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Two New Records And A Confirmation For The Vascular Flora Of Turkey, Hasan Yildirim, Yusuf Altioğlu, Ri̇yat Gül, Meli̇ha Gemi̇ci̇ Jan 2016

Two New Records And A Confirmation For The Vascular Flora Of Turkey, Hasan Yildirim, Yusuf Altioğlu, Ri̇yat Gül, Meli̇ha Gemi̇ci̇

Turkish Journal of Botany

Campanula raddeana Trautv. (Campanulaceae), based on samples collected from Çıldır (A9 Ardahan), and Galatella cretica Gand. (Asteraceae), based on samples collected from Marmaris (C1 Muğla), were recorded as new findings for the Flora of Turkey. In addition, Silene samia Melzh. & Christod. (Caryophyllaceae) was confirmed in Turkey based on samples from four localities in southwest Anatolia. Detailed descriptions, locality information, and distribution maps of the cited taxa were also given in the present study.

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Grain Sorghum Leaf Reflectance And Nitrogen Status, Akwasi A. Abunyewa, Richard B. Ferguson, Charles S. Wortmann, Stephen C. Mason Jan 2016

Grain Sorghum Leaf Reflectance And Nitrogen Status, Akwasi A. Abunyewa, Richard B. Ferguson, Charles S. Wortmann, Stephen C. Mason

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen deficiency is a common but readily managed constraint to grain yield. A quick and nondestructive detection of crop N status using remote sensing could be a means to increased N use efficiency. Research was conducted in a greenhouse in 2006 at the University of Nebraska-Lincoln to establish the relationship of spectral reflectance with N status in leaves of grain sorghum, to develop indices for interpretation of the results and to predict chlorophyll content. Nitrogen stress decreased chlorophyll meter reading and leaf N content, but increased leaf and canopy reflectance. The SPAD values were significantly increased by both water and …

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Genome-Wide Association Mapping Of Qualitatively Inherited Traits In A Germplasm Collection, Nonoy B. Bandillo, Aaron J. Lorenz, George L. Graef, Diego Jarquin, David L. Hyten, Randall L. Nelson, James E. Specht Jan 2016

Genome-Wide Association Mapping Of Qualitatively Inherited Traits In A Germplasm Collection, Nonoy B. Bandillo, Aaron J. Lorenz, George L. Graef, Diego Jarquin, David L. Hyten, Randall L. Nelson, James E. Specht

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide association (GWA) has been used as a tool for dissecting the genetic architecture of quantitatively inherited traits. We demonstrate here that GWA can also be highly useful for detecting many major genes governing categorically defined phenotype variants that exist for qualitatively inherited traits in a germplasm collection. Genome-wide association mapping was applied to categorical phenotypic data available for 10 descriptive traits in a collection of ~13,000 soybean [Glycine max (L.) Merr.] accessions that had been genotyped with a 50,000 single nucleotide polymorphism (SNP) chip. A GWA on a panel of accessions of this magnitude can offer substantial statistical …

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Dioxygenase-Encoding Atdao1 Gene Controls Iaa Oxidation And Homeostasis In Arabidopsis, Silvana Porco, Aleš Pěnčík, Afaf Rashed, Ute Voβ, Rubén Casanova-Sáez, Anthony Bishop, Agata Golebiowska, Rahul Bhosale, Ranjan Swarup, Kamal Swarup, Pavlína Penáková, Ondrej Novák, Paul E. Staswick, Peter Hedden, Andrew L. Phillips, Kris Vissenberg, Malcolm J. Bennett, Karin Ljung Jan 2016

Dioxygenase-Encoding Atdao1 Gene Controls Iaa Oxidation And Homeostasis In Arabidopsis, Silvana Porco, Aleš Pěnčík, Afaf Rashed, Ute Voβ, Rubén Casanova-Sáez, Anthony Bishop, Agata Golebiowska, Rahul Bhosale, Ranjan Swarup, Kamal Swarup, Pavlína Penáková, Ondrej Novák, Paul E. Staswick, Peter Hedden, Andrew L. Phillips, Kris Vissenberg, Malcolm J. Bennett, Karin Ljung

