Digital Commons Network^™

Historic Patterns Of Growth And Destruction In Nj Seagrass Meadows, Masen Eck

Theses, Dissertations and Culminating Projects

Seagrass meadows are one of the many habitats worldwide under threat from human disturbance and worsening climate conditions. This habitat provides many critical ecosystem services to coastal environments, which is why conserving and restoring seagrass meadows is critical. This study investigates the long-term success and failures from several eelgrass restoration sites in Barnegat Bay, New Jersey. Aerial imagery from multiple years were digitized in ArcGIS to assess restoration trajectories over time. Three of the sites were assessed over a period of twelve years (2012-2023), and one site was assessed twice (2021 and 2023). Results from these time series analyses showed …

The Effect Of Liquid Foliar Fertilizer And Pruning Combinations On The Growth Of Productive Phase Arabica Coffee Plants (Coffea Arabica L.), Syifa Djuita Putri, Alvito Krishna Balapradhana, Mira Ariyanti, Intan Ratna Dewi Anjarsari, Yudithia Maxiselly

Jurnal Kultivasi

In recent years, productivity decline in arabica coffee has become a real issue in Indonesia. This decay has been brought about by various external and internal factors that are beyond human control. Various factors, including suboptimal cultivation practices, take part in this process. The objective of the present study was to evaluate the effect of pruning combined with foliar fertilizer application (coconut water and sugarcane molasses) and 6-benzylaminopurine (BAP) on the vegetative growth of arabica coffee plants during the production phase. The research was conducted at Ciparanje Experimental Field, Universitas Padjadjaran, using a randomized complete block design with seven treatments …

Discovering The Genetics Underlying Speciation Traits In Heuchera (Coral Bells), Tajinder Singh

Honors Theses

Hybridization is a key evolutionary mechanism for generating biological diversity, ultimately shaping diversification and adaptation of plant lineages in natural and agroecosystems.  Our understanding of the frequency, distribution, and significance of hybridization is rapidly increasing, but the external driving forces that dictate why certain species hybridize, and others do not remain obscure. The physical traits that shape gene flow and trait sharing among species are likely to be among the key factors that directly control hybridization. Gene flow in most plants is mediated by pollinating insects and thus by pollination syndromes, which are suites of floral traits that have evolved …

Morphology And Bioactive Compounds Of Gurmar (Gymnema Sylvestre) With Potential As Antidiabetics, Neny Novita Yuliany, Abdillah Maulana Farhan, Putry Lazimatu Ziyaroh, Edia Fitri Dwinianti, Husnatun Nihayah, Mukhamad Su'udi

Jurnal Kultivasi

The medicinal plant Gymnema sylvestre is widely known for its ability to lower blood sugar levels. This study reviewed the physical characteristics and bioactive compounds of G. sylvestre sourced from different regions, emphasizing its potential as an antidiabetic agent. Morphological analysis includes leaf structure, trichome presence, and other anatomical features, which can influence the plant's chemical profile. Phytochemical analysis, performed using techniques like GC-MS, identifies key bioactive compounds such as saponins, flavonoids, and gymnemic acids, which contribute to its hypoglycemic effect. The findings indicate that regional variations can affect the concentration and presence of these compounds, suggesting that environmental factors …

Optimization Of Physalis Angulata L. Callus Induction And Salinity-Induced Antioxidant Production, Firstian Naufal Sistyananda, Erni Suminar, Anne Nuraini, Muhamad Kadapi, Murgayanti, Syariful Mubarok, Rahmat Budiarto, Eddy Renaldi, Kusumiyati

Jurnal Kultivasi

Groundcherry (Physalis angulata L.) is a plant with many medicinal potentials due to its rich secondary metabolites such as phenolic and flavonoid. However, conventional agriculture practices are still limited, especially in Indonesia. This study was divided into two stages. The first stage was conducted to determine optimal 6-BAP and 2,4-D combination for callus induction, while the second stage was conducted to determine callus phenolic, flavonoid, and antioxidant response to salinity stress. The first stage was arranged in factorial completely randomized design with two factors: 6-BAP (0, 2, and 4 mg/L) and 2,4-D (0, 0.5, 1, and 1.5 mg/L). The second …

