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Hyperseed: An End-To-End Method To Process Hyperspectral Images Of Seeds, Tian Gao, Anil Kumar Nalini Chandran, Puneet Paul, Harkamal Walia, Hongfeng Yu

School of Computing: Faculty Publications

High-throughput, nondestructive, and precise measurement of seeds is critical for the evaluation of seed quality and the improvement of agricultural productions. To this end, we have developed a novel end-to-end platform named HyperSeed to provide hyperspectral information for seeds. As a test case, the hyperspectral images of rice seeds are obtained from a high-performance line-scan image spectrograph covering the spectral range from 600 to 1700 nm. The acquired images are processed via a graphical user interface (GUI)-based open-source software for background removal and seed segmentation. The output is generated in the form of a hyperspectral cube and curve for each …

Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Thomas O. Powers

Department of Plant Pathology: Faculty Publications

DNA barcoding with the mitochondrial COI gene reveals distinct haplotype subgroups within the monophyletic and parthenogenetic nematode species, Mesocriconema xenoplax. Biological attributes of these haplotype groups (HG) have not been explored. An analysis of M. xenoplax from 40 North American sites representing both native plant communities and agroecosystems was conducted to identify possible subgroup associations with ecological, physiological, or geographic factors. A dataset of 132 M. xenoplax specimens was used to generate sequences of a 712 bp region of the cytochrome oxidase subunit I gene. Maximum-likelihood and Bayesian phylogenies recognized seven COI HG (≥99/0.99 posterior probability/bootstrap value). Species delimitation …

Ecological And Morphological Differentiation Among Coi Haplotype Groups In The Plant Parasitic Nematode Species Mesocriconema Xenoplax, Julianne N. Matczyszyn, Timothy Harris, Kirsten S. Powers, Sydney E. Everhart, Tom Powers

Department of Plant Pathology: Faculty Publications

DNA barcoding with the mitochondrial COI gene reveals distinct haplotype subgroups within the monophyletic and parthenogenetic nematode species, Mesocriconema xenoplax. Biological attributes of these haplotype groups (HG) have not been explored. An analysis of M. xenoplax from 40 North American sites representing both native plant communities and agroecosystems was conducted to identify possible subgroup associations with ecological, physiological, or geographic factors. A dataset of 132 M. xenoplax specimens was used to generate sequences of a 712 bp region of the cytochrome oxidase subunit I gene. Maximum-likelihood and Bayesian phylogenies recognized seven COI HG (≥99/0.99 posterior probability/bootstrap value). Species …

Intake Estimation Of Rams Under Grazing Condition In A Deferred Pastures Of Panicum Coloratum By Two Techniques, C. M. Ferri, M. A. Brizuela, N. P. Stritzler, H. J. Petruzzi

IGC Proceedings (1977-2023)

The goal of this study was to quantify the organic matter intake (OMI) of Pampinta rams grazing in a Panicum coloratum cv Verde differed pasture. The OMI was compared by two methods: a) the difference between the forage measured in pre and post-grazing condition, and b) the faecal production:digestibility ratio of the diet, estimated by total faecal gathering, and from the quantity of total faecal N in g per 100 g^-1 of OMI and the concentration of total faecal N, respectively. The OMI estimated by difference between the forage measured in pre and post-grazing was 9 % higher (P …

Estimation Of Organic Matter Digestibility And Intake From Faecal Organic Matter And Daily N Excretion And Concentration, C. M. Ferri, N. P. Stritzler, M. A. Brizuela

IGC Proceedings (1977-2023)

This study was performed with grazing sheep, to establish: a) if the amount of total faecal N (C; in g 100g^-1 of organic matter intake (OMI)) remains constant at three feeding levels, in four utilisation periods of deferred Panicum coloratum cv. Verde; b) the relationship between C and faecal N fractions, and c) the relationship between faecal daily excretion of OM and N, and OMI. Intake increased (P< 0.01) with utilisation period, and was related (r = - 0.82; P< 0.01) to the protein content of food, the insoluble N fraction (r = -0.49; P< 0.01) and the soluble:insoluble N ratio (r = 0.41; P< 0.01) in faeces. No relation with total N concentration (r = -0.22; P> 0.05) or soluble N fraction (r = -0.02; P> 0.05) in faeces could be found. Daily excretion of OM and N were positively related (R² = 0.93 and 0.96, respectively; …

