Digital Commons Network^™

Patch Burn‐Grazing: An Annotated Bibliography, Rajeeva Voleti, Stephen L. Winter, Sherry Leis

School of Natural Resources: Faculty Publications

Patch burn‐grazing is a rangeland management strategy that exploits the attraction of grazing animals to recently burned areas in order to achieve management objectives. When fire is applied to a landscape in a patchy manner, leaving some patches unburned, the resulting grazing animal activity, forage utilization, and animal impact are patchily distributed within that landscape as well. Areas that have been recently burned tend to be characterized by the highest levels of grazing animal activity while areas that have gone the longest without burning tend to be characterized by the lowest levels of grazing animal activity. This can be advantageous …

Prediction Of Total Phenols, Condensed Tannins, And 3-Deoxyanthocyanidins In Sorghum Grain Using Near-Infrared (Nir) Spectroscopy, Linda Dykes, Leo Hoffmann Jr., Ostilio Portillo-Ridriguez, William L. Rooney, Lloyd W. Rooney

INTSORMIL Scientific Publications

The reported high phenolic levels in sorghum have led an interest from sorghum breeding programs in developing and identifying germplasms with high phenolic levels, which require screening a large number of samples to find those with the highest levels. Since wet chemistry screening methods are slow, expensive, and destructive, the use of NIR calibration curves could be an alternative. The objectives of this project were to determine the variation range in total phenols, condensed tannins, and 3- deoxyanthocyanidin levels in a diverse set of sorghum genotypes and to assess the predictive value of NIR curves to estimate these compounds in …

Developmental Changes And H+-Atpase Co-Localization In Nepenthes Alata Peristomal Nectary Glands, Alison Carini

Biology Honors Papers

Nepenthes alata is an east-Asian species of tropical carnivorous plant more commonly known as a pitcher plant. The pitcher is a modified epiascidiate leaf used to passively capture insects as nutritious supplements to its diet. In this study, the ultrastructure of different age stages of peristomal extrafloral nectary glands were surveyed, selected ages were immunolabeled for H+-ATPases. All nectary cells had numerous mitochondria, endoplasmic reticulum, Golgi bodies, plastids, and vacuoles in a dense cytoplasm consistent with an active secretory system. The larger class of immature pitchers (approx. 4 cm in diameter, lid closed) had budding structures affecting the plasma membrane …

Identification Of Differential Agronomic Traits In Early Stage Teosinte, Flint, Dent, And Sugar (Sweet) Corn Varieties In Competition With Weeds, S.A. Hansen, S. A. Clay, David Horvath, S. Flint-Garcia

Agronomy, Horticulture and Plant Science Faculty Publications

Weed competition reduces corn yield. Today’s corn monoculture relies heavily on herbicide inputs to maintain yield. However, teosinte, corn’s ancestor, was successfully grown in mixed production systems. Harnessing genes and traits that allow teosinte to be a better competitor but which may have been lost during corn domestication could help producers reduce herbicide inputs and maintain yield. The first step to finding those genes is to identify varieties of corn and lines of teosinte that have a higher tolerance of weeds or greater weed suppressive ability. Five introductions of teosinte and 14 varieties of corn (including dent, heritage, and sweet …

"Over The River And Through The Woods": An Analysis Of Understory And Canopy Plant Diversity In Urban Riparian Forests, Carlisle R. Evans Peck

Urban Forest Project

As population growth explodes and urban areas expand, studying the ecology of urban areas has become increasingly important. Urban development has been shown to drastically alter native habitats and to severely degrade biodiversity. However, urban landscapes also hold the potential to harbor and support valuable biodiversity especially if managed correctly. We studied the understory herbaceous plant and overstory tree canopy diversity of eight forested ravines in the small cities of Rock Island and Moline IL surrounded by a range of urban development intensity. The goal of the project was to determine whether or not the composition of the plant communities …

Smith Falls State Park Forest Enhancement Project For Aspen, Mike Groenewold

Nebraska Game and Parks Commission: White Papers, Conference Presentations, and Manuscripts

A 76-mile stretch of the middle Niobrara River, which includes Smith Falls State Park, is designated as a National Scenic River. This reach of the river is referred to as the biological crossroads of the Midwest as the river’s deeply incised valley is the intersection of a diverse mix of plant communities including several forest and prairie types. The mix of forests supports a rich diversity of species including rare plants such as glacial relict aspen and paper birch.