Estimating Leaf Area In Velvetleaf (Limnocharis Flava) And Kangkong (Ipomea Aquatica): A Precise And Non-Destructive Approach For Wetland Vegetables, Anggrika Riyanti, Benyamin Lakitan, Momon Sodik Imanudin, Muhammad Yazid

Jurnal Kultivasi

Developing a leaf-area estimation model for vegetable cultivars in wetlands is essential to optimizing agricultural cultivation practices. This study aims to develop a non-destructive model for leaf area estimation in wetland vegetable cultivars (velvetleaf (Limnocharis flava) and kangkong (Ipomoea aquatica)) using regression-based models. The plants were cultivated in a wetland system. Measurements of leaf length and width were taken on all leaves of each plant, using the product of length and width (L×W) as predictor. The regression models for estimating leaf area were adjusted from linear, zero-intercept linear, quadratic, and power. The optimal model was evaluated using the determination coefficient …

Growth And Yield Response Of Shallots To Npk, Nk, And Humic Acid Under Different Mycorrhiza Application, Alfu Laila, Endang Sulistyorini

Jurnal Kultivasi

One strategy to increase shallot production is the utilization of microorganisms in the soil, such as arbuscular mycorrhizal fungi (AMF), which is applied together with fertilizer. This research aimed to investigate the effects of different nutrient inputs and mycorrhizal association on the growth and yield of shallots. This study used a split-plot design with three replications as blocks. The main plot included four treatments: no nutrient inputs, NPK fertilizer, NK fertilizer, and humic acid, while the subplot involved the mycorrhiza application (with or without). The measured variables included growth (plant height and number of leaves) and yield (fresh weight and …

Response Of Chlorophyll, Morphology, And Yield Of Several East Java Superior Soybean (Glycine Max L.) Varieties To Levels Of Salinity, Puji Lestari Tarigan, Ida Retno Moeljani, Fadila Suryandika, Hadi Munarko

Jurnal Kultivasi

Soybean production has been extended to saline areas. This development is a strategy to expand planting areas to suboptimal land to increase worldwide production. To support cultivation in these locations, it is necessary to develop superior varieties that are resistant to salinity and provide supporting technological inputs. In saline conditions, soybeans may face stress that leads to morphological, physiological, and yield disturbances. Consequently, the response of several soybeans in East Java should be observed. This study is a pot experiment and arranged in a Factorial Completely Randomized Design (CRD) consisting of two factors, soybean varieties and NaCl concentrations. The treatments …

Growth Response And Yield Performance Of Upland Rice Intercropped With Legumes, Sevirasari, Wilujeng Hidayati, Zulfa Az Zahroh, Bayu Febriansyah, Marifatul Apri Fiana, Nabilla Najwa Rochmaniah, Khavid Faozi, Lafi Na'imatul Bayyinah, Joko Maryanto, Ahmad Fauzi

Jurnal Kultivasi

Intercropping patterns in upland rice must be carefully managed to prevent excessive competition among crops. This research aimed to determine the ideal proportion of upland rice–legume intercropped and legume types for rice growth and yield. The research was conducted in Mersi, East Purwokerto, Banyumas, Central Java, from April–August 2025. The study was arranged in a split-plot design consisting of a main factor in form of the proportion of upland rice to legumes (1:1, 2:1, and 3:1), and a sub-factor, i.e., legume types (peanuts, mung beans, and soybeans). The data were analyzed using Analysis of Variance and Tukey's HSD test at …

Growth Of Vanilla Cuttings Under Modified Acid Soil Media And Application Of Several Plant Growth Regulators, Rifqi Raditya Kurniawan, Yugi Rahayu Ahadiyat, Etik Wukir Tini

Jurnal Kultivasi

This research aimed to optimize the growth of vanilla (Vanilla planifolia) cuttings in acid soils by modifying the growing media and applying several types of plant growth regulators (PGRs). Several types of PGRs, including synthetic compounds such as indole-3-acetic acid (IAA) and 6-benzylaminopurine (BAP), as well as natural extracts from shallot (Allium ascalonicum L.) and moringa leaves (Moringa oleifera), were tested to enhance plant performance in acid-growing conditions. The primary objectives were to determine the optimal soil amendment formula and the most effective PGR type for promoting vanilla growth, and to develop a measurable, easy-to-use PGR formulation accessible to farmers. …

