal …

Trans-Ethnic Analysis Of Metabochip Data Identifies Two New Loci Associated With Bmi, J. Gong, K. K. Nishimura, L. Fernandez-Rhodes, J. Haessler, S. Bien, M. Graff, U. Lim, Y. Lu, M. Gross, M. Fornage, S. Yoneyama, C. R. Isasi, P. Buzkova, M. Daviglus, D. Y. Lin, R. Tao, R. Goodloe, W. S. Bush, E. Farber-Eger, J. Boston, H. H. Dilks, G. Ehret, C. C. Gu, C. E. Lewis, K. D.H. Nguyen, R. Cooper, M. Leppert, M. R. Irvin, E. P. Bottinger, L. R. Wilkens, C. A. Haiman, L. Park, K. R. Monroe

Faculty Publications

Objective:Body mass index (BMI) is commonly used to assess obesity, which is associated with numerous diseases and negative health outcomes. BMI has been shown to be a heritable, polygenic trait, with close to 100 loci previously identified and replicated in multiple populations. We aim to replicate known BMI loci and identify novel associations in a trans-ethnic study population.Subjects:Using eligible participants from the Population Architecture using Genomics and Epidemiology consortium, we conducted a trans-ethnic meta-analysis of 102 514 African Americans, Hispanics, Asian/Native Hawaiian, Native Americans and European Americans. Participants were genotyped on over 200 000 SNPs on the Illumina Metabochip custom …

A Large-Scale Multi-Ancestry Genome-Wide Study Accounting For Smoking Behavior Identifies Multiple Significant Loci For Blood Pressure, Yun J. Sung, Thomas W. Winkler, Lisa De Las Fuentes, Amy R. Bentley, Michael R. Brown, Aldi T. Kraja, Karen Schwander, Ioanna Ntalla, Xiuqing Guo, Nora Franceschini, Yingchang Lu, Ching Yu Cheng, Xueling Sim, Dina Vojinovic, Jonathan Marten, Solomon K. Musani, Changwei Li, Mary F. Feitosa, Tuomas O. Kilpeläinen, Melissa A. Richard, Raymond Noordam, Stella Aslibekyan, Hugues Aschard, Traci M. Bartz, Rajkumar Dorajoo, Yongmei Liu, Alisa K. Manning, Tuomo Rankinen, Albert Vernon Smith, Salman M. Tajuddin, Bamidele O. Tayo, Helen R. Warren, Wei Zhao

Faculty Publications

Genome-wide association analysis advanced understanding of blood pressure (BP), a major risk factor for vascular conditions such as coronary heart disease and stroke. Accounting for smoking behavior may help identify BP loci and extend our knowledge of its genetic architecture. We performed genome-wide association meta-analyses of systolic and diastolic BP incorporating gene-smoking interactions in 610,091 individuals. Stage 1 analysis examined ∼18.8 million SNPs and small insertion/deletion variants in 129,913 individuals from four ancestries (European, African, Asian, and Hispanic) with follow-up analysis of promising variants in 480,178 additional individuals from five ancestries. We identified 15 loci that were genome-wide significant (p < 5 × 10−8) in stage 1 and formally replicated in stage 2. A combined stage 1 and 2 meta-analysis identified 66 additional genome-wide significant loci (13, 35, and 18 loci in European, African, and trans-ancestry, respectively). A total of 56 known BP loci were also identified by our results (p < 5 × 10−8). Of the newly identified loci, ten showed significant interaction with smoking status, but none of them were replicated in stage 2. Several loci were identified in African ancestry, highlighting the importance of genetic studies in diverse populations. The identified loci show strong evidence for regulatory features and support shared pathophysiology with cardiometabolic and addiction traits. They also highlight a role in BP regulation for biological candidates such as modulators of vascular structure and function (CDKN1B, BCAR1-CFDP1, PXDN, EEA1), ciliopathies (SDCCAG8, RPGRIP1L), telomere maintenance (TNKS, PINX1, AKTIP), and central dopaminergic signaling (MSRA, EBF2).

Impact Of Model Violations On The Inference Of Species Boundaries Under The Multispecies Coalescent, Anthony J. Barley, Jeremy M. Brown, Robert C. Thomson

Faculty Publications

© 2017 The Author(s). The use of genetic data for identifying species-level lineages across the tree of life has received increasing attention in the field of systematics over the past decade. The multispecies coalescent model provides a framework for understanding the process of lineage divergence and has become widely adopted for delimiting species. However, because these studies lack an explicit assessment of model fit, in many cases, the accuracy of the inferred species boundaries are unknown. This is concerning given the large amount of empirical data and theory that highlight the complexity of the speciation process. Here, we seek to …

Pilot Study Of The Tart Cherry Juice For The Treatment Of Insomnia And Investigation Of Mechanisms, Jack N. Losso, John W. Finley, Namrata Karki, Ann G. Liu, Alfredo Prudente, Russell Tipton, Ying Yu, Frank L. Greenway

Faculty Publications

Background: Insomnia is common in the elderly and is associated with chronic disease, but use of hypnotics increases the incidence of falls. Montmorency tart cherry juice has improved insomnia by self-report questionnaire. Study Question: Is insomnia confirmed by polysomnography and is tryptophan availability a potential mechanism for treating insomnia? Study Design: A placebo-controlled balanced crossover study with subjects older than 50 years and insomnia were randomized to placebo (2 weeks) or cherry juice (2 weeks) (240 mL 2 times/d) separated by a 2-week washout. Measures and Outcomes: Sleep was evaluated by polysomnography and 5 validated questionnaires. Serum indoleamine 2,3-dioxygenase (IDO), …