Digital Commons Network^™

Characterization Of An Extensive Interface On Vitronectin For Binding To Plasminogen Activator Inhibitor-1: Adoption Of Structure In An Intrinsically Disordered Region, Letitia O. Puster, Christopher B. Stanley, Vladimir N. Uversky, Joseph E. Curtis, Susan Krueger, Yuzhuo Chu, Cynthia B. Peterson

Faculty Publications

Copyright © 2019 American Chemical Society. Small-angle neutron scattering (SANS) measurements were pursued to study human vitronectin, a protein found in tissues and the circulation that regulates cell adhesion/migration and proteolytic cascades that govern hemostasis and pericellular proteolysis. Many of these functions occur via interactions with its binding partner, plasminogen activator inhibitor-1 (PAI-1), the chief inhibitor of proteases that lyse and activate plasminogen. We focused on a region of vitronectin that remains uncharacterized from previous X-ray scattering, nuclear magnetic resonance, and computational modeling approaches and which we propose is involved in binding to PAI-1. This region, which bridges the N-terminal …

Evidence For Late-Stage Eruptive Mass Loss In The Progenitor To Sn2018gep, A Broad-Lined Ic Supernova: Pre-Explosion Emission And A Rapidly Rising Luminous Transient, Anna Y.Q. Ho, Daniel A. Goldstein, Steve Schulze, David K. Khatami, Daniel A. Perley, Mattias Ergon, Avishay Gal-Yam, Alessandra Corsi, Igor Andreoni, Cristina Barbarino, Eric C. Bellm, Nadia Blagorodnova, Joe S. Bright, E. Burns, S. Bradley Cenko, Virginia Cunningham, Kishalay De, Richard Dekany, Alison Dugas, Rob P. Fender, Claes Fransson, Christoffer Fremling, Adam Goldstein, Matthew J. Graham, David Hale, Assaf Horesh, Tiara Hung, Mansi M. Kasliwal, N. Paul M. Kuin, S. R. Kulkarni, Thomas Kupfer, Ragnhild Lunnan, Frank J. Masci

Faculty Publications

We present detailed observations of ZTF18abukavn (SN2018gep), discovered in high-cadence data from the Zwicky Transient Facility as a rapidly rising (1.4 ± 0.1 mag hr-1) and luminous (Mg,peak = -20 mag) transient. It is spectroscopically classified as a broad-lined stripped-envelope supernova (Ic-BL SN). The high peak luminosity (Lbol ≳ 3 × 1044 erg s-1), the short rise time (trise = 3 days in g band), and the blue colors at peak (g-r ∼ -0.4) all resemble the high-redshift Ic-BL iPTF16asu, as well as several other unclassified fast transients. The early discovery of SN2018gep (within an hour of shock breakout) enabled …

Microcanonical Analysis Of Boltzmann And Gibbs Entropies In Trapped Cold Atomic Gases, Kenneth J. Higginbotham, Daniel E. Sheehy

Faculty Publications

We analyze a gas of noninteracting fermions confined to a one-dimensional harmonic oscillator potential, with the aim of distinguishing between two proposed definitions of the thermodynamic entropy in the microcanonical ensemble, namely the standard Boltzmann entropy and the Gibbs (or volume) entropy. The distinction between these two definitions is crucial for systems with an upper bound on allowed energy levels, where the Boltzmann definition can lead to the notion of negative absolute temperature. Although negative temperatures do not exist for the system of fermions studied here, we still find a significant difference between the Boltzmann and Gibbs entropies, and between …

Exact Isovector Pairing In A Shell-Model Framework: Role Of Proton-Neutron Correlations In Isobaric Analog States, M. E. Miora, K. D. Launey, D. Kekejian, F. Pan, J. P. Draayer