Department of Agronomy and Horticulture: Faculty Publications

Auxin represents a key signal in plants, regulating almost every aspect of their growth and development. Major breakthroughs have been made dissecting the molecular basis of auxin transport, perception, and response. In contrast, how plants control the metabolism and homeostasis of the major form of auxin in plants, indole-3- acetic acid (IAA), remains unclear. In this paper, we initially describe the function of the Arabidopsis thaliana gene DIOXYGENASE FOR AUXIN OXIDATION 1 (AtDAO1). Transcriptional and translational reporter lines revealed that AtDAO1 encodes a highly root-expressed, cytoplasmically localized IAA oxidase. Stable isotope-labeled IAA feeding studies of loss and …

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A Population Of Deletion Mutants And An Integrated Mapping And Exome-Seq Pipeline For Gene Discovery In Maize, Shangang Jia, Aixia Li, Kyla Morton, Penny Avoles-Kianian, Shahryar F. Kianian, Chi Zhang, David Holding Jan 2016

A Population Of Deletion Mutants And An Integrated Mapping And Exome-Seq Pipeline For Gene Discovery In Maize, Shangang Jia, Aixia Li, Kyla Morton, Penny Avoles-Kianian, Shahryar F. Kianian, Chi Zhang, David Holding

Department of Agronomy and Horticulture: Faculty Publications

To better understand maize endosperm filling and maturation, we used gamma irradiation of the B73 maize reference line to generate mutants with opaque endosperm and reduced kernel fill phenotypes, and created a population of 1788 lines including 47 Mo17 × F2s showing stable, segregating and viable kernel phenotypes. For molecular characterization of the mutants, we developed a novel functional genomics platform that combined Bulked Segregant RNA and Exome sequencing (BSREx-seq) to map causative mutations and identify candidate genes within mapping intervals. To exemplify the utility of the mutants and provide proof-ofconcept for the bioinformatics platform, we present detailed characterization of …

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Comprehensive Comparative Genomic And Transcriptomic Analyses Of The Legume Genes Controlling The Nodulation Process, Zhenzhen Qiao, Lise Pingault, Mehrnoush Nourbakhsh-Rey, Marc Libault Jan 2016

Comprehensive Comparative Genomic And Transcriptomic Analyses Of The Legume Genes Controlling The Nodulation Process, Zhenzhen Qiao, Lise Pingault, Mehrnoush Nourbakhsh-Rey, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen is one of the most essential plant nutrients and one of the major factors limiting crop productivity. Having the goal to perform a more sustainable agriculture, there is a need to maximize biological nitrogen fixation, a feature of legumes. To enhance our understanding of the molecular mechanisms controlling the interaction between legumes and rhizobia, the symbiotic partner fixing and assimilating the atmospheric nitrogen for the plant, researchers took advantage of genetic and genomic resources developed across different legume models (e.g., Medicago truncatula, Lotus japonicus, Glycine max, and Phaseolus vulgaris) to identify key regulatory protein coding genes of the nodulation …

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Comparison Of An Ultra-Low Volume (Ulv) Sprayer Against A Conventional Sprayer, For Foliar Fertiliser And Fungicide Applications In Turfgrass, Jason Connor Ferguson, Roch E. Gaussoin, John A. Eastin, Matthew D. Sousek, Greg R. Kruger Jan 2016

Comparison Of An Ultra-Low Volume (Ulv) Sprayer Against A Conventional Sprayer, For Foliar Fertiliser And Fungicide Applications In Turfgrass, Jason Connor Ferguson, Roch E. Gaussoin, John A. Eastin, Matthew D. Sousek, Greg R. Kruger

Department of Agronomy and Horticulture: Faculty Publications

Two field studies (I and II) at the University of Nebraska-Lincoln: John Seaton Anderson Turfgrass Research Facility near Mead, NE, USA, were conducted to determine if a new ultra-low volume (ULV) sprayer can apply foliar nutrient, growth regulator, and fungicide treatments, in a manner similar to that of a conventional sprayer. Treatments were applied over creeping bentgrass ‘L-93’ (Agrostis stolonifera L.) managed as a fairway at 561 l · ha−1 and 47 l · ha−1 with the conventional and ULV sprayer, respectfully. Data were collected for chlorophyll content with a chlorophyll meter, and for the normalised difference …

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Combining Forage And Cover Crop Benefits From Cool-Season Annuals In The Southeastern United States, Dustin John Smith Jan 2016

Combining Forage And Cover Crop Benefits From Cool-Season Annuals In The Southeastern United States, Dustin John Smith