In recent decades eastern red cedar and ponderosa pine densities have increased substantially in the middle Niobrara River due to fire …

The Effect Of Pin Reduction In Populus: The Search For The Missing Phenotype, Samuel Norcross

Biology Honors Papers

The plant hormone auxin is involved in virtually every aspect of plant growth and development. Because of its vital role in plant physiology, it is transported through controlled mechanisms. The PIN family of efflux carrier proteins are highly involved in this transport, shuttling molecules of auxin from cell to cell. This PIN-driven transport of auxin guides the differentiation of plant vasculature. In this study, I used a clonally-propagated line of the woody plant species Populus tremula x alba that had been genetically altered to induce an RNAi response against genes coding for the PIN proteins. These plants were shown to …

Overcoming India’S Food Security Challenges: The Role Of Intellectual Property Management And Technology Transfer Capacity Building, Stanley Kowalski, Aarushi Gupta, Ifica Mehra

Law Faculty Scholarship

The growth of the Indian economy after Independence has had little impact on the food security of the country. The paper analyses the development of advanced crop varieties through the use of agricultural technologies (hereinafter "agbiotech") within the technology transfer system, a framework which comprises of the interactions of intellectual property rights law and agricultural research and development in India. Through this, the author argues that agricultural innovation in India is failing due to the absence of connections within the technology transfer system and advocates for the creation of a national program aimed at advancing IP and tech-transfer capacity in …

Florida-Friendly Landscaping(Tm) Right Plant, Right Place; Integrated Pest Management; And Attracting Wildlife, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

From Algae To Angiosperms – Inferring The Phylogeny Of Green Plants ( Viridiplantae ) From 360 Plastid Genomes, Brad R. Ruhfel, Matthew A. Gitzendanner, Paula S. Soltis, Douglas E. Soltis, J. Gordon Burleigh

Biological Sciences Faculty and Staff Research

Background Next-generation sequencing has provided a wealth of plastid genome sequence data from an increasingly diverse set of green plants (Viridiplantae). Although these data have helped resolve the phylogeny of numerous clades (e.g., green algae, angiosperms, and gymnosperms), their utility for inferring relationships across all green plants is uncertain. Viridiplantae originated 700-1500 million years ago and may comprise as many as 500,000 species. This clade represents a major source of photosynthetic carbon and contains an immense diversity of life forms, including some of the smallest and largest eukaryotes. Here we explore the limits and challenges of inferring a comprehensive green …

Variability In Salt Tolerance Of Sorghum Bicolor L., Youping Sun, Genhua Niu, Pedro Osuna, Lijuan Zhao, Girisha Ganjehunte, Gary Peterson, Jose R. Peralta-Videa, Jorge L. Gardea-Torresdey

Plants, Soils, and Climate Faculty Publications

Salt tolerance of ten sorghum (Sorghum bicolor L. Moench) varieties (‘1790E’, ‘BTx642’, ‘Desert Maize’, ‘Macia’, ‘RTx430’, ‘Schrock’, ‘Shallu’, ‘Tx2783’, ‘Tx7078’, and ‘Wheatland’) was evaluated in two greenhouse experiments. In the first experiment, sorghum were sown in substrates moistened with either nutrient solution (no addition of salts, control) at electrical conductivity (EC) of 1.2 dS·m-1 or salt solution at EC 5, 10 or 17 dS·m-1. Seedling emergence percentage decreased in all varieties only at EC of 17 dS·m-1 compared to the control. Seedling emergence percentage of sorghum ‘Macia’ and ‘1790E’ irrigated with salt solution at EC of 17 dS·m-1 decreased by …

Temporal Fluctuation Scaling In Populations And Communities, Michael Kalyuzhny, Yishai Schreiber, Rachel Chocron, Curtis H. Flather, Ronen Kadmon, David A. Kessler, Nadav M. Shnerb

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Taylor’s law, one of the most widely accepted generalizations in ecology, states that the variance of a population abundance time series scales as a power law of its mean. Here we reexamine this law and the empirical evidence presented in support of it. Specifically, we show that the exponent generally depends on the length of the time series, and its value reflects the combined effect of many underlying mechanisms. Moreover, sampling errors alone, when presented on a double logarithmic scale, are sufficient to produce an apparent power law. This raises questions regarding the usefulness of Taylor’s law for understanding ecological …

