Digital Commons Network^™

Evaluation Of Changes In Drug Susceptibility And Population Genetic Structure In Haemonchus Contortus Following Worm Replacement As A Means To Reverse The Impact Of Multiple-Anthelmintic Resistance On A Sheep Farm, Melissa M. George, Adriano F. Vatta, Sue B. Howell, Bob E. Storey, Ciaran J. Mccoy, Adrian J. Wolstenholme, Elizabeth M. Redman, John S. Gilleard, Ray M. Kaplan

Faculty Publications

A population of Haemonchus contortus that was highly resistant to benzimidazoles and avermectin/milbemycins with a subpopulation that was resistant to levamisole, was replaced with a susceptible laboratory isolate of H. contortus in a flock of sheep. The anthelmintic susceptibility and population genetics of the newly established population were evaluated for 3.5 years using in vivo, in vitro, and molecular methods. Successful replacement of the resistant population with a susceptible population was confirmed using phenotypic and genotypic measurements; larval development assay indicated full anthelmintic susceptibility; albendazole treatment yielded 98.7% fecal egg count reduction; pyrosequence genotyping of single nucleotide polymorphisms in positions …

Envrtype: A Software To Interplay Enviromics And Quantitative Genomics In Agriculture, Germano Costa-Neto, Giovanni Galli, Humberto Fanelli Carvalho, Jose Crossa, Roberto Fritsche-Neto

Faculty Publications

Envirotyping is an essential technique used to unfold the nongenetic drivers associated with the phenotypic adaptation of living organisms. Here, we introduce the EnvRtype R package, a novel toolkit developed to interplay large-scale envirotyping data (enviromics) into quantitative genomics. To start a user-friendly envirotyping pipeline, this package offers: (1) remote sensing tools for collecting (get_weather and extract_GIS functions) and processing ecophysiological variables (processWTH function) from raw environmental data at single locations or worldwide; (2) environmental characterization by typing environments and profiling descriptors of environmental quality (env_typing function), in addition to gathering environmental covariables as quantitative descriptors for predictive purposes (W_matrix …

Hybrid Modeling And Prediction Of Oyster Norovirus Outbreaks, Shima Shamkhali Chenar, Zhiqiang Deng

Faculty Publications

This paper presents a hybrid model for predicting oyster norovirus outbreaks by combining the Artificial Neural Networks (ANNs) and Principal Component Analysis (PCA) methods and using the Moderate Resolution Imaging Spectroradiometer (MODIS) satellite remote-sensing data. Specifically, 10 years (2007-2016) of cloud-free MODIS Aqua data for water leaving reflectance and environmental data were extracted from the center of each oyster harvest area. Then, the PCA was utilized to compress the size of the MODIS Aqua data. An ANN model was trained using the first 4 years of the data from 2007 to 2010 and validated using the additional 6 years of …

Distance-Based Formation Control Using Decentralized Sensing With Infrared Photodiodes, Steven Williams

LSU Master's Theses

This study presents an onboard sensor system for determining the relative positions of mobile robots, which is used in decentralized distance-based formation controllers for multi-agent systems. This sensor system uses infrared photodiodes and LEDs; its effective use requires coordination between the emitting and detecting robots. A technique is introduced for calculating the relative positions based on photodiode readings, and an automated calibration system is designed for future maintenance. By measuring the relative positions of their neighbors, each robot is capable of running an onboard formation controller, which is independent of both a centralized controller and a global positioning-like system (e.g., …

Voice Therapy: Racial Disparities In Adherence And Clinically Significant Outcomes, Amber D. Burks

LSU Master's Theses

Voice therapy is evidence-based, behavioral intervention that can reduce functional and organic voice disorders. Despite its proven effectiveness, non-adherence to voice therapy is still an issue. Research shows that an estimated 65% of patients who initiate voice therapy drop out before reaching therapeutic goals. Voice therapy outcomes are largely dependent on patients’ adherence to treatment regimens, but there is limited information concerning factors that may be associated with voice therapy adherence and therapeutic outcomes for patients who successfully complete voice therapy.