LSU Master's Theses

Cow-calf operations in the southeastern United States (U.S.) are based on warm-season perennial grass pastures. Stored forage feeding during the non-grazing season constitutes more than half of a cattle operation’s annual expenses. Cool-season annuals can extend the grazing season, thereby reducing stored forage feeding. A two-year field trial was conducted to determine the forage potential of a variety of crops commonly used as winter cover crops in the southeastern U.S. The ten cover crop treatments included seven monocultures (annual ryegrass [Lolium multiflorum], rye [Secale cereal], oats [Avena sativa], triticale [Triticale hexaploide], tillage radish [Raphanus sativus], hairy vetch [Vicia villosa], crimson …

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Mechanisms, Applications, And Perspectives Of Antiviral Rna Silencing In Plants / Mecanismos, Aplicaciones Y Perspectivas Del Silenciamiento Génico De Virus En Plantas, Hernan Garcia-Ruiz, Mayra Teresa Garcia Ruiz, Sergio Manuel Gabriel Peralta, Cristina Betzabeth Miravel Gabriel, Kaoutar El-Mounadi Jan 2016

Mechanisms, Applications, And Perspectives Of Antiviral Rna Silencing In Plants / Mecanismos, Aplicaciones Y Perspectivas Del Silenciamiento Génico De Virus En Plantas, Hernan Garcia-Ruiz, Mayra Teresa Garcia Ruiz, Sergio Manuel Gabriel Peralta, Cristina Betzabeth Miravel Gabriel, Kaoutar El-Mounadi

Department of Plant Pathology: Faculty Publications

Viral diseases of plants cause important economic losses due to reduction in crop quality and quantity to the point of threatening food security in some countries. Given the reduced availability of natural sources, genetic resistance to viruses has been successfully engineered for some plant-virus combinations. A sound understanding of the basic mechanisms governing plant-virus interactions, including antiviral RNA silencing, is the foundation to design better management strategies and biotechnological approaches to engineer and implement antiviral resistance in plants. In this review, we present current molecular models to explain antiviral RNA silencing and its application in basic plant research, biotechnology and …

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Identifying Plant Functional Traits To Assist Ecological Intervention In A Drying Landscape, Ana Luiza Muler Jan 2016

Identifying Plant Functional Traits To Assist Ecological Intervention In A Drying Landscape, Ana Luiza Muler

Theses: Doctorates and Masters

Mediterranean-type ecosystems (MTEs) are among the most vulnerable to land use and climate change and many attempts are in place to restore these ecosystems. Therefore, it is necessary to assess differences in plants’ ability to withstand water-stress, including biotic interactions. Such knowledge helps us understand community assembly, which is crucial for ecological intervention. This study involved: (1) reviewing the literature on traits that can differentiate functional types; (2) adapting the methodology to measure leaf water potential at turgor loss point (πtlp) for small-leaved species; (3) using these traits to quickly identify water-use strategies of adult …

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Cytokinin Acts Through The Auxin Influx Carrier Aux1 To Regulate Cell Elongation In The Root, Ian H. Street, Dennis Matthews, Maria Yamburkenko, Ali Sorooshzadeh Jan 2016

Cytokinin Acts Through The Auxin Influx Carrier Aux1 To Regulate Cell Elongation In The Root, Ian H. Street, Dennis Matthews, Maria Yamburkenko, Ali Sorooshzadeh

Dartmouth Scholarship

Hormonal interactions are crucial for plant development. In Arabidopsis, cytokinins inhibit root growth through effects on cell proliferation and cell elongation. Here, we define key mechanistic elements in a regulatory network by which cytokinin inhibits root cell elongation in concert with the hormones auxin and ethylene. The auxin importer AUX1 functions as a positive regulator of cytokinin responses in the root; mutation of AUX1 specifically affects the ability of cytokinin to inhibit cell elongation but not cell proliferation. AUX1 is required for cytokinin-dependent changes of auxin activity in the lateral root cap associated with the control of cell elongation. Cytokinin …

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Early Seral Mixed-Conifer Forest Structure And Composition Following A Wildfire Reburn In The Sierra Nevada, Erin Alvey Jan 2016

Early Seral Mixed-Conifer Forest Structure And Composition Following A Wildfire Reburn In The Sierra Nevada, Erin Alvey