Effects Of Phosphate-Solubilizing Fungi On Phosphorus Availability, Retention, And Soil Chemical Properties In Shallot Cultivated On Andisols Of North Sumatra, Agustina Erlinda Marpaung, Tengku Sabrina, Abdul Rauf, Dwi Ningsih Susilowati

Jurnal Kultivasi

The availability of phosphorus (P) is one of the main limiting factors for plant productivity in Andisol soils due to the strong fixation of P by allophane clay minerals, aluminum and iron oxides. Giving the phosphate solubilizing fungi (PSF) is an alternative to increase available P which plants can use to increase the yield. This study aimed to evaluate the effectiveness of phosphate-solubilizing fungi (PSF) in improving P availability on Andisol. The experiment used a block randomized design (BRD) with three replications. The first factor is Andisol soil origin (Soil 1 and Soil 2) and the second is isolate of …

Breeding For Diverse Color And Protein Quality In Popcorn And Sweet Corn, Jonathan Niyorukundo

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Sweet corn and popcorn are important crops consumed globally as vegetable and snack, respectively. They are deemed healthy foods due to high fiber and carotenoid contents, especially in yellow varieties. Commercial varieties are optimized for high-yielding agronomics, and previous efforts were made to improve specific macro- and micronutrient contents. Both sweet corn and popcorn have poor protein quality due to the inadequate essential amino acids such as lysine and tryptophan. Moreover, commercial varieties are predominantly yellow, thereby offering no diversity of other maize colors, which are potentially healthier and more appealing to the consumer. In this project, we sought to …

Effects Of Soil Amelioration On Wheat Growth, Nutrition, And Soil Microbiome Dynamics In Sandy Soil, Shompa Akter, Sultan Mia, M. Asaduzzaman Prodhan, Gaus Azam, Zakaria Solaiman, Kadambot H M Siddique

Grain and Other Field Crops Research Articles

Purpose Cropping regions in Western Australia (WA) face multiple soil constraints including acidity, nutrient deficiencies, compaction and water repellence, which limit crop productivity. Developing sustainable soil management strategies is therefore crucial. This study evaluates the effects of soil amendments—lime, gypsum, clay, compost, and synthetic fertilisers on soil health, nutrient availability, microbial function and wheat production. Methods A glasshouse experiment was conducted using undisturbed soil cores collected in a polyvinyl chloride (PVC) column from a field trial site where four treatments were applied: Control (no amendment), CLG (clay, lime, gypsum), CLG + NPK (CLG + nitrogen, phosphorus, and potassium fertilisers), and …

Effects Of Spatially Targeted Fertilizer Strategies On Canopy Growth Across Contrasting Tart Cherry Orchard Sites, Kurt Wedegaertner, Brent Black, Matt Yost, Grant Cardon

Plants, Soils and Climate Student Research

Variable-rate fertilization is increasingly promoted in perennial orchard systems, but its effectiveness remains difficult to predict because tree responses are often inconsistent and strongly conditioned by site-specific constraints. To address this, we evaluated soil-based and vigor-based zoning frameworks across four commercial tart cherry (Prunus cerasus) orchards representing contrasting soil conditions, canopy structures, and management histories. Within each orchard, management zones were defined using either soil apparent electrical conductivity (ECa) or satellite-derived canopy vigor. Fertilization strategies were implemented by varying fertilizer application timing among zones using split-application approaches while maintaining a constant total fertilizer rate. Tree-level canopy structure was …

Growth Effects Of Gibberellin Acid On Seteria Viridis, Isabella Calmet, Jamie Karase, Riley Massey, Allsion Schrumpf, Molly Suppa