Effects Of Fertilization And Legume Introduction On The Forage Production Of Brachiaria Decumbens Pastures, M. R. Correa, Tsutomu Kanno, Manuel C. M. Macedo, J. D. G. Santos Junior, L. G. Beretta

IGC Proceedings (1977-2023)

A grazing experiment was conducted to examine the effects of P and K fertilization and legume introduction on the forage production of Brachiaria decumbens (BD) pastures. Amount of biomass, dry matter production and forage quality were evaluated on BD pastures where three treatments were applied: without maintenance fertilizer (BD-N), with maintenance fertilizer (BD-F), and BD and Stylosanthes guianensis cv. Mineirao (SG) mixture with maintenance fertilizer (BD-FL). The fertilizer application increased an annual average of biomass and the contents of P and K in the leaves. On the other hand, the legume introduction had a positive influence on crude protein and …

Effect Of Five Different Rest Periods On Tiller Regrowth Of Ryegrass, R. W. Coelho, W. R. Ocumpaugh

IGC Proceedings (1977-2023)

Five rest periods were imposed from April to May on a mixed pasture of two ryegrass (Lolium multiflorum Lam.) varieties and white clover (Trifolium repens L.). The rest period starting dates were: April 4, April 18, May 2, May 16, and May 30, for rest periods 1, 2, 3, 4, and 5, respectively. The total area allocated to the experiment was 1.1 ha, which was divided into 22 pastures. The experimental design used was a split-plot. Rest period was assigned to the main plot, grass to the subplot and legume to the subsubplot. The pastures were “mob-grazed” by …

Aboveground Standing Crop Of An Ungrazed Elyonurus Muticus Grassland Under Annual Burning In The Pantanal, Brazil, E. L. Cardoso, S. M. A. Crispim, C. A. G. Rodrigues

IGC Proceedings (1977-2023)

This study was conducted in the Pantanal of Mato Grosso do Sul state, Brazil, from September 1995 to July 1997. The objective was to evaluate the effect of annual burning on grasses and forbs biomass and standing dead in an ungrazed grassland of Elyonurus muticus. In two areas, one free of burning (control) and another area with annual burning, grasses, forbs aboveground biomass, and standing dead were collected. The experimental design was completely randomized with 10 replications. Burning modified the grasses and forbs biomass dynamics when compared to the area free of burning. After the first burning the grasses …

Contract Grazing Of Young Beef Cattle On Ryegrass In The Southeastern Usa, David I. Bransby

IGC Proceedings (1977-2023)

The objective of this study was to evaluate contract grazing (in which the landowner grazes cattle owned by someone else for a specified fee) as an alternative to traditional ownership of the cattle, in order to improve profitability of grazing young beef cattle on annual ryegrass under limited availability of operating capital in the southeastern USA. Production data from a two-year grazing experiment were used as a basis for an economic analysis which assumed market prices for the beef industry in the region. Return/ha over animal and pasture costs was $312.20 for contract grazing, and $477.50 for purchased cattle. However, …

Horses Grazing Management To Promote Distribution Of Lotus Tenuis (Waldst. Et Kit) In A Temperate Grassland, O. E. Ansín

IGC Proceedings (1977-2023)

In a temperate grassland of the Argentine Pampa, the birdsfoot trefoil (Lotus tenuis Waldst. et Kit) distribution was analyzed as a consequence of the grazing method used. In a plot of 40 ha occupied by native grassland an area of 16 ha was implanted with reed canary grass (Phalaris aquatica L.) and L. tenuis. This area was divided into two parts that contained the same pasture and native grassland surfaces, being grazed by horses. One, under continuous grazing and another one, under a controlled grazing. In the continuous grazing the whole year the animals had permanently access …

Biol 1411- Botany Laboratory Manual, Yolander R. Youngblood

Open Education Resources

Botany Laboratory Manual By – Yolander R.Youngblood, PhD.