Effectiveness Of Hand Removal For Small-Scale Management Of Japanese Beetles (Coleoptera: Scarabaeidae), Paul V. Switzer, Ryan M. Cumming

Faculty Research & Creative Activity

Hand removal is often recommended as a method for small-scale control of Japanese beetles (Popillia japonica Newman). In this study, we investigated the effectiveness of daily hand removal for controlling damage by Japanese beetles on grape plants. We also investigated whether the timing of the removal (at 0800, 1400, or 1900 hours, or at all 3 periods) inßuenced the effectiveness of the technique. We found that hand removal signiÞcantly lowered the number of beetles on, and consequently the damage to, grape plants relative to nonremoval controls. Of the single removal treatments, removal of beetles at 1900 hours was most effective, …

Effectiveness Of Hand Removal For Small-Scale Management Of Japanese Beetles (Coleoptera: Scarabaeidae), Paul Switzer, Ryan Cumming

Faculty Research & Creative Activity

Hand removal is often recommended as a method for small-scale control of Japanese beetles (Popillia japonica Newman). In this study, we investigated the effectiveness of daily hand removal for controlling damage by Japanese beetles on grape plants. We also investigated whether the timing of the removal (at 0800, 1400, or 1900 hours, or at all 3 periods) inßuenced the effectiveness of the technique. We found that hand removal signiÞcantly lowered the number of beetles on, and consequently the damage to, grape plants relative to nonremoval controls. Of the single removal treatments, removal of beetles at 1900 hours was most effective, …

Additional Lichen Records And Mineralogical Data From Metal-Contaminated Sites In Maine, Ian D. Medeiros, Alan M. Fryday, N. Rajakaruna

Biological Sciences

Geochemistry and mineralogy of rocks play important roles in the occurrence of individual lichen species and assembly of lichen communities. Whereas lichens of metal-enriched settings have been a focus of study for many decades, only a few such lichen inventories exist for North America. We reexamined the lichen biota of Pine Hill, a serpentine outcrop on Little Deer Isle, Maine and Callahan Mine, a copper-and zinc-enriched Superfund site in Brooksville, Maine by conducting additional field surveys and reexamining unidentified taxa from previous collections. To better characterize the substrates upon which the lichens were found, we conducted elemental analyses via x-ray …

Phenotypic And Genotypic Analysis Of A U.S. Native Fine-Leaved Festuca Population Reveals Its Potential Use For Low-Input Urban Landscapes, Jack E. Staub, Matthew D. Robbins, Yingmei Ma, Paul Johnson

CWEL Publications

Continued reduction in limited natural resources worldwide increasingly necessitates the incorporation of low-maintenance and low-input plant materials into urban landscapes. Some fine-leaved Festuca grass species have been used in formal gardens and native urban landscapes because of their inherent tolerance to abiotic stresses, but native, ornamental types (tall and non-spreading with multicolored culms and panicles) are not common in landscapes of the western United States. A native fine-leaved Festuca collection made in Montana (designated FEID 9025897) by the U.S. Natural Resources Conservation Services possesses such ornamental characteristics but has not been evaluated for its horticultural potential. Therefore, a study was …

Unprecedented Heterogeneity In The Synonymous Substitution Rate Within A Plant Genome, Andan Zhu, Wenhu Guo, Kanika Jain, Jeffrey P. Mower

Center for Plant Science Innovation: Faculty Publications

The synonymous substitution rate varies widely among species, but it is generally quite stable within a genome due to the absence of strong selective pressures. In plants, plastid genes tend to evolve faster than mitochondrial genes, rate variation among species generally correlates between the mitochondrial and plastid genomes, and few examples of intragenomic rate heterogeneity exist. To study the extent of substitution rate variation between and within plant organellar genomes, we sequenced the complete mitochondrial and plastid genomes from the bugleweed, Ajuga reptans, which was previously shown to exhibit rate heterogeneity for several mitochondrial genes. Substitution rates were accelerated specifically …

Evaluation Of Constitutive Iron Reductase (Atfro2) Expression On Mineral Accumulation And Distribution In Soybean (Glycine Max. L), Marta W. Vasconcelos, Thomas E. Clemente, Michael A. Grusak

