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Drought Induced Morphological And Compositional Changes In Creeping Bentgrass (Agrostis Stolonifera Var. L. Palustris) Cuticle As It Influences Foliar Nitrogen Absorption, Frank Bethea Jr Aug 2012

Drought Induced Morphological And Compositional Changes In Creeping Bentgrass (Agrostis Stolonifera Var. L. Palustris) Cuticle As It Influences Foliar Nitrogen Absorption, Frank Bethea Jr

All Theses

Creeping bentgrass is the most popular turfgrass species on golf course putting greens throughout the world due to its fine texture, recuperative ability and dense growth habit. Drought stress is an environmental induced condition that is common to turfgrasses. Foliar fertilization is a common maintenance practice that is conducted and utilized on golf course putting greens due to the reduced total input, quick response and reduced environmental impact. The cuticle of creeping bentgrass creates a hydrophobic barrier that foliar applied fertilizers need to penetrate to be used by the plant. The cuticle morphology and composition is subject to change due …


Aloe Striata Plant Defense Compounds Produced In Response To Jasmonic Acid, Salicylic Acid, And Eriophyid Mite Salivary Extract Elicitor Compounds, Fritz Light Aug 2012

Aloe Striata Plant Defense Compounds Produced In Response To Jasmonic Acid, Salicylic Acid, And Eriophyid Mite Salivary Extract Elicitor Compounds, Fritz Light

Master's Theses

Aloe mites are herbivores of the genus Aloe (ALOACEAE) and are associated with hyperplastic growth in various aloe species, but the biochemistry of this interaction is poorly understood. In an effort to characterize plant defense responses to herbivory in the genus Aloe, a salivary extract was isolated from aloe mites (Aceria aloinis Keifer) and its bioactivity was tested using a hypocotyl elongation assay. Subsequently, Aloe striata plants were treated with jasmonic acid (JA), salicylic acid (SA), and the mite salivary extract. Using water and methanol, compounds of different polarity were extracted from aloe tissues that had been frozen …


The Potential Environmental Benefits Of Hybrid Rice Varieties, Haxhire Myrteza Aug 2012

The Potential Environmental Benefits Of Hybrid Rice Varieties, Haxhire Myrteza

Graduate Theses and Dissertations

With water insufficiency being already a major issue and potential carbon policies on greenhouse gas (GHG) emissions, Arkansas rice producers may need to undergo some changes in regards to rice cultivar selection. The purpose of this study is to estimate the environmental benefits of cultivating hybrid rice varieties as opposed to conventional and Clearfield rice varieties. To accomplish this goal, water use and GHG emissions were estimated on per acre (ac) and per bushel (bu) basis for most commonly cultivated rice varieties in Arkansas. The study focuses particularly on six main rice stations in the State of Arkansas. The hypothesis …


Evaluation Of Isothiocyanates And Herbicide Programs As Methyl Bromide Alternatives For Weed Control In Polyethylene-Mulched Tomato And Bell Pepper, Pratap Devkota Aug 2012

Evaluation Of Isothiocyanates And Herbicide Programs As Methyl Bromide Alternatives For Weed Control In Polyethylene-Mulched Tomato And Bell Pepper, Pratap Devkota

Graduate Theses and Dissertations

Methyl bromide (MeBr), a Class I ozone –depleting substance, has been banned for ordinary agricultural uses. In the absence of an effective MeBr alternative, weed control is a major challenge for commercial tomato and bell pepper production. Field trials were conducted at Fayetteville, AR, to compare allyl isothiocyanate (ITC), metam sodium, and herbicide programs with the standard MeBr application (mixture of MeBr plus chloropicrin at 67% plus 33%, respectively, hereafter referred to as MeBr) for crop injury, weed control, viable yellow nutsedge tubers, and marketable yield in low–density polyethylene (LDPE) mulched tomato and bell pepper production. In addition, herbicide programs …


The Impact Of Selected Forage Legumes On Cattle Performance, Forage Production, And Soil Quality, And Evaluation Of Legume Persistence Under Grazing, Bradley Edward Briggs Aug 2012

The Impact Of Selected Forage Legumes On Cattle Performance, Forage Production, And Soil Quality, And Evaluation Of Legume Persistence Under Grazing, Bradley Edward Briggs