Faculty Publications

We utilize a nuclear shell model Hamiltonian with only two adjustable parameters to generate, for the first time, exact solutions for pairing correlations for light to medium-mass nuclei, including the challenging proton-neutron pairs, while also identifying the primary physics involved. In addition to single-particle energy and Coulomb potential terms, the shell model Hamiltonian consists of an isovector T=1 pairing interaction and an average proton-neutron isoscalar T=0 interaction, where the T=0 term describes the average interaction between nonpaired protons and neutrons. This Hamiltonian is exactly solvable, where, utilizing three to seven single-particle energy levels, we reproduce experimental data for 0+ state …

Influencing Factors On The Velocity And Temperature Of Propagating Fronts In Acrylate Composites, Samuel Morris Bynum

LSU Doctoral Dissertations

Thermal frontal polymerization is a type of polymerization in which a localized reaction zone propagates through an unstirred system. It is incumbent upon the production and transport of heat produced as a result of the exothermic reaction associated with free-radical polymerization. First discovered in the 1970s, frontal polymerization has been since utilized to produce a variety of different materials, utilizing a variety of different chemistries. The temperature of the propagating front and the velocity at which it propagates can be influenced via chemical or physical means. We show that through careful selection of monomers and control of the concentration of …

Search For Gravitational Waves From Scorpius X-1 In The Second Advanced Ligo Observing Run With An Improved Hidden Markov Model, B. P. Abbott, R. Abbott, T. D. Abbott, S. Abraham, F. Acernese, K. Ackley, C. Adams, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, G. Allen, A. Allocca, M. A. Aloy, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. V. Angelova, S. Antier, S. Appert, K. Arai, M. C. Araya, J. S. Areeda, M. Arène, N. Arnaud

Faculty Publications

We present results from a semicoherent search for continuous gravitational waves from the low-mass x-ray binary Scorpius X-1, using a hidden Markov model (HMM) to track spin wandering. This search improves on previous HMM-based searches of LIGO data by using an improved frequency domain matched filter, the J-statistic, and by analyzing data from Advanced LIGO's second observing run. In the frequency range searched, from 60 to 650 Hz, we find no evidence of gravitational radiation. At 194.6 Hz, the most sensitive search frequency, we report an upper limit on gravitational wave strain (at 95% confidence) of h095%=3.47×10-25 when marginalizing over …

Calculations With Graded Perverse-Coherent Sheaves, Pramod N. Achar, William D. Hardesty

Faculty Publications

In this paper, we carry out several computations involving graded (or Gm-equivariant) perversecoherent sheaves on the nilpotent cone of a reductive group in good characteristic. In the first part of the paper, we compute the weight of the Gm-action on certain normalized (or 'canonical') simple objects, confirming an old prediction of Ostrik. In the second part of the paper, we explicitly describe all simple perverse-coherent sheaves for G = PGL3, in every characteristic other than 2 or 3. Applications include an explicit description of the cohomology of tilting modules for the corresponding quantum group, as well as a proof that …

Virtual Enriching Operators, Susanne C. Brenner, Li Yeng Sung

Faculty Publications

We construct bounded linear operators that map H conforming Lagrange finite element spaces to H conforming virtual element spaces in two and three dimensions. These operators are useful for the analysis of nonstandard finite element methods. 1 2

Stabilization And Robustness Analysis For A Chain Of Saturating Integrators Arising In The Visual Landing Of Aircraft, Laurent Burlion, Michael Malisoff, Frederic Mazenc

Faculty Publications

We study a chain of saturating integrators with imprecise output measurements, which arises in the study of visual landing of aircraft. Our input-to-state stability result uses a new dynamic extension. We illustrate our result in an aerospace application with realistic model parameters.