Center for Plant Science Innovation: Faculty Publications

Iron is an important micronutrient in human and plant nutrition. Adequate iron nutrition during crop production is central for assuring appropriate iron concentrations in the harvestable organs, for human food or animal feed. The whole-plant movement of iron involves several processes, including the reduction of ferric to ferrous iron at several locations throughout the plant, prior to transmembrane trafficking of ferrous iron. In this study, soybean plants that constitutively expressed the AtFRO2 iron reductase gene were analyzed for leaf iron reductase activity, as well as the effect of this transgene's expression on root, leaf, pod wall, and seed mineral concentrations. …

Identification Of Rna Silencing Components In Soybean And Sorghum, Xiang Liu, Tao Lu, Yongchao Dou, Bin Yu, Chi Zhang

Center for Plant Science Innovation: Faculty Publications

Background: RNA silencing is a process triggered by 21–24 small RNAs to repress gene expression. Many organisms including plants use RNA silencing to regulate development and physiology, and to maintain genome stability. Plants possess two classes of small RNAs: microRNAs (miRNAs) and small interfering RNAs (siRNAs). The frameworks of miRNA and siRNA pathways have been established in the model plant, Arabidopsis thaliana (Arabidopsis).

Results: Here we report the identification of putative genes that are required for the generation and function of miRNAs and siRNAs in soybean and sorghum, based on knowledge obtained from Arabidopsis. The gene families, including …

Methylation Protects Micrornas From An Ago1- Associated Activity That Uridylates 5′ Rna Fragments Generated By Ago1 Cleavage, Guodong Ren, Meng Xie, Shuxin Zhang, Carissa Vinovskis, Xuemei Chen, Bin Yu

Center for Plant Science Innovation: Faculty Publications

In plants, methylation catalyzed by HEN1 (small RNA methyl transferase) prevents microRNAs (miRNAs) from degradation triggered by uridylation. Howmethylation antagonizes uridylation of miRNAs in vivo is not well understood. In addition, 5′ RNA fragments (5′ fragments) produced by miRNA-mediated RNA cleavage can be uridylated in plants and animals. However, the biological significance of this modification is unknown, and enzymes uridylating 5′ fragments remain to be identified. Here, we report that in Arabidopsis, HEN1 suppressor 1 (HESO1, a miRNA nucleotidyl transferase) uridylates 5′ fragments to trigger their degradation.We also show that Argonaute 1 (AGO1), the effector protein of miRNAs, interacts …

Small Rnas Meet Their Targets: When Methylation Defends Mirnas From Uridylation, Guodong Ren, Xuemei Chen, Bin Yu

Center for Plant Science Innovation: Faculty Publications

Small RNAs are incorporated into Argonaute protein-containing complexes to guide the silencing of target RNAs in both animals and plants. The abundance of endogenous small RNAs is precisely controlled at multiple levels including transcription, processing and Argonaute loading. In addition to these processes, 3' end modification of small RNAs, the topic of a research area that has rapidly evolved over the last several years, adds another layer of regulation of their abundance, diversity and function. Here, we review our recent understanding of small RNA 3' end methylation and tailing.

Long-Term Changes In Four Plant Communities Along An Elevational Gradient In The Front Range Of Colorado, Gregory J. Sproull

Electronic Theses and Dissertations

We surveyed four plant communities along an elevational gradient in the Front Range of the Colorado Rocky Mountains for long-term overstory and understory changes. Our results were compared to those found in 1981 and 1996. We evaluated changes in succession, elevational species migration and range expansion, community diversity, and composition. We related temporal floristic shifts to prior literature on disturbance history at each site. Over time, all communities changed significantly, though in different manners. This analysis shows that plant communities are changing in dynamic and idiosyncratic ways that correspond to individualistic distribution shifts. Moreover, we exhibit the necessity of comprehensively …

Botanists In The Canyonlands Of The Colorado Plateau – 1950–1983 & Prior, Stanley L. Welsh, Glen Moore

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

This paper provides an overview of botanical investigations in southeastern Utah, but is not so-restricted geographically. It grew out of the discovery of decades-old manuscripts on the flora of what became Canyonlands National Park in 1964, but from those typescript copies the coverage grew outward geographically and backward in time to the earliest inhabitants of what is today known as the Four Corners Region of the American Southwest. Reviewed is the account of utilization of the region and its natural resources by aboriginal inhabitants who were familiar with all of it. That early, and to an extent, continuous occupation …

Hanging Gardens Of The Colorado: Jewels In The Crown—Canyonlands Versus Zion Canyon, Stanley L. Welsh

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

Descriptions and types of Utah’s hanging gardens. This work includes a comparison of hanging gardens in Canyonlands versus Zion Canyon, as well as the plant and animal assemblages found there. Five types of gardens and alcoves are defined and the different types found in both national parks are described. Maps of hanging garden locations and extensive photographs of the flora and fauna are provided.