This manual was reviewed by student editors, Ayanna Montegut and Ineceia Carter.

Table of Contents

1. The Plant Cell Lab

2. Mitosis Lab

3. Plant Growth and Development Lab

4. Simple Tissue Lab

5. Leaf Lab

6. Stem Lab

7. Root Lab

8. Evolution of Land Plants Lab

9. Bryophyte Lab

10. Fern Lab

11. Gymnosperm Lab

12. Angiosperm Lab

13. Appendix

a. Writing in the Scientific Notebook

b. How to use the Microscope

c. Plants and Their Structure

d. Additional Video, Lecture, and Lab Resources

Climate And Agronomy, Not Genetics, Underpin Recent Maize Yield Gains In Favorable Environments, Gonzalo Rizzo, Juan Pablo Monzon, Fatima Amor Tenorio, Réka Howard, Kenneth G. Cassman, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Quantitative understanding of factors driving yield increases of major food crops is essential for effective prioritization of research and development. Yet previous estimates had limitations in distinguishing among contributing factors such as changing climate and new agronomic and genetic technologies. Here, we distinguished the separate contribution of these factors to yield advance using an extensive database collected from the largest irrigated maize-production domain in the world located in Nebraska (United States) during the 2005-to-2018 period. We found that 48% of the yield gain was associated with a decadal climate trend, 39% with agronomic improvements, and, by difference, only 13% with …

Irrigation Systems Management, Dean E. Eisenhauer, Derrel L. Martin, Derek M. Heeren, Glenn J. Hoffman

Open Educational Resources: Textbooks

Like most textbooks, this book grew out of our desire to have written material that matches the educational needs of both the students and the instructor of a college course, in this case a course entitled Irrigation Systems Management. The book is the culmination of course notes which have been in development and use for nearly 30 years.

The emphasis of this book is on the management of irrigation systems that are used for agricultural crop production. There are two distinct components of the book, starting with the soil-water-plant-atmosphere system and how soil water should be managed to achieve the …

Productivity Of Intensive Grazing Systems Based Upon Irrigated Pangola Pastures In The French West Indies, G. Alexandre, M. Mahieu, G. Aumont, M. Naves

IGC Proceedings (1977-2023)

This work deals with the comparison of the productivity of intensive grazing systems (IGS) in the French West Indies, used for meat production with cattle, goat and sheep. IGS are based upon the use of irrigated, fertilized, and high stocked (1.8 to 1.4 t live weight/ha/year) and rotational grazing Digitaria decumbens pastures. They lie upon good performance levels of local breeds, Creole cattle and Creole goats of Guadeloupe and Martinik ewes, and upon improved general husbandry. Both sheep and goat in IGS exhibit high levels of productivity. They reached up to 1000 kg LW of weaned offsprings and 1400 kg …

Potential Of Crop Rotation Using Forages In The Tropics, P. L. Mafongoya

IGC Proceedings (1977-2023)

Soil fertility is a fundamental biophysical root cause of food insecurity sub-Saharan Africa. Low quality crop residues and grasses during the dry season also limit animal productivity. Forage legumes (herbaceous and tree legumes) have great potential to increase crop animal productivity. Technologies have been developed over the past 3 decades to fully integrate forage legumes into farming. Most of these technologies are still on shelves with low adoption by farmers. Rhe role of forage legumes in nutrient cycling is reviewed in this paper. The factor limiting adoption will also be discussed. Innovative dissemination pathways to increase adoption will be suggested.

