Digital Commons Network^™

Nonnative Phragmites Australis Invasion Into Utah Wetlands, Andrew Kulmatiski, Karen H. Beard, Laura A. Meyerson, Jacob R. Gibson, Karen E. Mock

Western North American Naturalist

Phragmites australis (Cav.) Trin. ex Steud. (common reed), already one of the world’s most widespread plant species, has realized rapid range expansion in coastal wetlands of North America in the past century, but little is known about P. australis range expansion in inland wetland systems. We used genetic analyses, aerial photographs, field surveys, and a greenhouse experiment to study the extent and mechanism of nonnative P. australis invasion of Utah wetlands. We collected and genetically analyzed 39 herbarium samples across the state and 225 present-day samples from northern Utah’s major wetland complexes. All samples collected before 1993 and all samples …

Rock Outcrops Harbor Native Perennials In Type-Converted Coastal Scrub, Robert J. Steers

Western North American Naturalist

Type-conversion of coastal scrub to exotic annual grassland has been extensive in certain parts of southern California, especially in drier inland locales. Field observations suggest that rock outcrops harbor native perennials associated with coastal scrub vegetation after conversion to exotic annual grassland has occurred. Surveys were conducted to test this observation. In addition, measures of fossorial mammal disturbance, soil depth, exotic annual plant abundance, and soil moisture were collected and used to infer potential mechanisms that may influence patterns of native and exotic vegetation. Results showed that larger outcrops are associated with more native perennial species than smaller outcrops, consistent …

European Earwig, Forficula Auricularia L. (Dermaptera: Forficulidae), At The Hanford Reach National Monument, Washington State, Richard S. Zack, Dennis Strenge, Peter J. Landolt, Chris Looney

Western North American Naturalist

The European earwig, Forficula auricularia L., was surveyed using pitfall traps at 3 sites at the Hanford Reach National Monument in south central Washington State. Pitfall traps were collected weekly from April 2002 through April 2003. The earwig was consistently taken during all months of the year at a disturbed, weedy site along the Columbia River (White Bluffs Ferry site) but was rare or not collected in 2 less-disturbed shrubsteppe habitats. Highest numbers occurred during April–May, when immatures accounted for the majority of the catch; immatures reached the adult stage during mid-July, and the species is univoltine at the site. …

Trapping Mammals In A Cautious World: The Effect Of Disinfectants On Trap Success, J. A. Wilson, K. E. Mabry

Western North American Naturalist

Disinfecting traps that have captured small mammals is one recommendation for preventing occurrence of hantavirus infection; however, the potential effects of disinfection on small mammal trappability have not been investigated thoroughly. We conducted an experiment to compare the effects of 2 disinfectants (Lysol^® and household bleach) on the trappability of 4 small mammal species (Peromyscus maniculatus, Neotamias spp., and Spermophilus lateralis). We established triplicate trap grids in 2 forest types (red fir and mixed conifer), each consisting of a 6 × 6 array of Sherman live-traps placed at 10-m intervals. Traps were given 1 of 3 treatments: …

Rediscovery Of The Neotoma Population On Datil [Turner] Island, Sonora, México, Sergio Ticul Álvarez-Castañeda, Anahid Gutierrez, Mayra De La Paz

Western North American Naturalist

On Datil [Turner] Island in the Gulf of California, we rediscovered a population ofNeotoma varia, previously thought to be extinct. We captured 5 specimens: 1 was kept as a voucher, and 4 were examined and released. Analysis of previous surveys indicates that N. varia is not common on the island and occupies a very restricted range.


Recolectamos especímenes de Neotoma varia de la Isla Dátil en el Golfo de California, una población anteriormente considerada ya extinta. De los cinco especímenes que recolectamos, cuatro se pusieron en libertad. El análisis de muestreos previos indica que N. varia no es común …

Pathology Of An Unusual Lumbar Condition In A Young Black Bear (Ursus Americanus) From The Big Bend Region Of Trans-Pecos Texas, Frederick B. Stangl Jr., Dana R. Mills, Michael W. Haiduk

Western North American Naturalist

The skeleton of a young American black bear (Ursus americanus) possessing asymmetrical distortions of the 5 caudalmost lumbar neural spines was recovered from west Texas. We attribute this abnormality, presumed to be congenital, to the absence or atrophy of the right multifidus muscle straddling L3 and to the series of compensatory muscle adjustments required to maintain spinal alignment. This finding may have important management implications for black bears in Texas, given the possibility that our specimen originates from a partially isolated population.