2026 Student Academic Showcase

This study examined the effects of gibberellic acid (GAs) on growth in dwarf mutant families of Setaria viridis, a model grass species used to investigate hormone-regulated plant development. Dwarf phenotypes in grasses are often associated with disruptions in gibberellin biosynthesis or signaling, making them ideal for evaluating hormone response. Eight mutant families were analyzed using a paired experimental design, where each family was equally distributed between a control group and a GAs-treated group. Seeds were planted in pots with four seeds per pot, maintaining consistent representation of each family across treatments. During the third week of growth, the treatment group …

On The Transport Of Chloroplast Lipids, Cailin Smith

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Chloroplasts are green, photosynthetically active organelles ubiquitous to the plant kingdom. Owing to their cyanobacterial origin, chloroplasts consist of three membranes: the outer envelope, the inner envelope, and the thylakoid, the latter of which is the site of the light-dependent reactions of photosynthesis. Not only do the lipids that make up these membranes delineate aqueous compartments, but they also respond dynamically to developmental and environmental cues, constitute the matrix that scaffolds protein machinery, and even serve as functional components of some proteinaceous complexes. However, while lipids are of vital importance to the structure and function of the chloroplast, the mechanisms …

Evaluating The Impact Of Residential Landscape Audits Using 5-Second Water Use Data, Mahmud Aveek, Camilo J. Bastidas Pacheco, David E. Rosenberg, Jeffery S. Horsburgh, Kelly Kopp, Belize A. Lane

Civil and Environmental Engineering Student Research

We used 5-s water use data to evaluate the effectiveness of residential landscape water audits in summer 2022. Fifty-nine households in two northern Utah cities were monitored for 2–5 weeks before and 3–10 weeks after an audit. We found that the distribution of weekly irrigation volumes postaudit was statistically less than the distribution preaudit (significant at the 1.9E10-5 level). Collectively, the participants reduced their landscape irrigation water use by approximately 379,000 L per week (100,300 gal per week; 0.3 acre-feet per week). We also analyzed changes in irrigation event volume, duration, frequency, and the number of days between events at …

Molecular Adaptation Of Sweet Potato To Martian Soil Simulant: Insights From Mrna And Long Non-Coding Rna Analyses, Subramanyam Reddy Chinreddy, Karthik Chinnannan, Purushothaman Natarajan, Vaibhavi Patel, Gwonjin Lee, Manohar Chakrabarti, Padma Nimmakayala, Umesh K. Reddy

School of Integrative Biological & Chemical Sciences Faculty Publications

Introduction: Understanding how crops adapt to extraterrestrial environments is essential for sustainable space agriculture. Sweet potato (Ipomoea batatas), a nutritionally rich and stress-resilient crop, is a promising candidate for cultivation under Martian-like conditions, characterized by high salinity, heavy metal contamination, and poor water retention.

Objective: This study aimed to elucidate the molecular mechanisms underlying sweet potato adaptation to Martian soil analog conditions using Mars Global Simulant-1 (MGS-1).

Methods: Leaf, shoot, and storage root tissues of sweet potato grown in MGS-1 were subjected to RNA sequencing. Differentially expressed mRNAs and long non-coding RNAs (lncRNAs) were identified, and functional enrichment analyses were …

High Germinability Can Facilitate Recovery Of Adelia Vaseyi (Euphorbiaceae), An Imperiled Tamaulipan Thornscrub Shrub, Saroj Dhakal, Bashira Chowdhury, Alejandro Fierro-Cabo

School of Earth, Environmental, & Marine Sciences Faculty Publications

While critical to maintaining dryland biodiversity and drought resilience, reforestation has been limited in subtropical dry forests because of knowledge gaps in seed biology that must be filled to upscale seedling production and ensure recovery of imperiled endemic plants. We characterized seed germination, dormancy, and storage needs for Adelia vaseyi, a threatened endemic shrub commonly included in planting mixes to restore Tamaulipan thornscrub, an imperiled subtropical forest spanning South Texas and Northeastern Mexico. We found A. vaseyi seeds have high germinability (82.0%) and a short mean germination time (3.04 ± 0.08 days). A delia vaseyi seed does not appear …

Weed Seed Burial And Long-Term Viability Following Soil Inversion, Catherine Borger, Sultan Mia, Gaus Azam, Stephen Davies

