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Toward A Comprehensive Model Of Photosystem Ii Oxygen Evolving Complex Photoassembly, James Scott Board Ii

Theses, Dissertations and Capstones

Elucidating the mechanism of photoassembly of the oxygen-evolving complex (OEC) will lead to a better understanding of how nature catalyzes water oxidation. Although the temperature dependence of oxygen evolution has been described in the literature [1,2], we have performed a comprehensive study that covers Photosystem II (PSII) activity oxygen evolution in the presence and absence of 2,6-dichloro-1,4benzoquinone (DCBQ) from 5–45°C. In addition, we performed similar measurements for OEC photoassembly in the absence of DCBQ. PSIIenriched particles used for our measurements were prepared according to Berthold, Babcock, and Yocum[3], with modifications from Kolling, et al.[4] The oxygen-evolution of intact BBY particles …

A Remote Sensing And Gis-Based Wetland Analysis In Canaan Valley, West Virginia, Yisha Shi

Theses, Dissertations and Capstones

With the increasing influence in climate change and human activity, more and more people have begun to recognize the benefits of wetlands. However, there was a continuous annual net loss in the wetlands area since 1980s. Many programs have been implemented to monitor the status and trend of wetlands recently. In West Virginia, the wetlands area is a small portion of the State’s land, but it plays a key role in the whole ecosystem. This research aimed to detect the land cover and vegetation changes focusing on Canaan Valley area, which represents the greatest wetlands area of West Virginia. Remote …

Using Stable Isotope Analysis Of Zooplankton To Document Trophic And Biogeochemical Changes In The San Francisco Estuary, Steven C. Westbrook, Julien Moderan

STAR Program Research Presentations

Zooplankton represent a vital link between phytoplankton and fish, like the endangered Delta Smelt. Human interferences (nitrates from waste water, flow alteration, invasive species introduction…) have altered the structure of the San Francisco Estuary (SFE) ecosystem. We use stable isotope analysis to improve our knowledge of the planktonic food web in the SFE and gain insights into its evolution over the past decades. We use the ratios of certain isotopes (Nitrogen, Carbon, Sulfur, etc.) in different species of zooplankton to tell us what it is feeding on as well as the trophic level it feeds in. My research focused on …

A National Approach For Integrating Wildfire Simulation Modeling Into Wildland Urban Interface Risk Assessments Within The United States, Jessica R. Haas, David E. Calkin, Matthew P. Thompson

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Ongoing human development into fire-prone areas contributes to increasing wildfire risk to human life. It is critically important, therefore, to have the ability to characterize wildfire risk to populated places, and to identify geographic areas with relatively high risk. A fundamental component of wildfire risk analysis is establishing the likelihood of wildfire occurrence and interaction with social and ecological values. A variety of fire modeling systems exist that can provide spatially resolved estimates of wildfire likelihood, which when coupled with maps of values-at-risk enable probabilistic exposure analysis. With this study we demonstrate the feasibility and utility of pairing burn probabilities …

Native Grass And Forb Establishment In Post-Agricultural Soil, Courtney D. Hall

Electronic Theses and Dissertations

Restoration of degraded and abandoned agricultural land in arid and semiarid climates is a global problem. The erratic patterns of precipitation these lands experience makes restoration of a plant community difficult. Application of supplemental irrigation and inoculation with arbuscular mycorrhizal fungi (AMF) are two restoration techniques that have been suggested to overcome deficits in natural precipitation. The effects and the interactions of irrigation and seeding date on the ground cover of intended species and unintended exotic species were tested in a post-agricultural restoration experiment in south-central Colorado, USA. The greatest ground cover of intended species and lowest ground cover of …

Ua12/13 Big Red, Small Planet, Christian Ryan-Downing , Editor, Leslie North , Editor

Sustainability Publications and Resources

At WKU, “The Spirit Makes the Master”. Our commitment to continuous improvement is clearly reflected in our sustainability efforts. WKU’s commitment to sustainability, whether demonstrated in campus operations or in educational programs, helps to ensure that our graduates are prepared to address the complicated environmental, social and economic issues we face today. They will be able to think critically, solve problems creatively and be engaged citizens. If that’s all we accomplish then we will have achieved great success. But our sustainability commitment pays dividends, as it also leads us to reduce our environmental footprint, practice social responsibility, and conserve natural …

Synergistic Effects Of The Invasive Chinese Tallow (Triadica Sebifera) And Climate Change On Aquatic Amphibian Survival, Daniel Saenz, Erin M. Fucik, Matthew Kwiatkowski

Faculty Publications

Changes in climate and the introduction of invasive species are two major stressors to amphibians, although little is known about the interaction between these two factors with regard to impacts on amphibians. We focused our study on an invasive tree species, the Chinese tallow (Triadica sebifera), that annually sheds its leaves and produces leaf litter that is known to negatively impact aquatic amphibian survival. The purpose of our research was to determine whether the timing of leaf fall from Chinese tallow and the timing of amphibian breeding (determined by weather) influence survival of amphibian larvae. We simulated a …