El esqueleto de un oso negro juvenil (Ursus americanus) con distorsiones asimétricas de las …

Costs Of Treating Depression With Individual Versus Family Therapy, Sareta Dobbs Head

Theses and Dissertations

Marital discord contributes to the development and continuation of depression and to the recurrence of depressive episodes for those in troubled relationships. Early research suggests that family therapy may reduce the severity and frequency of depressive episodes through modification of family interactional patterns. This would result in a reduction in the cost of treating depression. This study summarizes the literature linking family dynamics with depression. Then,using a sample taken from a large health maintenance organization, data was statistically analyzed to measure the effectiveness of both individual and family therapy as delivered by different types of mental health professionals. Results indicated …

A Reusable Persistence Framework For Replicating Empirical Studies On Data From Open Source Repositories, Scott Bong-Soo Chun

Theses and Dissertations

Empirical research is inexact and error-prone leading researchers to agree that replication of experiments is a necessary step to validating empirical results. Unfortunately, replicating experiments requires substantial investments in manpower and time. These resource requirements can be reduced by incorporating component reuse when building tools for empirical experimentation. Bokeo is an initiative within the Sequoia Lab of the BYU Computer Science Department to develop a platform to assist in the empirical study of software engineering. The i3Persistence Framework is a component of Bokeo which enables researchers to easily build and rapidly deploy tools for empirical experiments by providing an easy-to-use …

Spiritually Strengthening Learning Environments In Higher Education, Seth A. Martinez

Theses and Dissertations

This qualitative thesis brings attention to a phenomenon that is largely neglected in the world of higher education: the faith-intellect relationship. The main purpose of this multiple-case study is to provide a rich description of what a highly spiritually strengthening learning environment in higher education looks and feels like to those participating. In essence, the researcher provides a vicarious experience for the reader. A learning environment that fosters spiritually strengthening experiences for the students is one in which the student-teacher interactions are of high quality and in which the attributes possessed by both the professor and students are manifest through …

Capture And Access Of Multiple Screen Presentations, Kelv H. Cutler

Theses and Dissertations

Knowledge transferred during meetings is often ephemeral in nature and thus must be captured if it is to be retained. Ideally, a capture solution should be able to 1) accommodate any number of screens without sacrificing image quality and 2) allow dynamic access to a complete media capture while the capture is taking place. Both students and employees can benefit from the information captured during the lectures and meetings for enhanced discussion and afterward for knowledge retention. Current systems do not support multiple screen capture well, and no system supports dynamic access to the active meeting capture during the meeting. …

Gender And Color Specific Differences In Event Related Potentials, Abhishek Trikha

Theses and Dissertations

This project analyzed gender and color-specific differences in event-related potentials (ERPs). Previous studies have shown that males process color differently than females. In a recent study, sex differences were found in ERPs during a visual object recognition task. There were higher EEG amplitudes in females (especially P300) than males. Significant sex and color-specific differences have been found in diseases involving altered dopamine (DA) machinery. Thus, we analyzed differences between ERPs in males vs females during a color task. We also compared the color-specific differences in ERPs between males and females. Males and females participated in EEG recording sessions for 2 …

A Study Of Language Attitudes Concerning The De-Affication Of /Tʃ/, The Pronunciation Of The /Tɾ/ Consonant Cluster, And The Use Of The Definite Article With Proper Names In Santiago, Chile, Ian J. Dixon

Theses and Dissertations

This thesis analyzes the linguistic attitudes of natives from Santiago, Chile regarding three linguistic phenomena present in Chilean Spanish of Santiago: the fricative realization of the Spanish /tʃ/, the assibilated realization of /tɾ/ and the use of the definite article before the first names of people. The social factors of age, sex and socioeconomic status are acknowledged as possible factors contributing to the linguistic attitudes of the 64 participants interviewed.