Graduate Theses and Dissertations

Interest in substituting legumes for N fertilizer in beef cattle grazing systems has recently increased with rising fertilizer prices. Legumes are well known for their ability to fix atmospheric N and decrease dependence on input of N fertilizer. However, there are still difficulties associated with legume utilization including establishment and persistence. Two experiments were conducted to evaluate legume performance under herbivory. The objective of Experiment 1 was to compare forage production and beef cattle gains from annual ryegrass [Lolium multiflorum (L.)] and bermudagrass [Cynodon dactylon (L.) Pers.] pastures fertilized with N or overseeded with legumes. Gelbvieh × Angus …


Flight Period And Species Composition Of Sirex (Hymenoptera: Siricidae) And Associated Deladenus (Nematoda: Neotylenchidae) Within Arkansas Pine Forests, Danielle Keeler Aug 2012

Flight Period And Species Composition Of Sirex (Hymenoptera: Siricidae) And Associated Deladenus (Nematoda: Neotylenchidae) Within Arkansas Pine Forests, Danielle Keeler

Graduate Theses and Dissertations

The European woodwasp, Sirex noctilio F. (Hymenoptera: Siricidae), which is a known destructive pest of pine in the southern hemisphere was recently discovered in the eastern United States. Before we can understand how S. noctilio may affect pine forests throughout the United States, we need a better understanding of native Sirex and the role they play in the ecosystem. The objectives of this research were to 1) determine species composition and flight period for native Sirex; 2) confirm presence of parasitic nematodes, Deladenus (Nematoda: Neotylenchidae), within adult Sirex; 3) investigate Deladenus parasitism rates; 4) verify the number of Deladenus species …


Genetic Characterization Of Fine-Leaved Festuca Valesiaca Germplasm And Evaluation Of Their Relationship To The Festuca Ovina Complex, Yingmei Ma Aug 2012

Genetic Characterization Of Fine-Leaved Festuca Valesiaca Germplasm And Evaluation Of Their Relationship To The Festuca Ovina Complex, Yingmei Ma

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fine-leaved Festuca valesiaca has stress tolerance. However, its agronomic performance in the western United States and its genetic relationship to species of the Festuca ovina complex has not been investigated. Also, natural hybridization makes them difficult to identify. Given the species' potentials, our project was designed to identify Festuca valesiaca accessions that possess high biomass and seed yield and to examine their relatedness with the Festuca ovina complex.

The Festuca valesiaca accessions examined produced many small seeds. Seed production was correlated with the total biomass, plant height, and plant vigor. The Festuca valesiaca accessions examined were shorter than the control …


Geographical Distribution And Survival Of Iris Yellow Spot Virus In Spiny Sowthistle, Sonchus Asper, In Georgia, Claudia Nischwitz Aug 2012

Geographical Distribution And Survival Of Iris Yellow Spot Virus In Spiny Sowthistle, Sonchus Asper, In Georgia, Claudia Nischwitz

All Current Publications

No abstract provided.


Regulation Of Mirna Abundance By Rna Binding Protein Tough In Arabidopsis, Guodong Ren, Meng Xie, Yongchao Dou, Shuxin Zhang, Chi Zhang, Bin Yu Jul 2012

Regulation Of Mirna Abundance By Rna Binding Protein Tough In Arabidopsis, Guodong Ren, Meng Xie, Yongchao Dou, Shuxin Zhang, Chi Zhang, Bin Yu

Center for Plant Science Innovation: Faculty Publications

MicroRNAs (miRNAs) are regulators of gene expression in plants and animals. The biogenesis of miRNAs is precisely controlled to secure normal development of organisms. Here we report that TOUGH (TGH) is a component of the DCL1–HYL1–SERRATE complex that processes primary transcripts of miRNAs [i.e., primary miRNAs (pri-miRNAs)] into miRNAs in Arabidopsis. Lack of TGH impairs multiple DCL activities in vitro and reduces the accumulation of miRNAs and siRNAs in vivo. TGH is an RNA-binding protein, binds pri-miRNAs and precursor miRNAs in vivo, and contributes to pri-miRNA–HYL1 interaction. These results indicate that TGH might regulate abundance of miRNAs through promoting DCL1 …