The purpose of this study was to investigate which demographic factors could be associated with higher adherence rates to …

Sea-Level Rise And Settlement At Ta’Ab Nuk Na, Belize: Analyses Of Marine Sediment From The I-Line, 4m Transect, Conner B. Flynt

LSU Master's Theses

The ancient Maya of Mesoamerica created a culture with writing, religion, and vast trade networks. These trade networks are evident on the southern coast of Belize, where archaeologists have found sites dedicated to salt making. One of these sites, Ta’ab Nuk Na, was the subject of this thesis. Sediment and charcoal samples were collected from this site by the Underwater Maya Research Group led by Heather McKillop and E. Cory Sills. For my thesis research, I subjected these samples and components within them to loss-on ignition, radiometric dating, and microscopic analysis. Loss-on ignition was used to ascertain organic material percentage …

Staging Reformation: Religious Theater In England, 1525-1553, Alexandra R. Whitley

LSU Master's Theses

This thesis analyzes and explores the role of privately sponsored religious theater and dramatic performance in the English Reformation, 1525-1553. In the sixteenth century, most theater was religious in nature, and audiences were accustomed to receiving clear moral and political messaging in the form of dramatic entertainment. Plays that were written and performed specifically for individual monarchs also include these commentaries and moral arguments, and can provide historians with significant insight into what messages were presented to monarchs. These insights are particularly illuminating in studies of the cultural progress of the English Reformation under Henry VIII, Edward VI, and Mary …

Improving Memory Forensics Through Emulation And Program Analysis, Ryan Dominick Maggio

LSU Doctoral Dissertations

Memory forensics is an important tool in the hands of investigators. However, determining if a computer is infected with malicious software is time consuming, even for experts. Tasks that require manual reverse engineering of code or data structures create a significant bottleneck in the investigative workflow. Through the application of emulation software and symbolic execution, these strains have been greatly lessened, allowing for faster and more thorough investigation. Furthermore, these efforts have reduced the barrier for forensic investigation, so that reasonable conclusions can be drawn even by non-expert investigators. While previously Volatility had allowed for the detection of malicious hooks …

Optomechanical Quantum Entanglement, Kahlil Y. Dixon

LSU Doctoral Dissertations

As classical technology approaches its limits, exploration of quantum technologies is critical. Quantum optics will be the basis of various cutting-edge research and applications in quantum technology. In particular, quantum optics quite efficacious when applied to quantum networks and the quantum internet. Quantum Optomechanics, a subfield of quantum optics, contains some novel methods for entanglement generation. These entanglement production methods exploit the noise re-encoding process, which is most often associated with creating unwanted phase noise in optical circuits. Using the adapted two-photon formalism and experimental results, we simulate (in an experimentally viable parameter space) optomechanical entanglement generation experiments. These simulations …

Hume's Objects After Deleuze, Michael P. Harter

LSU Master's Theses

The skeptical challenge of David Hume in the 18th Century presented a shock to existing dogmatic thinking in philosophy. In challenging long-held and fundamental beliefs about the nature of causation and the external world, Hume would be categorized as a radical skeptic and anti-realist by his contemporaries and Immanuel Kant later on. However, renewed debate over these historical interpretations of Hume has emerged, and those under the New Hume banner argue that Hume held a realist position. However, all of these interpretations are not without their issues. In this thesis, I show that the historical readings of Hume misjudge the …

Assessing The Validity Of The Estimation Of Population Affinity From The Maxillary Hard Palate: An Empirical Approach Using A Modern Forensic Sample, Christopher M. Goden

LSU Master's Theses

In response to Beathard and DiGangi’s (2020) call to action for empirical assessment of population affinity estimation methodology, this study investigates the validity of maxillary palate shape as an indicator of ancestral population affinity for human skeletal remains through the use of Elliptical Fourier Analysis (EFA) and Linear Discriminant Function Analysis (DFA). Further, this study also places emphasis on the expressed variation of palate shape within and between population groups exemplified by Principal Component Analysis (PCA) of EFA data.

Computed tomography scans of 180 individuals of Black, White, and Hispanic population affinities were obtained from the New Mexico Decedent Imaging …

Stream Power Analysis Of The Mid-Barataria Conveyance Channel Model, Jack Graham

LSU Master's Theses

Louisiana’s coast is disappearing at an alarming rate. Erosion, subsidence, sea level rise, and the devastating impacts from hurricanes have contributed to the loss of thousands of square miles of land that was once a thriving ecosystem. The Louisiana government is taking action to help protect and restore these coastal habitats, which are a home to some two million people and numerous species of animals, birds, and fish. The Mid-Barataria Sediment Diversion is a new type of project to help create land in Barataria Basin. Conceptually, the diversion is designed to use the available sediment and stream power provided by …