Results From A 14-Year Intervention Program Designed To Impact Pursuit Of A Phd In Research Among Underrepresented Students In Stem Disciplines, Gretchen Schneider Burton, Eugene Kennedy, Maria Da Graça H. Vicente

Faculty Publications

Minority research and training (MRT) programs have been used across U.S. colleges and universities as a method to close the educational achievement gap and generate a highly skilled and diverse workforce. Previous studies have improved our understanding of the need to diversify the science, technology, engineering and mathematics (STEM) disciplines and the various interventions that have been developed to support these efforts. However, there is still little evidence about what strategies are most effective in promoting interest, continuation, and matriculation into STEM graduate programs among underrepresented groups. The study herein utilized a case study design with a mixed methods approach …

Alu Insertion Polymorphisms Shared By Papio Baboons And Theropithecus Gelada Reveal An Intertwined Common Ancestry, Jerilyn A. Walker, Vallmer E. Jordan, Jessica M. Storer, Cody J. Steely, Paulina Gonzalez-Quiroga, Thomas O. Beckstrom, Lydia C. Rewerts, Corey P. St. Romain, Catherine E. Rockwell, Jeffrey Rogers, Clifford J. Jolly, Miriam K. Konkel, Mark A. Batzer, R. Alan Harris, Muthuswamy Raveendran, Yue Liu, Shwetha Murali, Tauras P. Vilgalys, Gregg W.C. Thomas, Kymberleigh A. Pagel, Vikas Pejaver, Claudia R. Catacchio, Nicoletta Archidiacono, Mario Ventura, Alessia Marra-Campanale, Antonio Palazzo, Oronzo Capozzi, Archana Raja, John Huddleston, Veronica Searles Quick, Anis Karimpour-Fard, Dominik Schrempf, Marc De Manuel Montero, Konstantinos Billis

Faculty Publications

© 2019 The Author(s). Background: Baboons (genus Papio) and geladas (Theropithecus gelada) are now generally recognized as close phylogenetic relatives, though morphologically quite distinct and generally classified in separate genera. Primate specific Alu retrotransposons are well-established genomic markers for the study of phylogenetic and population genetic relationships. We previously reported a computational reconstruction of Papio phylogeny using large-scale whole genome sequence (WGS) analysis of Alu insertion polymorphisms. Recently, high coverage WGS was generated for Theropithecus gelada. The objective of this study was to apply the high-Throughput "poly-Detect" method to computationally determine the number of Alu insertion polymorphisms shared by T. …

Apparatuses, Systems And Methods For Performing Remote Real-Time Experiments, Paulo J. Waltrich

College of Engineering Patents

Embodiments of the present invention include apparatuses and methods for performing remote experiments in real-time. The method includes sending requests to perform remote experiments for a desired configuration to a first and second facility. The desired configuration may include a first and second configuration. The method includes running a first remote experiment in real-time at the first facility to obtain a first output variable. The first facility may include the first configuration with a first input variable. The method includes simultaneously running a second remote experiment in real-time at a second facility to obtain a second output variable. The second …

@Houstonpolice: An Exploratory Case Of Twitter During Hurricane Harvey, Seungwon Yang, Brenton Stewart

Faculty Publications

Abstract

Purpose

The purpose of this paper is to examine the Houston Police Department (HPD)’s public engagement efforts using Twitter during Hurricane Harvey, which was a large-scale urban crisis event.

Design/methodology/approach

This study harvested a corpus of over 13,000 tweets using Twitter’s streaming API, across three phases of the Hurricane Harvey event: preparedness, response and recovery. Both text and social network analysis (SNA) techniques were employed including word clouds, n-gram analysis and eigenvector centrality to analyze data.

Findings

Findings indicate that departmental tweets coalesced around topics of protocol, reassurance and community resilience. Twitter accounts of governmental agencies, such as …

The Societal Collapse Of The Southern Lowland Maya Civilization: Don’T Miss The Forest For The Trees, Dwayne Hinton

Honors Capstones

No abstract provided.