A Technique For Identification Of Intrinsic Resistance Of Maize Varieties To Sitophilus Zeamais (Motsch.) (Coleoptera: Curculionidae) Infestations, Cp Rugumamu Jul 2012

A Technique For Identification Of Intrinsic Resistance Of Maize Varieties To Sitophilus Zeamais (Motsch.) (Coleoptera: Curculionidae) Infestations, Cp Rugumamu

Tanzania Journal of Science

A new technique used to identify resistant maize varieties to the maize weevil, Sitophilus zeamais (Motsch.) infestations is presented. It applies Sodium Dodecyl Sulphate- Polyacrylamide Gel Electrophoresis (SDS - PAGE) of the insect fat body to determine the levels of fat body vitellogenin (FVg) in the vitellogenic S. zeamais females which were reared on different maize varieties. Results on levels of FVg varied and ranged from 83.33% to 43.33% in insects raised in different varieties ANOVA of FVg, maize weight loss and F1 numbers showed significant differences among the varieties at P<0.05. Maize weight loss and F1 numbers were positively correlated with FVg, r = 0.74 and 0.98, P< 0.05. The revealed amounts of FVg in S. zeamais obtained from the varieties indicated varying intrinsic resistance of the varieties to the insect pest. The varieties exhibited resistance in descending order: ZM 621>H 622> H 511> Situka 1> Situka M1 …


Discovery Of Novel Dsrna Viral Sequences By In Silico Cloning And Implications For Viral Diversity, Host Range And Evolution, Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Xianhong Yi, Daohong Jiang Jul 2012

Discovery Of Novel Dsrna Viral Sequences By In Silico Cloning And Implications For Viral Diversity, Host Range And Evolution, Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Xianhong Yi, Daohong Jiang

Plant Pathology Faculty Publications

Genome sequence of viruses can contribute greatly to the study of viral evolution, diversity and the interaction between viruses and hosts. Traditional molecular cloning methods for obtaining RNA viral genomes are time-consuming and often difficult because many viruses occur in extremely low titers. DsRNA viruses in the families, Partitiviridae, Totiviridae, Endornaviridae, Chrysoviridae, and other related unclassified dsRNA viruses are generally associated with symptomless or persistent infections of their hosts. These characteristics indicate that samples or materials derived from eukaryotic organisms used to construct cDNA libraries and EST sequencing might carry these viruses, which were not easily detected by the researchers. …


Reproductive Characteristics Of A Populus Euphratica Population And Prospects For Its Restoration In China, Dechang Cao, Jingwen Li, Zhenying Huang, Carol C. Baskin, Jerry M. Baskin, Peng Hao, Weilei Zhou, Junqing Li Jul 2012

Reproductive Characteristics Of A Populus Euphratica Population And Prospects For Its Restoration In China, Dechang Cao, Jingwen Li, Zhenying Huang, Carol C. Baskin, Jerry M. Baskin, Peng Hao, Weilei Zhou, Junqing Li

Biology Faculty Publications

Populus euphratica is a dominant tree in riparian ecosystems in arid areas of northwest China, but it fails to regenerate in these systems. This study evaluates causes for the failure of sexual and asexual regeneration of this species in the wild. P. euphratica disperses as many as 85743 seeds/m2 during summer, and the seeds germinate to 92.0% in distilled water and to 60.8% on silt. However, very few seeds (3.6%) can germinate on unflooded soil. The seed-rain season is prolonged by temporal variability in seed dispersal among individuals, which ensures that seedling emergence can occur during favorable conditions (i.e., …


Tcp Transcription Factor, Branch Angle Defective 1 (Bad1), Is Required For Normal Tassel Branch Angle Formation In Maize, Fang Bai, Renata Reinheimer, Diego Durantini, Elizabeth Kellogg, Robert Schmidt Jul 2012

Tcp Transcription Factor, Branch Angle Defective 1 (Bad1), Is Required For Normal Tassel Branch Angle Formation In Maize, Fang Bai, Renata Reinheimer, Diego Durantini, Elizabeth Kellogg, Robert Schmidt