Chemical Vapor Deposition Of Silanes And Patterning On Silicon, Feng Zhang

Theses and Dissertations

Self assembled monolayers (SAMs) are widely used for surface modification. Alkylsilane monolayers are one of the most widely deposited and studied SAMs. My work focuses on the preparation, patterning, and application of alkysilane monolayers. 3-aminopropyltriethoxysilane (APTES) is one of the most popular silanes used to make active surfaces for surface modification. To possibly improve the surface physical properties and increase options for processing this material, I prepared and studied a series of amino silane surfaces on silicon/silicon dioxide from APTES and two other related silanes by chemical vapor deposition (CVD). I also explored CVD of 3-mercaptopropyltrimethoxysilane on silicon and quartz. …

Modeling And Testing Of Dna Motion For Nanoinjection, Regis Agenor David

Theses and Dissertations

A new technique, called nanoinjection, is being developed to insert foreign DNA into a living cell. Such DNA transfection is commonly used to create transgenic organisms vital to the study of genetics, immunology, and many other biological sciences. In nanoinjection, DNA, which has a net negative charge, is electrically attracted to a micromachined lance. The lance then pierces the cell membranes, and the voltage on the lance is reversed, repelling the DNA into the cell. It is shown that DNA motion is strongly correlated to ion transport through a process called electrophoresis. Gel electrophoresis is used to move DNA using …

Gene Network Inference And Expression Prediction Using Recurrent Neural Networks And Evolutionary Algorithms, Heather Y. Chan

Theses and Dissertations

We demonstrate the success of recurrent neural networks in gene network inference and expression prediction using a hybrid of particle swarm optimization and differential evolution to overcome the classic obstacle of local minima in training recurrent neural networks. We also provide an improved validation framework for the evaluation of genetic network modeling systems that will result in better generalization and long-term prediction capability. Success in the modeling of gene regulation and prediction of gene expression will lead to more rapid discovery and development of therapeutic medicine, earlier diagnosis and treatment of adverse conditions, and vast advancements in life science research.

Gene Flow And Dispersal Of The Flatworm, Polycelis Coronata: A Multiscale Analysis, Jeffrey N. Moore

Theses and Dissertations

We determined genetic variance and gene flow across multiple scales (reaches, headwater segments, and catchments) to examine the dispersal ability of the flatworm Polycelis coronata along the Wasatch Mountains of Utah. Multiple models predict patterns of genetic differentiation in stream invertebrates based on dispersal traits and the spatial connectivity of the habitat. The stream hierarchy model predicts genetic differentiation to be low and gene flow to be high between reaches nested in segments, moderate among segments within catchments, and differentiation to be highest and gene flow lowest among catchments, whereas the headwater model predicts the greatest differentiation between headwater segments. …

The Faith Instinct: How Religion Evolved And Why It Endures, Brian Jackson, Nicholas Wade

BYU Studies

"People of faith may not warm to the view that the mind's receptivity to religion has been shaped by evolution," writes Nicholas Wade, science writer for the New York Times, in his new book The Faith Instinct. If religion evolves with cultural circumstances, then it loses some of its immutable, supernatural qualities. On the other hand, atheists "may not embrace the idea that religious behavior evolved because it conferred essential benefits on ancient societies and their successors." If we accept the proposition that faith endures because cultures select it (perhaps unconsciously) as a necessary attribute of their survival, then we …

The Hoarse Whisperer, David M. Kirkham

BYU Studies

In this personal essay, David Milo Kirkham recounts his interactions with the animal kingdom. From his early banter with his neighbor's sheep and his trapping and killing of nuisance skunks in his rural community to his later encounter in the Bavarian Alps with a beautiful red fox, Kirkham both entertains and provokes serious thought about our relationship with God's other creatures. "Who are the animals?" he asks. "Our relationship to them seems complex. I know some people see it in black and white: kill them, dominate them, or protect them all at any cost. But to me it is complex. …

High Flow Air Sampling For Field Detection Using Gas Chromatography-Mass Spectrometry, Jacolin Ann Murray