Effects Of Marsh Management In Coastal Marsh Impoundments On Marsh Vertical Accretion In The Face Of Sea Level Rise., Scott P. Graham

LSU Master's Theses

Many coastal marshes are managed for wildlife through the use of levees and water control structures. Management techniques such as water manipulation, herbicide application, and controlled burns are used to set back succession and facilitate recruitment of annual plant species, which are highly sought after by many wildlife. These marsh impoundments alter or prevent natural tidal exchange, which might alter or prevent sediment and nutrient inputs to the marsh. Although these management techniques are effective in managing for wildlife, there are few studies comparing vertical accretion between managed and unmanaged marshes. Vertical accretion is important because it allows coastal wetlands …

How "Lyingnewspapers" Made Huey Long The Ruler Of His State: A Model Of Press-Populist Dynamics, Christina A. Georgacopoulos

LSU Master's Theses

Huey Long’s use of the phrase “lyingnewspapers” to discredit negative publicity is commonly cited as evidence of his negative relationship with the mainstream press, but he did not always hold a hostile view toward newspapers. Before the press turned against him during his enemies' attempt to impeach him as governor in 1929, newspapers were one of his central tools for political advancement. He devised strategies to attract press attention and relied on newspapers to publicize himself and propagate his ideas more frequently and consistently than he used circulars or radio broadcasts, which are commonly attributed to his political success. As …

Adsorption And Transport Of Colloids At Interface And In Bulk, Jingyun Lee

LSU Doctoral Dissertations

Colloids are suspensions of microscopic insoluble particles dispersed in a continuum phase such as liquid or gas. Colloids are found in our everyday life from food and cosmetic industries to pharmaceutical and biomedical applications. Depending on a global minimum of the free-energy landscape, colloidal suspensions can be classified as two major classes: equilibrium or active colloidal system. This Ph.D dissertation presents strategies to engineer equilibrium self-assembled structures and out-of-equilibrium active matter using various interparticle forces.

First, we introduce the means to promote the equilibrium self-assembled structures driven by adsorption of colloids at interface. Typically, adsorption of colloids at interface is …

Revisiting Reif And Schmitt: Second-Order Effects In European Parliament Elections, 1979-2019, Jordan Kyje Landry

LSU Doctoral Dissertations

Are elections to the European Parliament (EP) truly “second-order” reactions to “first-order” national elections and politics? Ever since Reif and Schmitt (1980), the consensus in both academic and journalistic accounts has been a resounding yes. However, comprehensive quantitative confirmation of this consensus has been lacking, and those studies that have been done have been temporally limited, regionally limited, or at least somewhat critical of Reif and Schmitt’s observations. After setting the stage with a historical account of the EP’s creation and evolution, I attempt to fill this lacuna by constructing a new data set of party-election observations (over 1300 in …

Non-Newtonian Model Development For Post-Wildfire Flood Risk Management, Ian Eli Floyd

LSU Doctoral Dissertations

Wildfire effected regions of the western U.S. frequently produce non-Newtonian floods (or floods that have a non-linear relationship between stress and deformation) in response to moderate to severe precipitation events. This research presents the development, evaluation, and demonstration of a post-wildfire hydrodynamic one-dimensional and two-dimensional diffusive wave and shallow-water numerical modeling approach that can be used to predict post-wildfire downstream runout of debris flows and floodplain inundation conditions. While researchers have developed a variety of Non-Newtonian approaches to simulate debris flows and mudflows, there has been very limited application to post-wildfire flooding. This can make it difficult to understand the …

Operation Procedures Of Mid-Barataria Sediment Diversion Model To Reproduce Hydraulics And Sediment Transport, Chase Holston

LSU Master's Theses

The Lower Mississippi River Physical Model (LMRPM) is a distorted, movable bed model that simulates the hydraulics and sediment transport in the lower 195 miles of the Mississippi River. Carved into the model are both existing hydraulic structures, such as the Bonnet Carré Spillway, and proposed structures, such as the Mid-Barataria Sediment Diversion (MBSD). The MBSD will be the first sediment diversion built as part of Louisiana’s Coastal Master Plan, so incorporating the diversion in the LMRPM will be a useful tool to understanding how the diversion can impact the river hydraulics and bedload transport. The objective of this thesis …

Investigating The Impact Of Meteoric Diagenesis On The Geochemistry Of Carbonate Eolianites, Eleuthera And Water Cay, The Bahamas, Graham S. Bonnot