Biology Department Faculty Works

In grass inflorescences, a structure called the “pulvinus” is found between the inflorescence main stem and lateral branches. The size of the pulvinus affects the angle of the lateral branches that emerge from the main axis and therefore has a large impact on inflorescence architecture. Through EMS mutagenesis we have identified three complementation groups of recessive mutants in maize having defects in pulvinus formation. All mutants showed extremely acute tassel branch angles accompanied by a significant reduction in the size of the pulvinus compared with normal plants. Two of the complementation groups correspond to mutations in the previously identified genes, …


Utility Of Phylloplanins As Antibiotics, Selective Fungicides And For Enhancing Microbial Resistance In Plants, George Wagner, Ryan Sheperd Jul 2012

Utility Of Phylloplanins As Antibiotics, Selective Fungicides And For Enhancing Microbial Resistance In Plants, George Wagner, Ryan Sheperd

Plant and Soil Sciences Faculty Patents

The present invention relates to plant proteins produced by a plant's epidermal layer that contribute to the innate pest/disease resistance of the plant (“phylloplanins”), compositions comprising the phylloplanins and methods of using them. In particular the methods relate to inhibiting or preventing microbial, e.g., fungal or bacterial, growth on a subject, organism or surface by administering a phylloplanin. The invention also relates to transformed host cells that produce phylloplanins, and to transgenic plants producing phylloplanins conferring increased resistance to microbial infections/growth.


Genetic Structure And Mating System Of Wild Cowpea Populations In West Africa, Eric B. Kouam, Remy S. Pasquet, Pascal Campagne, Jean Baptiste Tignegre, Kevin Thoen, Remi Gaudin, Jeremy T. Ouedraogo, Abdulai B. Salifu, Geoffrey M. Muluvi, Paul Gepts Jul 2012

Genetic Structure And Mating System Of Wild Cowpea Populations In West Africa, Eric B. Kouam, Remy S. Pasquet, Pascal Campagne, Jean Baptiste Tignegre, Kevin Thoen, Remi Gaudin, Jeremy T. Ouedraogo, Abdulai B. Salifu, Geoffrey M. Muluvi, Paul Gepts

All Peer-Reviewed Publications

Background: Cowpea is a highly inbred crop. It is part of a crop-weed complex, whose origin and dynamics is unknown, which is distributed across the African continent. This study examined outcrossing rates and genetic structures in 35 wild cowpea (Vigna unguiculata ssp. unguiculata var. spontanea) populations from West Africa, using 21 isozyme loci, 9 of them showing polymorphism.Results: Outcrossing rates ranged from 1% to 9.5% (mean 3.4%), which classifies the wild cowpea breeding system as primarily selfing, though rare outcrossing events were detected in each population studied. Furthermore, the analyses of both the genetic structure of populations and the relationships …


Concentrated Flow Erodibility For Physically Based Erosion Models: Temporal Variability In Disturbed And Undisturbed Rangelands, Osama Z. Al-Hamdan, Frederick B. Pierson, Mark A. Nearing, C. Jason Williams, Jeffry J. Stone, Patrick R. Kormos, Jan Boll, Mark A. Weltz Jul 2012

Concentrated Flow Erodibility For Physically Based Erosion Models: Temporal Variability In Disturbed And Undisturbed Rangelands, Osama Z. Al-Hamdan, Frederick B. Pierson, Mark A. Nearing, C. Jason Williams, Jeffry J. Stone, Patrick R. Kormos, Jan Boll, Mark A. Weltz

Articles

Current physically based overland flow erosion models for rangeland application do not separate disturbed and undisturbed conditions in modeling concentrated flow erosion. In this study, concentrated flow simulations on disturbed and undisturbed rangelands were used to estimate the erodibility and to evaluate the performance of linear and power law equations that describe the relationship between erosion rate and several hydraulic parameters. None of the hydraulic parameters consistently predicted the detachment capacity well for all sites, however, stream power performed better than most of other hydraulic parameters. Using power law functions did not improve the detachment relation with respect to that …


Invasional Interference Due To Similar Inter- And Intraspecific Competition Between Invaders May Affect Management, Emily S.J. Rauschert, Katriona Shea Jul 2012

Invasional Interference Due To Similar Inter- And Intraspecific Competition Between Invaders May Affect Management, Emily S.J. Rauschert, Katriona Shea