Theses and Dissertations

The ability to rapidly detect and identify hazardous analytes in the field has become increasingly important. One of the most important analytical detection methods in the field is gas chromatography-mass spectrometry (GC-MS). In this work, a hand-portable GC-MS system is described that contains a miniature toroidal ion trap mass analyzer and a low thermal mass GC. The system is self-contained within the dimensions of 47 x 36 x 18 cm and weighs less than 13 kg. Because the instrument has a small footprint, it was used as the detector for an automated near-real-time permeation testing system. In permeation testing, materials …

Minimizing Base Column Demands In Multi-Story Buckling Restrained Braced Frames Using Genetic Algorithms, Christopher Hiroshi Yeates

Theses and Dissertations

Most structural optimization procedures focus on minimizing the total volume of steel in an attempt to reduce overall costs. However, many other factors can have an effect on the overall cost of a structure. Base column demands in particular, can affect base plate sizes, anchorage, and foundation design. Researchers have found that present methods for estimating column demands are too conservative. Nonlinear time history analyzes were conducted on buckling-restrained braced frames of six heights. Optimized results were found considering three ductility constraints and two optimization objectives. The two optimization objectives were minimized total brace area and minimized base column demands. …

Quantitative Template For Subtyping Primary Progressive Aphasia, Marsel Mesulam, Christina Wieneke, Emily Rogalski, Derin J. Cobia, Cynthia Thompson, Sandra Weintraub

Faculty Publications

Objective—To provide a quantitative algorithm for classifying primary progressive aphasia (PPA) into agrammatic (PPA-G), semantic (PPA-S) and logopenic (PPA-L) variants, each of which is known to have a different probability of association with Alzheimer’s disease (AD) versus frontotemporal lobar degeneration (FTLD).

Design—Prospectively and consecutively enrolled 16 PPA patients tested with neuropsychological instruments and magnetic resonance imaging (MRI).

Setting—University medical center. Participants—PPA patients recruited nationally in the USA as part of a longitudinal study.

Results—A two-dimensional template, reflecting performance on tests of syntax (Northwestern Anagram Test) and lexical semantics (Peabody Picture Vocabulary Test), classified all 16 patients in concordance with a …

Measured And Estimated Ground Reaction Forces For Multi-Segment Foot Models, Dustin A. Bruening, Kevin M. Cooney, Frank L. Buczek

Faculty Publications

Accurate measurement of ground reaction forces under discrete areas of the foot is important in the development of more advanced foot models, which can improve our understanding of foot and ankle function. To overcome current equipment limitations, a few investigators have proposed combining a pressure mat with a single force platform and using a proportionality assumption to estimate subarea shear forces and free moments. In this study, two adjacent force platforms were used to evaluate the accuracy of the proportionality assumption on a three segment foot model during normal gait. Seventeen right feet were tested using a targeted walking approach, …

Humphry Davy: Science, Authorship, And The Changing Romantic, Marianne Lind Baker

Theses and Dissertations

In the mid to late 1700s, men of letters became more and more interested in the natural world. From studies in astronomy to biology, chemistry, and medicine, these "philosophers" pioneered what would become our current scientific categories. While the significance of their contributions to these fields has been widely appreciated historically, the interconnection between these men and their literary counterparts has not. A study of the "Romantic man of science" reveals how much that figure has in common with the traditional "Romantic" literary figure embodied by poets like William Wordsworth and Samuel Taylor Coleridge. This thesis interrogates connections between Romantic …

Pyaline: Automatically Growing Language Family Trees Using The Aline Distance, Paul A. Huff

Theses and Dissertations

Several methods for determining a numerical distance between languages have been proposed in the literature. In this thesis I implement one of them, the ALINE distance, and develop a methodology for comparing its results with other language distance metrics. I then compare it with a leading distance metric, the LDND distance, proposed by the ASJP project.