Tests Of General Relativity With The Binary Black Hole Signals From The Ligo-Virgo Catalog Gwtc-1, B. P. Abbott, R. Abbott, T. D. Abbott, S. Abraham, F. Acernese, K. Ackley, C. Adams, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, G. Allen, A. Allocca, M. A. Aloy, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. V. Angelova, S. Antier, S. Appert, K. Arai, M. C. Araya, J. S. Areeda, M. Arène, N. Arnaud

Faculty Publications

The detection of gravitational waves by Advanced LIGO and Advanced Virgo provides an opportunity to test general relativity in a regime that is inaccessible to traditional astronomical observations and laboratory tests. We present four tests of the consistency of the data with binary black hole gravitational waveforms predicted by general relativity. One test subtracts the best-fit waveform from the data and checks the consistency of the residual with detector noise. The second test checks the consistency of the low- and high-frequency parts of the observed signals. The third test checks that phenomenological deviations introduced in the waveform model (including in …

Modeling And Simulations Of Peptoids, Pu Du

LSU Doctoral Dissertations

Polypeptoids, or poly-N-substituted glycines, are a class of sequence defined polymers that are structural mimics of polypeptides. Polypeptoids currently have received a growing interest due to their improved thermal stability, larger chemical diversity, and easier synthetic pathways as compared to peptides. Their lack of backbone hydrogen bonding and stereochemistry coupled with their easily tunability make them an ideal prototypical model system to study the effect of secondary/non-covalent interactions on self-assembly in solution. In order to develop a molecular level understanding of the effect of secondary interactions on polypeptoid self-assembly, systematic studies were carried out using molecular dynamics simulations on several …

Trouble At Old River: An Economic Evaluation Of An Avulsion On United States Soybean Trade, Patrice Maria Lazard

LSU Master's Theses

The Mississippi River is an essential asset to agricultural trade given that its existence contributes to a cost-efficient transportation system. Barge travel allows large amounts of soybeans and other bulk commodities to be transported at low costs. Currently, barge costs are the lowest relative to those of other modes. Although there has been increasing competition for soybean shares from other countries in the global market, low transportation costs of soybeans, grain, and other oilseed crops allow the United States to retain its competitive advantage in the world soybean market. The Mississippi River’s urgency to change course and possibly eliminate barge …

Breaking Coastal Hypoxia: Destratification Of Gulf Of Mexico Deadzone To Encourage Oxygen Transport Downwards To Maintain Marine Fauna, Veda Thipparthi

LSU Master's Theses

As a consequence of seasonal eutrophication and human input, a vast hypoxic area termed The Dead Zone develops every year in the Gulf of Mexico (GOM) during summer along the Louisiana coastline characterized by vertical seawater density-stratification with oxygen concentrations less than 2 mg.l^-1 at the seafloor. It poses a threat to bottom-dwelling faunae and their environment which has negative ecological and economic consequences. This project aims to mitigate hypoxia by employing mechanical impellers placed at strategic water depths and locations in the Gulf. Enhanced transport of oxygen results by mixing oxygen-enriched seawater at the surface, downward into the …

Supporting The Algebra I Curriculum With An Introduction To Computational Thinking Course, Michelle M. Laskowski

LSU Master's Theses

The Louisiana Workforce Commission predicts a 33.6% increase in computer science and mathematical occupations by 2022 and the Bureau of Labor Statistics foresees a 16% increase in computer scientists from 2018-2028. Despite these opportunities for job and financial security, the number of Louisiana students enrolled in a nationally accredited computing course is less than 1%, compared to national leaders California and Texas which have 3% and 3.8% of students respectively. Furthermore, the international assessments of mathematical literacy, PISA and TIMMS, both report American students continue to fall further behind their international peers in mathematics achievement.

This thesis rejects these statistics …

Safety Assessment Of Road Vehicle In Crosswind Considering Driver Behavior, Jiexuan Hu

LSU Doctoral Dissertations

With expansion of the economy, more and more highway networks extend to coastal areas and mountain valley areas. Vehicles will be exposed to strong crosswinds when driven on these highway roads, especially in hurricane season and in winter in these two different topographic areas. Strong crosswinds threaten the safety of transportation infrastructure and passing vehicles in forms of vehicle accidents that usually result in traffic blockage and driver injury, posing negative effects on economic growth. This dissertation aimed to evaluate the vehicle safety when running through crosswinds in consideration of driver behaviors.