Cal Poly Humboldt theses and projects

Before the era of modern fire suppression, California’s northern Sierra Nevada mixed-conifer and yellow pine forests were self-regulating; recurring short-interval, low-mixed severity wildfires maintained forest structure and composition, which in turn exerted bottom-up controls on subsequent wildfires. As a result of fire suppression, and coupled with the effects of climate warming and other anthropogenic disturbances, the fundamental structure of mixed-conifer and yellow pine forests has shifted. Wildfires may now be increasing in size, severity, and frequency across western North America. However, little is known about the post-fire impacts of repeat wildfire on a forest after a long era of suppression. …

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Effects Of Glyphosate On Soybean Nutrition, Endophytic Colonization By Cercospora Cf. Flagellaris And Development Of Cercospora Leaf Blight, Teddy Garcia Aroca Jan 2016

Effects Of Glyphosate On Soybean Nutrition, Endophytic Colonization By Cercospora Cf. Flagellaris And Development Of Cercospora Leaf Blight, Teddy Garcia Aroca

LSU Master's Theses

Glyphosate (Roundup®, Monsanto, Inc., St. Louis, MO) is the most widely used herbicide in the world because of its broad spectrum and its efficacy in controlling annual broadleaf weeds and undesired grasses. The effect of glyphosate on mineral nutrition and plant diseases has been an important topic during the past decade, because of its controversial effects on plant mineral nutrition. In order to test the hypothesis that glyphosate affects soybean mineral nutrition, and therefore predisposes soybean to Cercospora leaf blight, six glyphosate-resistant (GR) soybean varieties were either not treated or treated with glyphosate in field experiments. Plants were then evaluated …

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Characterization Of Sulfur Chemistry In Louisiana Coastal Wetland Soils Using X-Ray Absorption Fine Structure (Xafs) Spectroscopy, Negar Dehghani Tafti Jan 2016

Characterization Of Sulfur Chemistry In Louisiana Coastal Wetland Soils Using X-Ray Absorption Fine Structure (Xafs) Spectroscopy, Negar Dehghani Tafti

LSU Master's Theses

Sulfur is one of the most abundant elements in the environment, which plays a vital role in the growth and functioning of plants and microorganisms. It is found in an extended variety of species in gases, liquid, and solid forms and present in various nature systems. Wetlands are one of the largest global sinks/sources of sulfur. Being existing in a variety of oxidation states, sulfur contributes to biogeochemical cycles of coastal wetlands through involving in humification processes as well as influence on metal sulfide formation and consequently, methanogenesis and greenhouse gas emission. In this study, we have evaluated sulfur chemistry …

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Influence Of Silicon On The Development Of Anthracnose Of Grain Sorghum, Sanjay Pokhrel Jan 2016

Influence Of Silicon On The Development Of Anthracnose Of Grain Sorghum, Sanjay Pokhrel

LSU Master's Theses

To study the effect of Silicon (Si) with and without a fungicide on anthracnose development of sorghum, several experiments were conducted in the greenhouse and field. In the initial study, different Si rates [0 (control), 0 (lime control), 200, 400, 600, 800 kg Si/ha] were used in a low-Si Alfisol to determine if inoculum densities were affected by Si levels. No differences were observed between inoculum densities of 1*105 and 1*106 conidia/ml in affecting anthracnose development in the greenhouse. Anthracnose severity was found to be lowest in plants treated with 800 kg Si/ha, regardless of inoculum density. In another study, …

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A Taxonomic Study Of The Genus Hellenocarum H.Wolff (Umbelliferae-Apioideae)Based On Morphology, Fruit Anatomy, And Molecular Data, Ekaterina Andreevna Zakharova, Eugene Vasilyevich Kljuykov, Galina Viktorovna Degtjareva, Tahir Samigullin, Uliana Alekseevna Ukrainskaya, Stephen R. Downie Jan 2016

A Taxonomic Study Of The Genus Hellenocarum H.Wolff (Umbelliferae-Apioideae)Based On Morphology, Fruit Anatomy, And Molecular Data, Ekaterina Andreevna Zakharova, Eugene Vasilyevich Kljuykov, Galina Viktorovna Degtjareva, Tahir Samigullin, Uliana Alekseevna Ukrainskaya, Stephen R. Downie