LSU Master's Theses

The geochemical signatures imparted in major, minor, and trace elements, combined with light isotopes, suggest promising applications regarding the stabilization of meteorically altered limestone eolianites. Previous high-resolution studies have indicated that elements associated with carbonate diagenesis such as Mg and Sr can be valuable proxies for salinity and aragonite dissolution, respectively. In addition to testing these proxies, the analyses of several temperature-, diagenetic-, bioactive-, and redox-sensitive elements were evaluated using laser ablation inductively-coupled plasma mass spectrometry (LA-ICP-MS) to identify additional indicators during carbonate diagenesis. Two geochemical drivers of U were identified; (1) aragonite dissolution similar to Sr and (2) oxidation …

Characterization Of Memory T-Lymphocyte Subsets In Dogs, Annie Beth Bauman

LSU Master's Theses

A more complete understanding of canine T-cell immunity is necessary for improving diagnostic and therapeutic approaches to canine diseases, developing cell-based canine immunotherapeutics, and evaluating dogs as large mammal models for comparative immunology research. Canine immunological studies are limited by the lack of established phenotypic markers identifying diverse differentiation states in canine T-cells. Differential expression of CD45RA (indicating antigen experience) and CD62L (indicating lymph node homing capability), shows promise as a tool to delineate canine naïve (TN), central memory (TCM), effector memory (TEM), and terminal effector memory (TEMRA) T-cells. The aim of this study was to characterize canine memory T-cell …

Using The Seventh Rib Length And Depth Measurements As A Method To Estimate Ancestry And Sex In Adults, Alexandria M. Amaki

LSU Master's Theses

This study tested the correlation of dimensions of the left seventh rib (L7) to ancestry and sex in adult humans. The first hypothesis, based on Bergmann’s theory, is that Black (African-American) individuals will have smaller L7 dimensions than White individuals (Americans of primarily European descent). The second hypothesis is that males, due to sexual dimorphism, will have larger ribs than females. 299 individuals from the Hamann-Todd Skeletal Collection were used in the study, approximately evenly distributed among sex and ancestry groups. Five variables were examined, including three measurements (length, width, and width point), and two calculations (area and ratio). A …

Anxiety And Depression's Incremental Effect On Executive Functioning Deficits In Children And Adolescents, Paige Picou

LSU Master's Theses

Children and adolescents experiencing anxiety and/or depression experience impairment in a myriad of domains and often engage in maladaptive strategies that then exacerbate or prolong their current symptomology. However, there is still a paucity of research examining anxiety and depression’s impact on executive functioning in children and adolescents, and existing research is muddled with problems in how researchers both define and choose to measure executive functioning. This study aims to clarify some of the conflicting research on anxiety and depression’s impact on executive functioning by using Barkley’s hybrid theory of executive functioning to determine whether anxiety and depressive symptomology add …

Energy-Constrained Distinguishability Measures For Assessing Performance In Quantum Information Processing, Kunal Sharma

LSU Doctoral Dissertations

The aim of this thesis is to develop a framework for assessing performance in quantum information processing with continuous variables. In particular, we focus on quantifying the fundamental limitations on communication and computation over bosonic Gaussian systems. Due to their infinite-dimensional structure, we make a realistic assumption of energy constraints on the input states of continuous-variable (CV) quantum operations. Our first contribution is to show that energy-constrained distinguishability measures can be used to establish tight upper bounds on the communication capacities of phase-insensitive, bosonic Gaussian channels -- thermal, amplifier, and additive-noise channels. We then prove that an optimal Gaussian input …

Predictive Modeling Of Fmol Health System Utilization Using Machine Learning Algorithms And Retrospective Study Of Covid Tested Patients, Ramyakrishna Tummala

LSU Master's Theses

Overutilization of Emergency Departments (ED) is a major problem among the health care providers in the United States. In this research, a machine learning-based predictive model for predicting ED high utilizers will be designed based on a set of existing and proposed facilities and the population and social determinant of health (SDOH) factors influencing utilization. The purpose of the model will be to alert the healthcare systems and government organizations by identifying the reasons for overutilization of the medical services among the people in a particular community. Also, the novel coronavirus disease 2019 (COVID-19) developed in Whunan city, China has …

Identity Construction In The Yoruba Group Project Abroad: Discourse Analysis Of Language Use, Tawakalitu Odunayo Lasisi