Firstly, the aerodynamic characteristics of road vehicles were …

Molecular Dynamics Simulations Of Interaction Of Dna Nucleotides And Lignin Oligomers With Small Molecules And Interfaces, Xinjie Tong

LSU Doctoral Dissertations

Molecular dynamics (MD) simulations of interaction of DNA nucleotides with self-assembled monolayers (SAMs) provide valuable information that is critical to the development of a new DNA sequencing technique. We investigated the interactions and transport characteristics of mononucleotides moving through nanoslits with SAMs-covered surfaces. Our simulations focused on nanoslits in which the walls were composed of three different types of SAMs: methylformyl terminated, methyl terminated, and phenoxy terminated. The results demonstrated that the phenoxy terminated surfaces have the shortest required nanoslits length for nucleotides separation.

Using MD simulations, we also investigated the interaction of mono-lignin and oligo-lignols with lipid bilayers and …

Simultaneous Enhancement Of Near-Infrared Emission And Dye Photodegradation In A Racemic Aspartic Acid Compound Via Metal-Ion Modification, Frank R. Fronczek, Jian Xu

Faculty Publications

Changing functionalities of materials using simple methods is an active area of research, as it is "green" and lowers the developing cost of new products for the enterprises. A new small molecule racemic N,N-dimethyl aspartic acid has been prepared. Its structure is determined by single-crystal X-ray diffraction. It is characterized by FTIR, XPS, 1 H NMR, and mass spectroscopy. Its near-infrared luminescence can be enhanced by the combination of metal ions, including Dy3+, Gd3+, Nd3+, Er3+, Sr3+, Y3+, Zn2+, Zr4+, Ho3+, Yb3+, La3+, Pr6+/Pr3+, and Sm3+ ions. An optical chemistry mechanism upon interaction between the sensitizer and activator is proposed. …

Dynamical Modeling In Cell Biology With Ordinary Differential Equations, Renee Marie Dale

LSU Doctoral Dissertations

Dynamical systems have been of interest to biologists and mathematicians alike. Many processes in biology lend themselves to dynamical study. Movement, change, and response to stimuli are dynamical characteristics that define what is 'alive'. A scientific relationship between these two fields is therefore natural. In this thesis, I describe how my PhD research variously related to biological, mathematical, and computational problems in cell biology. In chapter 1 I introduce some of the current problems in the field. In chapter 2, my mathematical model of firefly luciferase in vivo shows the importance of dynamical models to understand systems. Data originally collected …

Measurements Of The 16c + 12c And 16c + 13c Fusion Cross Sections With Implications For Astrophysics, Ashley Ann Hood

LSU Doctoral Dissertations

The fusion of neutron-rich nuclei is of interest to nuclear astrophysics and nuclear structure. X-ray superbursts are powered by runaway thermonuclear burning deep inside of a neutron star, where heating from the pycnonuclear fusion of neutron-rich isotopes is an important heat source. Experimental measurements of fusion cross sections of neutron-rich isotopes have provided insights regarding nucleon transfer and nuclear structure properties affecting fusion. Recently, the ¹⁵C + ¹²C total fusion cross section was measured using a ¹⁵C beam produced by the in-flight beam production facility, which is part of the Argonne Tandem LINAC Accelerator System (ATLAS) at …

Hierarchical Conjugated Polymer Systems Prepared By Controlled Chain-Growth Polymerization, Chunwa Peter Kei

LSU Doctoral Dissertations

π-Conjugated polymer materials may have a significant economic impact on society by providing means for designing affordable, flexible, and portable organic electronic devices. Their successful commercialization will depend on major scientific advancements, which will challenge human society to seek out ever more detailed and fundamental processes to command. Controlled polymerization affords such a power; allowing for the design of meticulous and precisely defined systems granting detailed insight into structure-property relationships in the polymer materials and bettering understanding of novel physical phenomena.