Biological, Geological, and Environmental Faculty Publications

As the number of biological invasions increases, the potential for invader– invader interactions also rises. The effect of multiple invaders can be superadditive (invasional meltdown), additive, or subadditive (invasional interference); which of these situations occurs has critical implications for prioritization of management efforts. Carduus nutans and C. acanthoides, two congeneric invasive weeds, have a striking, segregated distribution in central Pennsylvania, USA. Possible hypotheses for this pattern include invasion history and chance, direct competition, or negative interactions mediated by other species, such as shared pollinators. To explore the role of resource competition in generating this pattern, we conducted three related experiments …


Efficacy And Stability Of Integrating Fungicide And Cultivar Resistance To Manage Fusarium Head Blight And Deoxynivalenol In Wheat, K. T. Willyerd, C. Li, L. V. Madden, C. A. Bradley, G. C. Bergstrom, L. E. Sweets, M. Mcmullen, J. K. Ransom, A. Grybauskas, L. Osborne, S. N. Wegulo, D. E. Hershman, K. Wise, W. W. Bockus, D. Groth, R. Dill-Macky, E. Milus, P. D. Esker, K. D. Waxman, E. A. Adee, S. E. Ebelhar, B. G. Young, P. A. Paul Jul 2012

Efficacy And Stability Of Integrating Fungicide And Cultivar Resistance To Manage Fusarium Head Blight And Deoxynivalenol In Wheat, K. T. Willyerd, C. Li, L. V. Madden, C. A. Bradley, G. C. Bergstrom, L. E. Sweets, M. Mcmullen, J. K. Ransom, A. Grybauskas, L. Osborne, S. N. Wegulo, D. E. Hershman, K. Wise, W. W. Bockus, D. Groth, R. Dill-Macky, E. Milus, P. D. Esker, K. D. Waxman, E. A. Adee, S. E. Ebelhar, B. G. Young, P. A. Paul

Department of Plant Pathology: Faculty Publications

Integration of host resistance and prothioconazole + tebuconazole fungicide application at anthesis to manage Fusarium head blight (FHB) and deoxynivalenol (DON) in wheat was evaluated using data from over 40 trials in 12 U.S. states. Means of FHB index (index) and DON from up to six resistance class–fungicide management combinations per trial (susceptible treated [S_TR] and untreated [S_UT]; moderately susceptible treated [MS_TR] and untreated [MS_UT]; moderately resistant treated [MR_TR] and untreated [MR_UT]) were used in multivariate meta-analyses, and mean log response ratios across trials were estimated and transformed to estimate mean percent control ( C ) due to the management …


The Effects Of Cytokinin On The Transcriptional Regulation Of Pin Expression In Arabidopsis Thaliana, Elizabeth Burgess Jul 2012

The Effects Of Cytokinin On The Transcriptional Regulation Of Pin Expression In Arabidopsis Thaliana, Elizabeth Burgess

Honors Theses and Capstones

The processes of cell division and differentiation are critical to the development of any multicellular organism. During the formation of plant roots these processes take place at a region of the root tip called the meristem. Cytokinin and auxin are two plant growth hormones that influence this process. Although these two growth hormones are both necessary they also appear in many ways to have an antagonistic relationship. As meristematic root cells undergo differentiation they cease dividing. It has been proposed that the size of the root meristem and thus the overall rate of root growth are determined by the balance …


Mechanisms Of Group Ii Intron Loss From The Mitochondrial Cox2 Gene Of Plants, Nancy J. Hepburn Jul 2012

Mechanisms Of Group Ii Intron Loss From The Mitochondrial Cox2 Gene Of Plants, Nancy J. Hepburn

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

It has been 35 years since the discovery of introns. Although fundamental aspects of their function and evolutionary origins have been widely studied, the mechanisms of intron loss are still an unresolved evolutionary mystery. Previously proposed mechanisms of intron loss include exonization, random genomic deletion and retroprocessing. The mitochondrial genomes of land plants have been characterized by widespread intron loss. In angiosperms, two introns located in the cox2 gene display a particularly variable intron distribution, indicating frequent loss. We took advantage of the frequent intron loss from cox2 to investigate the possible mechanisms of loss from this gene. The first …