Grain and Other Field Crops Research Articles

Strategic soil inversion is advocated as a periodic weed management strategy, typically recommended every 4 to 8 yr if the goal is to delay the evolution of herbicide resistance. It is assumed that the weed seeds buried during the inversion process will lose viability during this period. However, long-term seedbank persistence following soil inversion has not been investigated. If the buried seeds retain viability, subsequent inversions or other deep-tillage operations may return them to the soil surface, potentially replenishing the weed seedbank. The current study identified 30 sites within the wheatbelt of Western Australia (in 2020) that had previously been …

Comparing The Effect Of Varying Concentrations Of Polytetrafluoroethylene On The Length And Fresh Weight Of Salvinia Minima, Talha Islam

Caroliniana Undergraduate Research Journal

The increasing usage of fluoropolymer pollution in aquatic environments has increased concerns about the ecological consequences of materials such as polytetrafluoroethylene (PTFE), commonly known as Teflon. In the past decade, the usage of Teflon in American homes across the United States has risen by 37.7%, resulting in large amounts of aquatic pollution due to improper disposal of these harmful substances (Török et al., 2020). Although PTFE is chemically inert, its accumulation in freshwater systems can introduce matter that physically interacts with aquatic organisms. This study examined how varying concentrations of PTFE suspensions affect the growth of Salvinia minima, a …

The Highs And Lows Of Life In A Valley: Topographic Controls On Tundra Vegetation In A Warming Arctic, Ruth S. Dunlap

Biology Honors Projects

Topographic heterogeneity structures Arctic plant communities, impacting broader ecosystem responses to climate change. The role of topography in shaping leaf physiological, nutritional, and structural traits in the Arctic is important, yet not well characterized across diverse tundra landscapes. To address these controls, we examined plant community composition and measured leaf traits in a few representative species along a heath-slope-valley gradient in Varanger, Norway. Our results indicated that valleys are more biodiverse, driven by forb and graminoid dominance, whereas slopes and heaths had less diversity with high shrub abundance. Leaf physiology and structural traits did not vary across topographic positions, though …

Sustainable Mitigation Of Microplastic Pollutants Using Native Plant Species, Antonio De Jesus Martinez De La Rosa, Emily Lancaster

Research Papers

Microplastics (MPs) are defined as small plastic particles that come from the degradation of plastics [Ziani et al. 2023], that hold a regular or irregular shape, ranging from 1μm to 5 mm [Campanale et al. 2025]. This diminutive size makes them virtually impossible to remove once released into the environment[Lee et al. 2023]. Furthermore, biological, chemical, and physical processes break MP's further down in the environment, causing them to exist in nano-level sizes (1nm-1μm) [Lee et al. 2023], further exacerbating their threat to critical habitats. However, recent studies have shown MP contamination expands beyond the natural environment as recent studies …

Sustainable Mitigation Of Microplastic Pollutants Using Native Plant Species, Antonio Martinez

Posters - 2026

Microplastics (MPs) are defined as small plastic particles that come from the degradation of plastics [Ziani et al. 2023], that hold a regular or irregular shape, ranging from 1μm to 5 mm [Campanale et al. 2025]. This diminutive size makes them virtually impossible to remove once released into the environment[Lee et al. 2023]. Furthermore, biological, chemical, and physical processes break MP's further down in the environment, causing them to exist in nano-level sizes (1nm-1μm) [Lee et al. 2023], further exacerbating their threat to critical habitats. However, recent studies have shown MP contamination expands beyond the natural environment as recent studies …

Testing The Intermediate Disturbance Hypothesis On Anthropogenic Pressure In Central Alabama, Gavin Terrell

Theses

Biodiversity is fundamental to maintaining ecosystem structure and function globally. Prior to the late 20th century, ecological theory generally predicted that biodiversity would be highest in systems experiencing minimal disturbance. However, Joseph H. Connell challenged this view with the Intermediate Disturbance Hypothesis (IDH), which posits that species diversity peaks at intermediate levels of disturbance and declines under conditions of both low and high disturbance. Although widely cited, the applicability of the IDH to natural systems remains debated, particularly in the context of anthropogenic disturbances and when diversity is measured beyond species richness alone.