The Role Of Forages In Sustainable Cropping Systems Of Southern Australia, William D. Bellotti

IGC Proceedings (1977-2023)

The historical context, recent trends, and possible future role of forages in cropping systems are reviewed. Three recent themes will be developed: 1) The successful exploitation of genetic diversity resulting in commercial development of new legume species as pasture cultivars with specific traits better suited to the needs of current farming systems. 2) Improved understanding of key soil processes under grazed pastures, particularly soil water and soil nitrogen, and how these processes impact on indicators of sustainability like deep drainage and nitrate leaching. 3) An emerging capacity for predicting the effect of pasture-crop sequences on soil processes, crop growth and …

Performance Of Millet Cultivars In Succession To Field Crop Of Beans In Southern Portion Of State Of Minas Gerais - Brazil, José C. Pinto, M. C. Maia, A. R. Evangelista, I. F. De Andrade, Joel Augusto Muniz, I. P. A. Dos Santos, E. R. P. Bomfim

IGC Proceedings (1977-2023)

This trial was carried out at the Department of Animal Science - Universidade Federal de Lavras (UFLA), from February to June, 1997. It was evaluated the performance of three millet [Pennisetum glaucum (L.) R. Br.] cultivars, as a second crop (Common, BN 2 and CMS 02) and four sowing dates (02/22, 03/14, 04/03 and 04/23). The three millet cultivars were sown after a cropping of beans (Phaseolus vulgaris L.) by the end of the rainy season, with no additional fertilization. It was used the randomized block design in a split-plot scheme, allocating the sowing dates on the main …

Forage Yield And Nutritive Value Of Spring Oats For Various Cultivars And Planting Dates At The Middle Mountain Area, S. Seo, W. H. Kim, D. E. Shin, G. J. Choi, G. J. Park

IGC Proceedings (1977-2023)

The experiment was carried out to determine the optimum cultivars and effects of planting date on growth, forage yield and nutritive value of spring sown oats (Avena sativa L.) at the middle mountainous area, Namwon, NLRI, Korea, 1998. The cultivars used in this study was Cayuse, Swan, Foothill, Cashel, Martlock and Winjardie, and the planting dates were 9, 14, 19, 24 and 29 March, and all the forages were harvested on 9 June. Swan among spring oats was the earliest heading type (21 May), and then Martlock (25 May), Winjardie (27 May), and Foothill was the latest (14 June). …

Performance Of Steers In Brachiaria Decumbens Pastures, Permanent And In Rotation With Soybean, L. A. Z. Machado, A. C. Fabrício, J. C. Salton

IGC Proceedings (1977-2023)

The integration agriculture/pasture is an alternative that allows countless benefits to the rural producer. At Embrapa Agricultural West four production systems were studied and two of them involved animal production. The systems Soybean/Pasture Rotation and Permanent Pasture were compared from september/98 to may/99. The availability and residue of dry matter of green leaves blades (DMGLB), stems (SDM) and senescent material, the gain/animal and gain/area was evaluated. The availability was monthly assessed. Herbage residue was higher in the Soybean/Pasture Rotation system. This system allowed gain/animal and gain/ha of 0.814 kg/day and 582 kg/ha, respectively, whereas the Permanent Pasture system the gain …

Alternative Cropping Systems With Self Reseeding Annual Legumes In A Mediterranean Environment, E. Campiglia, F. Caporali, R. Mancinelli

IGC Proceedings (1977-2023)

Self-reseeding winter annual legumes (subclover and snail medic) have the potential to induce a significant shift towards a less energy-intensive and more environmentally friendly management in the modern and specialized cereal cropping systems. Nevertheless their use is practically unknown in mixed stands with winter cereals, where they can contribute to supply nitrogen and to reduce herbicides input. We conceived an alternative cropping system where an annual legume performs, respectively, as living mulch in a winter cereal (winter wheat), as a cover crop after reseeding and as dry mulch for the succeeding summer cereal (corn). Trials carried out at the Tuscia …

Integration Of Cattle And Improved Pastures Under Coconuts In Southern Luzon, Philippines, F. A. Moog, H. E. Diesta, A. G. Deocareza