Turkish Journal of Botany

Phylogenetic relationships among the species of Hellenocarum and its close allies (Umbelliferae-Apioideae) were investigated using nuclear (ITS, ETS) and plastid (psbA-trnH intergenic spacer) DNA sequences. The results obtained were supplemented with an examination of morphology from herbarium and field-collected materials, as well as details of fruit anatomy obtained from light and scanning electron microscopy. According to the molecular data, Hellenocarum is not monophyletic. In most molecular analyses, the genus comprises 2 disparate lineages, with each lineage supported by distinct morphological characters (e.g., structure of underground organs, shape of the umbel, petal color). The first lineage includes Hellenocarum multiflorum (the type …

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Dichoropetalum Alanyensis (Apiaceae), A New Species From South Anatolia, Turkey, Bi̇lgehan Bi̇lgi̇li̇, Mehmet Sağiroğlu, Meryem Şeker, Hayri̇ Duman Jan 2016

Dichoropetalum Alanyensis (Apiaceae), A New Species From South Anatolia, Turkey, Bi̇lgehan Bi̇lgi̇li̇, Mehmet Sağiroğlu, Meryem Şeker, Hayri̇ Duman

Turkish Journal of Botany

Dichoropetalum alanyensis Bilgili, Sağıroğlu and H.Duman, a new species from South Anatolia in Turkey (Antalya-Alanya), is described and illustrated. It is closely related to D. Chryseum (Boiss. And Heldr. Ex Boiss.) Pimenov and Kljuykov, from which it differs mainly by its habit, basal leaves and lobes, and mericarp features. Diagnostic morphological characters are discussed. Notes are also given on its ecology and conservation status, together with scanning electron micrographs of mericarp surface sculpturing pattern. ITS sequences were used for DNA fingerprinting. The data were analyzed with the SEAVIEW package. Standardized data were used to generate a dendrogram that revealed the …

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Isolation And Expression Analysis Of Three Different Flowering Genes(Ttlfy, Ttap1, And Ttap2) From An Unusual Legume Species, Thermopsis Turcica, Süleyman Cenkci̇, Mustafa Kargioğlu, Alperen Dedeoğlu, Büşra Kahraman, Yaşar Karakurt Jan 2016

Isolation And Expression Analysis Of Three Different Flowering Genes(Ttlfy, Ttap1, And Ttap2) From An Unusual Legume Species, Thermopsis Turcica, Süleyman Cenkci̇, Mustafa Kargioğlu, Alperen Dedeoğlu, Büşra Kahraman, Yaşar Karakurt

Turkish Journal of Botany

LEAFY (LFY), APETALA1 (AP1), and APETALA2 (AP2) genes encode three different transcription factors that control and regulate flower initiation and development in Arabidopsis. By using 3'- and 5'-RACE analysis, we isolated and sequentially characterized TtLFY (a LEAFY-like gene), TtAP1 (a MADS-box-like gene), and TtAP2 (an AP2/ERBF-like gene) in Thermopsis turcica, an unusual endemic legume species with three free carpellated flower structure. Semiquantitative RT-PCR analysis for 18 different vegetative and reproductive tissues of T. turcica indicated TtLFY transcripts mainly in the shoot tips and young floral buds and TtAP1 transcripts in the sepals and petals; however, TtAP2 transcripts were detected in …

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First Molecular Records Of Potentially Harmful Planktonic Dinoflagellatesfrom The Southern Black Sea, Özgür Baytut, Cem Tolga Gürkanli, Eda Deni̇z, İbrahi̇m Özkoç, Ari̇f Gönülol Jan 2016

First Molecular Records Of Potentially Harmful Planktonic Dinoflagellatesfrom The Southern Black Sea, Özgür Baytut, Cem Tolga Gürkanli, Eda Deni̇z, İbrahi̇m Özkoç, Ari̇f Gönülol

Turkish Journal of Botany

The aim of this study was to identify dinoflagellate species from the Black Sea (Samsun coast) using conventional and molecular phylogenetic methods. Water samples were collected using a plankton net with 22 µm pores. Dinoflagellate cells were documented under a light microscope and were then isolated for the single-cell PCR procedure. Phylogenetic inference showed that the isolates collected from the study area were affiliated with various harmful taxa: Dinophysis acuta Ehrenberg and Phalacroma rotundatum (Claparéde & Lachmann) Kofoid & Michener from dinophysioids, and Prorocentrum compressum (Bailey) Abé ex Dodge, P. cordatum (Ostenfeld) Dodge, and P. micans Ehrenberg from prorocentroids. In …