Closely Paired Flowers Produce Single Fruit, W. John Hayden Jul 2012

Closely Paired Flowers Produce Single Fruit, W. John Hayden

Biology Faculty Publications

Perhaps one of the most striking features of partridge berry (Mitchella repens), the 2012 VNPS Wildflower of the Year, is its closely paired flowers that yield a single berry fruit (figure 1). That these fruits are double structures, formed by pairs of flowers, is revealed in the presence of two discrete rings of five sepals each on the fruit apex, or in some cases, by a single ring of 10 sepals. Viewed in isolation, without context, the nature of these double fruits may seem perplexing, but as in so many things, a comparative perspective helps to make sense …


The Pseudomonas Syringae Type Iii Secretion System: The Translocator Proteins, Their Secretion, And The Restriction Of Translocation By The Plant Immune System, Emerson Crabill Jul 2012

The Pseudomonas Syringae Type Iii Secretion System: The Translocator Proteins, Their Secretion, And The Restriction Of Translocation By The Plant Immune System, Emerson Crabill

School of Biological Sciences: Dissertations, Theses, and Student Research

Pseudomonas syringae is a Gram-negative plant pathogen whose virulence is dependent upon its type III secretion system (T3SS), a nanosyringe that facilitates translocation, or injection, of type III effector (T3E) proteins into eukaryotic cells. The primary function of P. syringae T3E proteins is suppression of plant immunity. Bacterial proteins called translocators form a translocon that forms a pore in the host plasma membrane which is traversed by T3Es. HrpK1, a putative P. syringae translocator, is a type III-secreted protein important for virulence and T3E injection, but not secretion of T3Es. Harpins are a group of proteins specific to plant pathogens …


Growing South Dakota (Summer 2012), College Of Agriculture &. Biological Sciences Jul 2012

Growing South Dakota (Summer 2012), College Of Agriculture &. Biological Sciences

Growing South Dakota (Publication of the College of Agriculture, Food and Environmental Sciences)

[Page] 2 150 Years and Counting: 2012 Marks a Significant Milestone for Land-Grant Universities [Page] 4 Summer College News
[Page] 6 Ready, Set, Grow: Gardening Programs Offer bevy of Benefits to Community
[Page] 8 SDSU Extension Staff Directory: Pull Out and Save for Future Reference
[Page] 13 Bugs Beware!: SDSU Assembles Talented Team of Entomologists
[Page] 14 High-Tech Teaching: Curriculums Now Integrate iPads, Social Media & Peer Mentoring
[Page] 16 A Lesson in Chinese: SDSU Contingent Experiences World's Largest Marketplace
[Page] 18 Here and There
[Page] 20 Adapting with Apps: Technological Advancements Offer Opportunities for Farming's Future
[Page] 21 A …


Facilitation Drives Mortality Patterns Along Succession Gradients Of Aspen-Conifer Forests, W. John Calder, Samuel B. St. Clair Jun 2012

Facilitation Drives Mortality Patterns Along Succession Gradients Of Aspen-Conifer Forests, W. John Calder, Samuel B. St. Clair

Aspen Bibliography

While it is well established that facilitation and competition are important structuring forces in plant communities, a clear understanding of the interactions between them and how they change through the life stages of plants and affect long-term plant community development is lacking. We have observed that conifer seedlings are rarely found growing in meadows but readily establish under adjacent aspen stands, particularly at the base of aspen trees, creating the potential for antagonistic interactions in later life stages. To examine these relationships and their potential consequences on forest community development, we characterized patterns of establishment, regeneration, and overstory mortality of …


Plants Having An Enhanced Resistance To Necrotrophic Pathogens And Method Of Making Same, Pradeep Kachroo, Aardra Kachroo Jun 2012

Plants Having An Enhanced Resistance To Necrotrophic Pathogens And Method Of Making Same, Pradeep Kachroo, Aardra Kachroo

Plant Pathology Faculty Patents

A method for enhancing resistance to necrotrophic and/or hemibiotrophic pathogens by overexpressing glycerol-3-phosphate dehydrogenase using an expression vector in a plant species. For example, the present method can be used to enhance resistance to C. higginsianum by overexpressing glycerol-3-phosphate dehydrogenase in a plant such as Arabidopsis plant, using an expression vector in a plant.