This dissertation primarily focuses on development and preparation of well-defined hierarchically organized macromolecular systems. The novel chain-growth polymerization methodologies …

Managing Overheads In Asynchronous Many-Task Runtime Systems, Bibek Wagle

LSU Doctoral Dissertations

Asynchronous Many-Task (AMT) runtime systems are based on the idea of dividing an algorithm into small units of work, known as tasks. The runtime system is then responsible for scheduling and executing these tasks in an efficient manner by taking into account the resources provided to it and the associated data dependencies between the tasks. One of the primary challenges faced by AMTs is managing such fine-grained parallelism and the overheads associated with creating, scheduling and executing tasks. This work develops methodologies for assessing and managing overheads associated with fine-grained task execution in HPX, our exemplar Asynchronous Many-Task runtime system. …

The Effects Of Temperature On The Yields Of Aliphatic And Aromatic Products From The Supercritical Pyrolysis Of 1-Octene, Elizabeth Anne Hurst

LSU Doctoral Dissertations

Prior to their combustion, fuels for future high-speed aircraft are expected to experience supercritical conditions, leading to the production of polycyclic aromatic hydrocarbons (PAH), precursors to solid carbonaceous deposits, via pyrolytic reactions. These solid deposits can clog fuel-transfer lines, causing unsafe aircraft operation. To prevent the formation of fuel-line deposits, it is critical to understand the reaction pathways that lead to PAH formation in the supercritical fuel pyrolysis environment.

To better understand the role of large 1-alkenes in PAH formation, supercritical pyrolysis experiments with model fuel 1-octene, a representative 1-alkene product from supercritical n-alkane pyrolysis, have been performed. The …

The Use Of Social Media In Emergency Management By Public Agencies And Non-Governmental Organizations: Lessons Learned From Areas Affected By Hurricanes Isaac, Sandy, And Harvey, Ryan Hamilton Kirby

LSU Doctoral Dissertations

Natural disasters are increasingly costly for the United States. The literature suggests emergency managers may improve disaster outcomes and enhance disaster resilience by supplementing their official public-communications methods with more bi-directional communication tactics using social media. This study aims to understand how social media is used within the “whole community” of emergency management in areas affected by recent hurricanes. The first research objective examines how social media is used by governmental and non-governmental organizations across the four phases of emergency management (preparedness, response, recovery, mitigation). The second objective is to identify challenges governmental and non-governmental groups have encountered and strategies …

High Power And Optomechanics In Advanced Ligo Detectors, Terra Christine Hardwick

LSU Doctoral Dissertations

In September 2015, a new era of astronomy began with the first direct detection of grav- itational waves from a binary black hole coalescence. The event was captured by the Laser Interferometer Gravitational-wave Observatory, comprised of two long-baseline interferometers, one in Livingston, LA and one in Hanford, WA. At the time of the first detection, the interferometers were part way through an upgrade to an advanced configuration and were operating with a strain sensitivity of just better than 10⁻²³/Hz^1/2 around 100Hz. The full Advanced LIGO design calls for sensitivity of a few parts in 10⁻²⁴/Hz …

Bio-Mechanical Characterization Of Adherent Cell Layers With A Pdms Cantilever, Merrel Truly Holley

LSU Doctoral Dissertations

In the last few decades, the mechanical characteristics of human cells has been linked to many physiological processes and pathological conditions, illustrating the importance as effective biomarkers. Mounting research has shown the mechanical force between cells and the extracellular matrix (ECM) plays a vital role in cellular processes such as tissue homeostasis, wound healing, cancer metastasis, and the progression of various diseases. This mechanical force, or the force that a cell produces on its surroundings, is termed as the cellular traction force (CTF). Precise characterization of the CTF can expand our knowledge of these important cellular processes as well as …