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Arbuscular Mycorrhizal And Dark Septate Endophyte Fungal Associations In Asparagus, Muthukumar Thangavelu, Muthuraja Raji Jan 2016

Arbuscular Mycorrhizal And Dark Septate Endophyte Fungal Associations In Asparagus, Muthukumar Thangavelu, Muthuraja Raji

Turkish Journal of Botany

We studied the arbuscular mycorrhizal (AM) and dark septate endophyte (DSE) fungal associations in five species of pot-grown Asparagus (A. aethiopicus, A. densiflorus, A. setaceus, A. racemosus, and A. umbellatus). Root colonization by AM and DSE fungi and AM spore numbers in the soil were assessed. AM fungal diversity indices like species richness, Shannon-Weiner index, Simpson's index, evenness, and Jaccard's index were determined. Relationships among the fungal and soil variables were also examined. All the species of Asparagus examined were colonized by both AM and DSE fungi, and these associations have been reported for the first time in four species. …

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Heavy Metal Accumulation In Urban Soil: A Phytoextraction Method Review, Diane M. Nelson Jan 2016

Heavy Metal Accumulation In Urban Soil: A Phytoextraction Method Review, Diane M. Nelson

Dissertations, Master's Theses and Master's Reports

Lead (Pb), cadmium (Cd), and arsenic (As) are three common non-essential heavy metals found in urban soils and can prove toxic to animals, humans, and some plants at low concentrations. The main exposure pathways of heavy metals in humans are through ingestion and inhalation of soil particles and ingestion of contaminated food. When dealing with contaminated soil in urban environments, activities like urban gardening can increase the likelihood of these exposure pathways, so heavy metal toxicity from contaminated soil can become a greater risk with the increased interest in urban agriculture. The US EPA created target concentrations for these heavy …

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Chloroplast Rna-Binding Protein Rbd1 Promotes Chilling Tolerance Through 23s Rrna Processing In Arabidopsis, Shuai Wang, Ge Bai, Shu Wang, Leiyun Yang, Fen Yang, Yi Wang, Jiankang Zhu, Jian Hua Jan 2016

Chloroplast Rna-Binding Protein Rbd1 Promotes Chilling Tolerance Through 23s Rrna Processing In Arabidopsis, Shuai Wang, Ge Bai, Shu Wang, Leiyun Yang, Fen Yang, Yi Wang, Jiankang Zhu, Jian Hua

Department of Horticulture & Landscape Architecture Faculty Publications

Plants have varying abilities to tolerate chilling (low but not freezing temperatures), and it is largely unknown how plants such as Arabidopsis thaliana achieve chilling tolerance. Here, we describe a genome-wide screen for genes important for chilling tolerance by their putative knockout mutants in Arabidopsis thaliana. Out of 11,000 T-DNA insertion mutant lines representing half of the genome, 54 lines associated with disruption of 49 genes had a drastic chilling sensitive phenotype. Sixteen of these genes encode proteins with chloroplast localization, suggesting a critical role of chloroplast function in chilling tolerance. Study of one of these proteins RBD1 with an …

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Pollinator Sharing Between Mimulus Ringens And Coflowering Plant Species In Northeastern Ohio, Andrew M. Wuellner Jan 2016

Pollinator Sharing Between Mimulus Ringens And Coflowering Plant Species In Northeastern Ohio, Andrew M. Wuellner

Williams Honors College, Honors Research Projects

Competition between plants for pollinators can have serious impacts on plant reproduction; these impacts depend on many factors, such as plant abundance, plant diversity, floral abundance, pollinator abundance, and pollinator preference. The way pollinators move among and between coflowering species can tell us more about how these factors affect competition. In this study, we examine the movement patterns of flower visitors to Mimulus ringens and coflowering species in Northeastern Ohio through several types of observations. In addition, we measured the density and diversity of floral units with 20-30 meter transects across each study site. There were six total study sites, …