Parental Involvement And Academic Achievement Among Children Of Immigrants, Wade Clinton Jacobsen

Theses and Dissertations

Using Bourdieu's model of social and cultural reproduction, I examine student achievement and parental involvement levels across seven immigrant nationalities: Cambodian, Cuban, Filipino, Laotian, Mexican, Nicaraguan, and Vietnamese. I then analyze the relationships between five parental involvement types and GPA, while controlling for student, family, and school characteristics. Finally, I test for interaction effects to examine variations across groups. Results point to parent expectations as a strong predictor of student success, especially among Cubans, Filipinos, and Vietnamese, while other dimensions of parental involvement have little or no effect. Bourdieu's model may not be adequate among immigrant parents and their children …

Proteoliposome Proton Flux Assays Establish Net Conductance, Ph-Sensitivity, And Functional Integrity Of A Novel Truncate Of The M2 Ion "Channel" Of Influenza A, Emily Peterson

Theses and Dissertations

A novel truncate of Influenza A M2 protein (residues 22-62), incorporated into a uniquely tailored proteoliposome proton uptake assay, demonstrated proton flux more characteristic of an ion transporter than a traditional ion "channel." The liposome paradigm was essential for testing the conductance activity of this M2 truncate at a range of extraphysiological pHs appropriate for channel vs. transport function determination. In addition to transporter-typical proton flux, M2(22-62) showed the key characteristics of functional integrity: selective proton uptake into liposomes and block of uptake by amantadine. Two sets of proteoliposome proton flux assays were carried out, Set 1 at pH values …

Antimicrobial And Anticancer Activity Of Essential Oils From Guatemalan Medicinal Plants, Andrew B. Miller

Theses and Dissertations

Guatemalan medicinal plants were collected and screened for the presence of essential oils using steam distillation. Oil was found in 63 species from 24 families and was tested in tube dilution assays for activity against Escherichia coli, Staphylococcus aureus, Streptococcus mutans, Lactobacillus acidophilus and Candida albicans. Several essential oils were highly active with 20 instances of oils inhibiting the microbes at an MIC of 0.31 µl/ml. Oils were also tested against cancerous and established cell lines using a 15% (v/v) agar-media which was developed to improve essential oil solubility. Assays were performed against three cancer lines: …

Characterization Of The Lkb1-Mo25-Strad Ampkk Complex In Adult Mouse Skeletal Muscle, Cody Don Smith

Theses and Dissertations

In liver tissue, the AMP-activated protein kinase kinase (AMPKK) complex was identified as the association of LKB1, MO25α/β, and STRADα/β proteins; however, this complex has yet to be characterized in skeletal muscle. In this report, we demonstrate the expression of the LKB1-MO25-STRAD AMPKK complex in adult skeletal muscle, confirm the absence of mRNA splice variants, and report the relative mRNA expression levels of these complex-forming proteins. To facilitate this characterization we used control (ctrl) and muscle-specific LKB1 knockout (LKB1-/-) mice. LKB1 detection in untreated ctrl and LKB1-/- muscle lysates revealed two protein bands at approximately 50 and 60 kDa; although, …

Work Towards The Isolation And Characterization Of The Muscle Isoform Of Glucose 1,6-Bisphosphatase, Caleb J. Hiller

Theses and Dissertations

Glucose 1,6-bisphosphate is an important small molecule involved in the regulation of glycolysis. Four enzymes synthesize this compound. One enzyme is known to degrade it, glucose 1,6-bisphosphatase. Other groups have produced work that indicates that there are two isoforms of this enzyme, one predominant in the brain and one in the muscle. This thesis contains the work performed in attempts to isolate and characterize the muscle isoform of glucose 1,6-bisphosphatase. While this enzyme was not isolated, much was learned about it and the results from this work may help in the future identification of this enzyme.

Effects Of Diabetic State And Gender On Pro-Inflammatory Cytokine Secretion By Human Macrophages Infected With Burkholderia Pseudomallei, Annette J. Blam

Theses and Dissertations

Burkholderia pseudomallei is a gram-negative opportunistic soil pathogen that causes the life-threatening disease melioidosis. It is endemic in Northern Australia and Southeast Asia but can be found throughout many other regions in the world. Diabetes mellitus is a predisposing risk factor for infection with this organism and it has been demonstrated that diabetic males are particularly susceptible to severe infection. Previous research suggested that monocytes isolated from the whole blood of diabetic males demonstrated a decreased ability to produce the proinflammatory cytokines IL-1β and IL-8. We hypothesized that monocyte-derived macrophages from diabetic males would also secrete lower levels of pro-inflammatory …