Evolutionary Genomics Of Mycovirus-Related Dsrna Viruses Reveals Cross-Family Horizontal Gene Transfer And Evolution Of Diverse Viral Lineages, Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Youliang Peng, Xianhong Yi, Daohong Jiang Jun 2012

Evolutionary Genomics Of Mycovirus-Related Dsrna Viruses Reveals Cross-Family Horizontal Gene Transfer And Evolution Of Diverse Viral Lineages, Huiquan Liu, Yanping Fu, Jiatao Xie, Jiasen Cheng, Said A. Ghabrial, Guoqing Li, Youliang Peng, Xianhong Yi, Daohong Jiang

Plant Pathology Faculty Publications

BACKGROUND: Double-stranded (ds) RNA fungal viruses are typically isometric single-shelled particles that are classified into three families, Totiviridae, Partitiviridae and Chrysoviridae, the members of which possess monopartite, bipartite and quadripartite genomes, respectively. Recent findings revealed that mycovirus-related dsRNA viruses are more diverse than previously recognized. Although an increasing number of viral complete genomic sequences have become available, the evolution of these diverse dsRNA viruses remains to be clarified. This is particularly so since there is little evidence for horizontal gene transfer (HGT) among dsRNA viruses.

RESULTS: In this study, we report the molecular properties of two novel dsRNA mycoviruses that …


Five Nuclear Loci Resolve The Polyploid History Of Switchgrass (Panicum Virgatum L.) And Relatives, Jimmy Triplett, Yunjing Wang, Jinshun Zhong, Elizabeth Kellogg Jun 2012

Five Nuclear Loci Resolve The Polyploid History Of Switchgrass (Panicum Virgatum L.) And Relatives, Jimmy Triplett, Yunjing Wang, Jinshun Zhong, Elizabeth Kellogg

Biology Department Faculty Works

Polyploidy poses challenges for phylogenetic reconstruction because of the need to identify and distinguish between homoeologous loci. This can be addressed by use of low copy nuclear markers. Panicum s.s. is a genus of about 100 species in the grass tribe Paniceae, subfamily Panicoideae, and is divided into five sections. Many of the species are known to be polyploids. The most well-known of the Panicum polyploids are switchgrass (Panicum virgatum) and common or Proso millet (P. miliaceum). Switchgrass is in section Virgata, along with P. tricholaenoides, P. amarum, and P. amarulum, whereas P. miliaceum is in sect. Panicum. We have …


Traversing Swanton Road, 9th Ed., James A. West Jun 2012

Traversing Swanton Road, 9th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …


Systematics Of Harrisia (Cactaceae), Alan R. Franck Jun 2012

Systematics Of Harrisia (Cactaceae), Alan R. Franck

USF Tampa Graduate Theses and Dissertations

The genus Harrisia Britton (Cactaceae) comprises species of columnar cacti that are united by a unique seed morphology. The species range in form from prostrate shrubs to large trees and are native to South America and the Caribbean region. Harrisia is placed in an unresolved position within subtribe Trichocereinae of tribe Cereeae of subfamily Cactoideae. Relationships among the species within Harrisia are also poorly understood. In this study, several species of Harrisia were sequenced for as many as seven different regions of nuclear and plastid DNA. Species in the Caribbean were also examined with amplified fragment length polymorphisms. The morphology …


The Pseudomonas Syringae Hrpj Protein Controls The Secretion Of Type Iii Translocator Proteins And Has A Virulence Role Inside Plant Cells, Emerson Crabill, Andrew Karpisek, James R. Alfano Jun 2012

The Pseudomonas Syringae Hrpj Protein Controls The Secretion Of Type Iii Translocator Proteins And Has A Virulence Role Inside Plant Cells, Emerson Crabill, Andrew Karpisek, James R. Alfano

Center for Plant Science Innovation: Faculty Publications

The bacterial plant pathogen Pseudomonas syringae injects effector proteins into plant cells via a type III secretion system (T3SS), which is required for pathogenesis. The protein HrpJ is secreted by P. syringae and is required for a fully functional T3SS. A hrpJ mutant is non-pathogenic and cannot inject effectors into plant cells or secrete the harpin HrpZ1. Here we show that the hrpJ mutant also cannot secrete the harpins HrpW1 and HopAK1 or the translocator HrpK1, suggesting that these proteins are required in the translocation (injection) of effectors into plant cells. Complementation of the hrpJ mutant with secretion incompetent HrpJ …