LSU Master's Theses

This research examines the experiences of five Nigerian Americans who participated in the Yoruba Group Project Abroad in the year 2018. After taking classes on Yoruba language at the basic, intermediate and advanced levels in their various universities here in the US, the students traveled to Nigeria in the summer of 2018 to immerse themselves in the native speakers’ environment in Ibadan, Nigeria. While in Ibadan, they were paired with Nigerian host families (Yoruba speakers) in order to have an overarching immersive experience. These students constitute the population of this research. Using a qualitative research method and an in-depth online …

Micro- And Macroevolution Of Drab Plumage Color In Birds, Rafael Marcondes

LSU Doctoral Dissertations

I address the evolution of drab bird colors at micro- and macroevolutionary scales. I use as a study system the Furnariida, a clade of >600 Neotropical passerine species that, despite tremendous ecological and morphological diversity, are colored almost exclusively in shades of brown and grey produced by melanin pigments.

In chapters two and three, I took a macroevolutionary approach and showed that (1) plumage colors in the Furnariida evolve at similar rates in a monochromatic clade, males of a dichromatic clade, and females of a dichromatic clade; (2) ventral plumage color evolves faster than dorsal; (3) bird species that occupy …

A Modular System For Treating Moving Anatomical Targets With Scanned Ion Beams At Multiple Facilities: Pre-Clinical Testing For Quality And Safety Of Beam Delivery, Michelle Lis, Wayne Newhauser, Marco Donetti, Moritz Wolf, Timo Steinsberger, Athena Paz, Marco Durante, Christian Graeff

Faculty Publications

Background: Quality management and safety are integral to modern radiotherapy. New radiotherapy technologies require new consensus guidelines on quality and safety. Established analysis strategies, such as the failure modes and effects analysis (FMEA) and incident learning systems have been developed as tools to assess the safety of several types of radiation therapies. An extensive literature documents the widespread application of risk analysis methods to photon radiation therapy. Relatively little attention has been paid to performing risk analyses of nascent radiation therapy systems to treat moving tumors with scanned heavy ion beams. The purpose of this study was to apply a …

A Systematic Multiscale Investigation Of Nanoparticle-Assisted Co2 Enhanced Oil Recovery (Eor) Process For Shale Oil Reservoirs, Dayo A. Afekare

LSU Doctoral Dissertations

Shale oil reservoirs are prolific on the short term due to hydraulic fracturing and horizontal drilling but experience significant production decline, leading to poor ultimate recovery and leaving billions of barrels of oil buried in the ground. In this study, a systematic multi-scale investigation of an enhanced oil recovery (EOR) process using relatively inexpensive silicon dioxide nanoparticles and carbon dioxide for shale oil reservoirs was conducted. Using the Tuscaloosa Marine Shale (TMS) as a case study, aqueous dispersions of nanosilica in conjunction with CO₂ were investigated at nano-to-core scales. At the nanoscale, atomic force microscope was used to investigate …

The Perceived Importance And Ability Of Secondary Agricultural Education Teachers Regarding Accommodating Students With Exceptionalities: A Mixed Methods Study, Raegan Ramage

LSU Master's Theses

Each year, the number of students who have a documented disability in public schools in the U.S. has increased. However, SBAE instructors continue to identify a lack of confidence when teaching students with exceptionalities. This lack of confidence is exacerbated by a lack of professional development opportunities and preservice training offered by teacher preparation programs regarding teaching students with special needs. To better understand this complex issue, this mixed methods investigation sought to describe Louisiana SBAE instructors’ previous educational experiences focused on accommodating students with special needs and describe their desired professional development opportunities regarding accommodating students with special needs. …

Mapping Louisiana's Missing: Spatiotemporal Profiling Of Louisiana's Missing Persons- An Experimental Application Of Geographic Information Systems And Forensic Anthropology, Liam J. Johnson

LSU Master's Theses

The growing number of unresolved unidentified and missing persons cases in the United States is this nation’s ‘silent mass disaster’ (Ritters, 2007). In addition to contextualizing biocultural traits of these cases, forensic anthropologists are uniquely qualified to address this underrecognized humanitarian crisis due to their proven ability to bridge conflicting stakeholders in often complex sociopolitical environments and to create improved opportunities for community collaboration. This project explores local and state demographic trends of missing persons cases and how this information can be used to assist investigative agencies with their missing population, analyzes gaps in identification data, and selects optimal locations …