IGC Proceedings (1977-2023)

Results of two studies involving 1) grazing of Signalgrass (Brachiaria decumbens) pastures at different stocking and 2) cut-and-carry forages in smallholder farms for cattle under coconuts are presented. Grazing at 3 AU/ha and 2 AU/ha gave significantly higher LWG/ha (P 0.05) over 1 AU/ha but highest financial return was obtained from 2 AU/ha. Productivity of cattle on cut-and-carry forages in small farms varies among farmers with better animal performance directly related to quantity and quality of feeds offered and industriousness of individual farmers. Both studies showed the benefits derived from integration of cattle with improved pastures under coconuts.

Legumes For Organic Cropping Systems, F. Caporali, R. Mancinelli, E. Campiglia

IGC Proceedings (1977-2023)

A field experiment which focuses on the yield performance of both durum wheat and sunflower included in a twoyear rotation between wheat/subterranean clover and sunflower was carried out in an organic farm in Central Italy. Three factors were included in the experiment according to a factorial design: a) two different previous crop sequences (four years of alfalfa, four years of annual crops); b) three fertilization levels (without and with animal manure incorporated at 15 or 40 cm depth); c) three durum wheat genotypes (Appulo, Arcangelo and Daunia cvs). The results obtained show that a previous alfalfa meadow allows the succeeding …

Effects Of Preservation With Pre-Fermented Green Juice (Fgj) On Fermentation Quality And Energy And Nitrogen Utilization Of Round-Baled Alfalfa Silage By Dairy Cattle, Li-Man Cao, Yoshitaka Deguchi, M. Mizutani, M. Goto, Y. Yamamoto, S. Urakawa, Y. Yamada, M. Matsui, T. Masuko, Yasuhiro Kawamoto

IGC Proceedings (1977-2023)

This study was conducted to examine the effects of pre-fermented green juice (FGJ) of epiphytic lactic acid bacteria (LAB) on the fermentation quality and animal performance of round-baled alfalfa silage (Medicago stativa L.,cv. Dupuits). Ensiling treatments of wilting and FGJ additives (WFGJ) and direct-cut and FGJ additives (DFGJ) improved the fermentation quality of alfalfa silage more than that of wilting (W). Enhanced fermentation in the WFGJ and DFGJ silage was also associated with the increases of energy and nitrogen utilization of the silage by dry Holstein dairy cattle, as fed on diets formulated with alfalfa silage, oat …

Effect Of Application Of Farmyard Manure To Ley On Forage Yield And Quality Of Grass Silage, T. M. Pauly, L. Rodhe

IGC Proceedings (1977-2023)

A two-year field trial was performed on ley near Uppsala, Sweden, with the following treatments (3 plots/treatment): A, no manure or fertiliser; B, manure applied in Oct.; C, manure applied in Oct. followed by rolling plots in May; D, manure applied in May; E, mineral fertiliser only. Apart from cattle manure, plots allocated to treatments B, C and D received the same amount of mineral nutrients as treatment E. The objective of this experiment was to get an indication of how different times of manure application (before or after the growth period) affected forage yields and the quality of the …

The Effects Of Cellulase On Cell Wall Structure And The Rumen Digestion Of Alfalfa Silage, T. Ishida, A. Aisan, K. Tomiyama, T. Watanabe, H. Terui, E. No, K. Ataku

IGC Proceedings (1977-2023)

First- and second-cut alfalfa (Medicago sativa) was ensiled with no additive, microbial (Lactobacillus casei) inoculant, cellulase derived from Acremonium celluloytics Y-94, co-addition of inoculant and cellulase, and formic acid. The resultant silages were digested in the rumen of a dairy cow. The alfalfa and the silages were then examined with scanning electron microscope (SEM) and their chemical characteristics analyzed to evaluate the effects of cellulase on the quality of alfalfa silage and its cell wall structure.