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Combating A Global Threat To A Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora Fijiensis (Synonym Mycosphaerella Fijiensis) Genomes Reveal Clues For Disease Control, Rafael E. Arango-Isaza, Caucasella Diaz-Trujillo, Braham Deep Singh Dhillon, Andrea L. Aerts, Jean Carlier, Charles F. Crane, Tristan V. De Jong, Ineke M. De Vries, Robert A. Dietrich, Andrew D. Farmer, Claudia Fortes Fereira, Suzana A L Garcia, Mauricio Guzmán, Richard C. Hamelin, Erika A. Lindquist, Rahim Mehrabi, Olman Quiros, Jeremy Schmultz, Harris J. Shapiro, Elizabeth Reynolds, Gabriel Scalliet, Manoel Teixeira Souza, Ioannis Stergiopoulos, Theo A J Van Der Lee, Pierre J G M De Wit, Marie Françoise Zapater, Lute Harm Zwiers, Igor V. Grigoriev, Stephen B. Goodwin, Gert Hj J Kema Jan 2016

Combating A Global Threat To A Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora Fijiensis (Synonym Mycosphaerella Fijiensis) Genomes Reveal Clues For Disease Control, Rafael E. Arango-Isaza, Caucasella Diaz-Trujillo, Braham Deep Singh Dhillon, Andrea L. Aerts, Jean Carlier, Charles F. Crane, Tristan V. De Jong, Ineke M. De Vries, Robert A. Dietrich, Andrew D. Farmer, Claudia Fortes Fereira, Suzana A L Garcia, Mauricio Guzmán, Richard C. Hamelin, Erika A. Lindquist, Rahim Mehrabi, Olman Quiros, Jeremy Schmultz, Harris J. Shapiro, Elizabeth Reynolds, Gabriel Scalliet, Manoel Teixeira Souza, Ioannis Stergiopoulos, Theo A J Van Der Lee, Pierre J G M De Wit, Marie Françoise Zapater, Lute Harm Zwiers, Igor V. Grigoriev, Stephen B. Goodwin, Gert Hj J Kema

Department of Botany and Plant Pathology Faculty Publications

Black Sigatoka or black leaf streak disease, caused by the Dothideomycete fungus Pseudocercospora fijiensis (previously: Mycosphaerella fijiensis), is the most significant foliar disease of banana worldwide. Due to the lack of effective host resistance, management of this disease requires frequent fungicide applications, which greatly increase the economic and environmental costs to produce banana. Weekly applications in most banana plantations lead to rapid evolution of fungicide-resistant strains within populations causing disease-control failures throughout the world. Given its extremely high economic importance, two strains of P. fijiensis were sequenced and assembled with the aid of a new genetic linkage map. The 74-Mb …

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Geographic Distribution And Severity Of Strobilurin Fungicide Resistance Among Rhizoctonia Solani On Rice In Southwestern Louisiana, Allysson Gayle Lunos Jan 2016

Geographic Distribution And Severity Of Strobilurin Fungicide Resistance Among Rhizoctonia Solani On Rice In Southwestern Louisiana, Allysson Gayle Lunos

LSU Master's Theses

Strobilurin fungicide resistance threatens rice production in southwestern Louisiana. Strobilurins are the often relied upon method of managing sheath blight development due to the lack of strong genetic resistance to this disease in the currently available rice germplasm. However, isolates of Rhizoctonia solani AG 1-IA causing sheath blight were reported resistant to azoxystrobin near Mowata, LA in 2011. To determine the geographic distribution and severity of azoxystrobin resistance, 40 commercial rice fields in southwestern Louisiana were sampled for isolates of R. solani. Sensitivity to pyraclostrobin and trifloxystrobin was also assessed to investigate cross-resistance. A genetic test was used to …

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A Vegetation-Based Index Of Biotic Integrity For Wetlands Of Kentucky, Noelle Newman Smith Jan 2016

A Vegetation-Based Index Of Biotic Integrity For Wetlands Of Kentucky, Noelle Newman Smith

Online Theses and Dissertations

Wetland ecosystems have experienced severe declines across the United States, prompting efforts to assess the status of remaining wetlands and regulate their development. The Clean Water Act and the policy of “No Net Loss” have resulted in a system of permitting and mitigation for impacts to wetlands. Professional judgments of wetland quality are inherent in regulatory decisions related to preservation and mitigation, but many states, and until recently including Kentucky, have no standard, quantifiable means of assessing wetlands to guide the decision process. A rapid assessment method has recently been developed for Kentucky, but there is no intensive assessment method …