This study evaluated the predictions of the …

Agronomic Practices For Climate-Resilient Okra Production In Agroecological Systems: A Review, Samuel Mathu Ndungu, Lokeshwar Kesamreddy, Mathieu A.T. Ayenan, Stephen Othim, Siyabusa Mkuhlani, Yu Hsiang Liu, Amha Besufkad, Wubetu Bihon Legesse, Eric C. Legba, Judith Honfoga, Lukas Pawera

All Peer-Reviewed Publications

Okra is increasingly recognized as a climate-resilient crop within diversified agroecological systems; however, an integrated synthesis of its biophysical, agronomic, and socioeconomic dimensions is lacking. This review consolidates the current knowledge on okra physiology, production ecology, and value chains, with a focus on climate resilience under heat, drought, salinity, pest, and disease pressures. Evidence across regions demonstrates that agroecological practices such as crop diversification, mulching, conservation tillage, integrated pest management, and the use of organic and biological inputs consistently improve soil health, stabilize yields under climatic stress, and reduce dependence on external inputs, although with trade-offs in labor demand and …

Life Line Spring 2026, Jonathan Atwood

Life Line - The Biology Department Newsletter

In This Issue:

Greetings and Farewell: Part Deux; Signs for Trees; Passing of Dr. Mary Gahbauer: a Beloved Friend and Colleague; Dr. Lisa Marr Retires; The Department Welcomes Dr. Ann Feke; Dr. Kevin Svitana Retires; Ms. Donna Rhodeback Retires; Tucker Adds Swan Specimen to Otterbein's Collection; An UnbeLEAFable Year for the Otterbein Chapter of Botanical Society of America; Field Geology Course Visits Death Valley and Beyond; Agar Art: An Unexpected Canvas; Dr. Kevin Svitana Wins the Anderson Award for Outstanding Contribution to Groundwater Research; Introducing Opi: A New Face for Zoo and Conservation Ambassador Work; Michael Hoggarth, Professor Emeritus, Wins …

Perceived Barriers To Integrated Crop–Livestock Systems: Evidence From A Nebraska Producer Survey, Omid Tarashtwal

Department of Agricultural Economics: Dissertations, Theses, and Student Research

Integrated crop-livestock systems offer agronomic, economic, and environmental benefits, yet reintegration has been slow across the Northern Great Plains despite sustained interest. Existing research has documented barriers to transition conceptually, but quantitative evidence on which barriers producers perceive as most important and which producer and operation characteristics are associated with stronger barrier perceptions remains limited. This thesis addresses that gap using data from the 2023 Nebraska Agriculture Operator Survey.

The analysis focuses on 241 Nebraska producers, including 179 crop-only and 62 livestock-only operations. Seven models are estimated, combining ordered logit estimation for single-item barriers with linear regression for averaged barrier …

Growing South Dakota (Spring 2026), College Of Agriculture, Food, And Environmental Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 National heritage, statewide research, local impact
[Page] 7 About the South Dakota Agricultural Experiment Stations
[Page] 14 Managing the mooo-ment: How SDSU researchers are looking to improve cow health during the Transition Period
[Page] 18 Discovering strength in science: How education through undergraduate research prepares students for the future
[Page] 20 From India to Brookings: One grad student’s path to make a world of difference in virology
[Page] 22 Solving a billion-dollar problem: Identifying disease-resistent wheat genes
[Page] 24 Unlocking manure’s potential: SDSU leads multistate study on the power of swine manure in growing better crops
[Page] 28 …

Assessment Of Precision Rangeland Management Tools In The Nebraska Sandhills, Hannah K. Allen

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

The objective of this thesis is to evaluate tools and management strategies that contribute to rangeland monitoring and livestock distribution in heterogeneous grassland systems of the Nebraska Sandhills. Chapter one reviews relevant literature related to precision livestock management, the Nebraska Sandhills, biomass estimation, and pyric herbivory. The second chapter evaluates the use of fractional green canopy cover (FGCC) derived from the Canopeo mobile application as a rapid method for estimating aboveground biomass in Sandhills rangelands. Biomass samples were collected across topographic positions in both early and late growing season, and relationships between FGCC and clipped biomass were assessed using generalized …