The addition of cellulase lend to both a greater loss of parenchymal tissue and decrease in digestibility during rumen degradation …

The Effect Of Cellulase On Cell Wall Structure And The Rumen Digestion Of Timothy Silage, A. Aniwaru, T. Ishida, T. Watanabe, K. Tomiyama, H. Terui, K. Ataku, L. E. Chase

IGC Proceedings (1977-2023)

The objective of this study was to determine the effect of additives on the structure changes of related tissues during the ensiling process and the rumen digestion of timothy. In the first cut-timothy, the addition of LC+AC improved the fermentation qualities of the silage. Addition of cellulase resulted in significant decreases in NDF, ADF, cellulose, and hemicellulose content. SEM examination of the samples suggests that the degradation of parenchymal tissues was enhanced by the cellulase, but no significant differences were observed among the additives in the rumen digestion. The NDF and cellulose digestibility of the AC- and LC+AC-treated silages were …

Quality Of Ammoniated Brachiaria Decumbens Hay, L. O. Fernandes, Ricardo A. Reis, L. R. A. Rodrigues

IGC Proceedings (1977-2023)

The experiment was conducted at UNESP-Jaboticabal to evaluate the quality of Brachiaria decumbens hays harvested after seed ripening. The hays were submitted to the following treatments: control, anhydrous ammonia (3.0% NH₃ in the DM), and urea (5.0% in the DM). The chemical composition, digestibility and the performance of steers were evaluated using a complete randomized block design with three treatments and six replications. The ammoniation either with NH3 or urea increased (P< 0.05) the CP content, and the IVDMD. The NH₃ treatment reduced (P < 0.05) the contents of NDF and ADF, and the urea application reduced (P < 0.05) the contents of hemicellulose and lignin. The ammoniation did not affect (P > 0.05) the neutral detergent insoluble nitrogen, and acid detergent insoluble nitrogen values. Steers receiving Brachiaria hay plus soybean meal (1.08 kg DM.day), hay …

Ensiling Of Different Legumes Compared To Grass, S. Slottner, C. Rammer

IGC Proceedings (1977-2023)

The objective of this study was to examine the ensiling characteristics of four different forage legumes: galega (Galega orientalis), lucerne (Medicago sativa), white clover (Trifolium repens) and red clover (Trifolium pratense), and compare these with perennial ryegrass (Lolium perenne), using different additives. The crops were mowed using a sickle bar mower and chopped using a precision chop harvester. The crops were ensiled either direct cut or wilted to 35-45% DM. Wilting took place on a barn drier. Forages were ensiled either untreated or with addition of formic acid, Promyr or …

Lactic Acid Bacteria Isolated From Forage Crops And Silage Fermentation, Yimin Cai, Ryuichi Uegaki, Y. Fujita

IGC Proceedings (1977-2023)

Six strains, Lactobacillus plantarum CM 1, Lactobacillus rhamnosus CM 2, Pediococcus acidilactici CM 4 Enterococcus faecalis CM 5, Leuconostoc pseudomesenteroides CM 7 and Weissella paramesenteroides CM 8 isolated from forage crops were used as additives at 1.0x10⁵ cfu g^-1 of fresh matter to Italian ryegrass and alfalfa, and their effect on silage fermentation was studied. The two silage’s treated with strains CM 1, CM 2 and CM 4 were well preserved; had significantly lower pH values, butyric acid and ammonia N concentrations; and had significantly higher lactic acid content than did the respective control, strains CM 5, CM …

Wild Bee Visitors And Floral Source Associations In The Conservation Reserve Program Habitat In Ne Iowa, Ai Wen, Kenneth J. Elgersma, Mark E. Sherrard, Laura L. Jackson, Justin Meissen, Mark C. Myers

Data Sets

The spreadsheet documents data collected in the study described in the manuscript “Wild bee visitors and their association with sown and unsown floral resources in reconstructed pollinator habitats within an agriculture landscape”. Data included in the spreadsheet shows the name of each collected wild bee specimen and the flower species where the bee was collected. Data were used to construct the bee-pollinator network and calculate the network metrics for each study site.