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Relationships Between Some Endogenous Signal Compounds And The Antioxidantsystem In Response To Chilling Stress In Maize (Zea Mays L.) Seedlings, Nevzat Esi̇m, Ökkeş Atici Jan 2016

Relationships Between Some Endogenous Signal Compounds And The Antioxidantsystem In Response To Chilling Stress In Maize (Zea Mays L.) Seedlings, Nevzat Esi̇m, Ökkeş Atici

Turkish Journal of Botany

This study investigated the correlation between endogenous levels of some signal compounds [nitric oxide (NO), salicylic acid (SA), abscisic acid (ABA)] and the antioxidant system in response to chilling stress in maize (Zea mays L.). Seedlings grown for 12 or 19 days under normal conditions (24/20 °C) were exposed to chilling stress (10/7 °C) for 2 days. The levels of NO, SA, ABA, hydrogen peroxide (H2O2), superoxide anion (O2.-), and malondialdehyde (MDA) were determined in leaves of seedlings harvested on day 14 and day 21. In the same seedlings, the activities of superoxide dismutase (SOD), peroxidase (POX), catalase (CAT), and …

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A New Species Of Cyathus (Agaricaceae) From India, Kanad Das, Manoj Emanuel Hembrom, Arvind Parihar, Rui Lin Zhao Jan 2016

A New Species Of Cyathus (Agaricaceae) From India, Kanad Das, Manoj Emanuel Hembrom, Arvind Parihar, Rui Lin Zhao

Turkish Journal of Botany

The Acharya Jagadish Chandra Bose Indian Botanic Garden is a well-known botanical garden. Cyathus thindii, a new species of bird's nest fungus, was collected from this garden, and is described and illustrated in the present paper. It is distinct with its sessile basidiomata growing on a white mycelial pad, plicate exterior (partly) and interior wall of the peridium, comparatively large peridioles without tunica, and medium sized spores. Its relation with allied taxa is discussed and a provisional key to the Indian species of Cyathus is given in the present paper.

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Assessment Of Resistance Gene Analog, Peroxidase, And Wrky Genepolymorphisms In The Genus Lens Miller, Duygu Sari, Nedi̇m Mutlu, Cengi̇z Toker Jan 2016

Assessment Of Resistance Gene Analog, Peroxidase, And Wrky Genepolymorphisms In The Genus Lens Miller, Duygu Sari, Nedi̇m Mutlu, Cengi̇z Toker

Turkish Journal of Botany

Resistance gene analogs (RGAs), peroxidases (POXs), and WRKY transcription factors are gene families related to stress-response pathways that regulate enhancement of stress tolerance in crop plants. In this study, the polymorphisms of these gene families were determined in the genus Lens Miller and Vicia montbretii (Fish. And Mey) Davis and Plitmann. A total of 32 genotypes of 7 lentil taxa, including 1 accession of cultivated lentil (Lens culinaris Medik. Subsp. culinaris), 11 accessions of L. Culinaris subsp. Orientalis (Boiss.) Ponert, 3 accessions of L. Culinaris subsp. Tomentosus Ladiz., 4 accessions of L. Culinaris subsp. Odemensis Ladiz., 3 accessions of L. …

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Foliar N And P Resorption And Nutrient (N, P, C, And S) Contents Of Vaccinium Arctostaphylos L. And Vaccinium Myrtillus L. From East Black Sea Region Of Turkey, Ali̇ Bi̇lgi̇n, Yasemi̇n Zeren, Şule Güzel Jan 2016

Foliar N And P Resorption And Nutrient (N, P, C, And S) Contents Of Vaccinium Arctostaphylos L. And Vaccinium Myrtillus L. From East Black Sea Region Of Turkey, Ali̇ Bi̇lgi̇n, Yasemi̇n Zeren, Şule Güzel

Turkish Journal of Botany

Phosphorus (P), nitrogen (N), carbon ©, and sulfur (S) contents of the leaves and specific leaf area (SLA), leaf mass per area (LMA), and N and P resorption were researched in Vaccinium arctostaphylos L. And Vaccinium myrtillus L., economically important for the East Black Sea region of Turkey. The leaves samples were collected from Solaklı Valley in Trabzon at 60 to 1800 m for V. Arctostaphylos L. And 2100 to 2300 m for V. Myrtillus L. The N, C, and S contents were determined by Dumas method and P concentration by the stannous chloride method. Nutrient contents, SLA, and LMA …

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