Table of Contents (abridged)

Prolog

Canyonlands Gardens

Geomorphology

Types of Gardens and Alcoves

Zion Canyon Gardens

Terrace-type Gardens

Plant Communities

Stream Courses

Geographic Affinities of Hanging Gardens

Restricted or Unusual Plants

Plant Succession

Appendix I: …

Root Growth Of Two Perennial Grass Types And Musk Thistle (Carduus Nutans) In Temperate Grasslands Of North America, Chengchou Han, Stephen L. Young

West Central Research and Extension Center, North Platte

Root architecture of prairie grasslands, which depends on plant phenology and edaphic conditions, strongly influences susceptibility to invasion by nonindigenous plant species. Field studies were conducted to compare in situ root growth patterns of warm-season (WS) and cool-season (CS) perennial grasses and musk thistle during a 2-yr period that included a drought in the second year. In 2 yr, CS grasses had the highest amount of roots (1,296 m roots m^–2 [395 ft roots ft^–2]) across shallow (0 to 28 cm [0 to 11 in.]), medium (28 to 56 cm), and deep (56 to 98 cm) depths …

Bioeconomic Factors Of Beef Heifer Maturity To Consider When Establishing Criteria To Optimally Select And/Or Retain Herd Replacements, M. C. Stockton, R. K. Wilson, D. M. Feuz, L. A. Stalker, R. N. Funston

West Central Research and Extension Center, North Platte

Understanding the biology of heifer maturity and its relationship to calving difficulty and subsequent breeding success is a vital step in building a bioeconomic model to identify optimal production and profitability. A limited dependent variable probit model is used to quantify the responses among heifer maturities, measured by a maturity index (MI), on dystocia and second pregnancy. The MI account for heifer age, birth BW, prebreeding BW, nutrition level, and dam size and age and is found to be inversely related to dystocia occurrence. On average there is a 2.2% increase in the probability of dystocia with every 1 point …

Vcu's Green Richmond Research, Nadia Rentia

AUCTUS: The Journal of Undergraduate Research and Creative Scholarship

The impact of urbanization on the dogwood tree was the VCU junior Kaitlyn Parkman’s focus as she researched hundreds of trees in Richmond.

Incorporating Risk Of Reinvasion To Prioritize Sites For Invasive Species Management, Todd R. Lookingbill, Emily S. Minor, Nadia Bukach, Joseph R. Ferrari, Lisa A. Wainger

Geography and the Environment Faculty Publications

The relationship between landscape pattern and the distribution and spread of exotic species is an important determinant of where and when management actions are best applied. We have developed an interdisciplinary approach for prioritizing treatment of harmful, nonnative, invasive plants in National Park landscapes of the Mid-Atlantic USA. The approach relies upon a detailed model of reinvasion risk that combines information on: (1) global factors representing park-level infestation from seed and sprout, (2) landscape factors including disturbance-based spread vectors and neighborhood seed density, and (3) local factors determining establishment probability based on habitat suitability. Global seed rain estimates are derived …

Bacon's Swamp- Ghost Of A Central Indiana Natural Area Past, Rebecca W. Dolan

Scholarship and Professional Work - LAS

Bacon’s Swamp was identified in the 1920s as a ca. 12 ha glacial kettle lake bog system at the southernmost limits of these habitats in Indiana. Located just 9.6 km from the center of Indianapolis, the site was all but destroyed in the mid-20th century by urban expansion. Prior to habitat conversion at the site, Bacon’s Swamp was a frequent location for Butler University ecology class field trips and student research projects. Herbarium specimens and published inventory records allow for analysis of the historical vegetation of Bacon’s Swamp using modern techniques. Floristic Quality Assessment applied to these historical records reveals …

Florida-Friendly Landscaping(Tm) Right Plant, Right Place; Integrated Pest Management; And Attracting Wildlife, John J. Pipoly Iii

Marine & Environmental Sciences Faculty Reports

No abstract provided.