A Polygon-Based Modeling Approach To Assess Exposure Of Resources And Assets To Wildfire, Matthew P. Thompson, Joe Scott, Jeffrey D. Kaiden, Julie W. Gilbertson-Day

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Spatially explicit burn probability modeling is increasingly applied to assess wildfire risk and inform mitigation strategy development. Burn probabilities are typically expressed on a per-pixel basis, calculated as the number of times a pixel burns divided by the number of simulation iterations. Spatial intersection of highly valued resources and assets (HVRAs) with pixel-based burn probability estimates enables quantification of HVRA exposure to wildfire in terms of expected area burned. However, statistical expectations can mask variability in HVRA area burned across all simulated fires. We present an alternative, polygon-based formulation for deriving estimates of HVRA area burned. This effort enhances investigations …

The Value And Propriety Of Reintroduction As A Conservation Tool For Rare Plants, Edward O. Guerrant Jr.

Environmental Science and Management Faculty Publications and Presentations

Three recent reviews of reintroduction for conservation purposes, which draw on substantial and largely non-overlapping data sets, have come to strikingly different conclusions about its value. One concludes that “reintroduction is generally unlikely to be a successful conservation strategy as currently conducted.” Another that “…this review cannot conclusively comment on the effectiveness of re-introductions…” The third concludes there is “strong evidence in support of the notion that reintroduction, especially in combination with ex situ conservation, is a tool that can go a long way toward meeting the needs it was intended to address.” The argument over the conservation value of …

Uses Of Phage Display In Agriculture: Sequence Analysis And Comparative Modeling Of Late Embryogenesis Abundant Client Proteins Suggest Protein-Nucleic Acid Binding Functionality, Rekha Kushwaha, A. Bruce Downie, Christina M. Payne

Horticulture Faculty Publications

A group of intrinsically disordered, hydrophilic proteins-Late Embryogenesis Abundant (LEA) proteins-has been linked to survival in plants and animals in periods of stress, putatively through safeguarding enzymatic function and prevention of aggregation in times of dehydration/heat. Yet despite decades of effort, the molecular-level mechanisms defining this protective function remain unknown. A recent effort to understand LEA functionality began with the unique application of phage display, wherein phage display and biopanning over recombinant Seed Maturation Protein homologs from Arabidopsis thaliana and Glycine max were used to retrieve client proteins at two different temperatures, with one intended to represent heat stress. From …

Critical Research Needs For Successful Food Systems Adaptation To Climate Change, Michelle Miller, Molly Anderson, Charles A. Francis, Chad Kruger, Carol Barford, Jacob Park, Brent H. Mccown

Department of Agronomy and Horticulture: Faculty Publications

There is a growing sense of the fragility of agricultural production in the Global North and South and of increasing risks to food security, as scientific observations confirm significant changes in the Gulf Stream, polar ice, atmospheric CO₂, methane release, and other measures of climate change. This sense is heightened as each of us experiences extreme weather, such as the increasing frequency of droughts, floods, unseasonal temperatures, and erratic seasonality. The central research challenge before us is how global, national, regional, and local food systems may adapt to accelerating climate change stresses and uncertainties to ensure the availability, …

Distribución De La Herpetofauna En Cuatro Tipos De Vegetación Del Estado De Hidalgo, México, Uriel Hernández-Salinas, Aurelio Ramírez-Bautista

Estudios científicos en el estado de Hidalgo y zonas aledañas

Este estudio se realizó en un periodo de un año (2007-2008), con el propósito de elaborar una lista de especies de anfibios y reptiles que habitan en cuatro tipos de vegetación: bosque mesófilo de montaña (BMM), bosque de pino-encino (BPE), matorral xerófilo (MX) y bosque tropical perennifolio (BTP) del estado de Hidalgo, y comparar la riqueza de especies entre éstos. Se encontró que el MX fue el tipo de vegetación con la menor riqueza de especies (H = 2.942), mientras que el BMM presentó la mayor de riqueza (H = 3.267). El BTP y el BPE fue la combinación vegetal …

Evaluation Of Cover Crops In High Tunnel Vegetable Rotation, Tyler A. Patrick, Neal Mays, Jason Mcafee, Curt R. Rom

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Organic vegetable production within high tunnels allows for an extended growing season, crop protection, and environmental control. The USDA National Organic Program (NOP) standards mandate evidence that the soil has been maintained and improved over the course of production. Previous studies have indicated the potential of cover crops for reducing competitive vegetation, and improving soil quality, thus resulting in greater plant growth, nutrient uptake, and yield. However, there has been limited work in the confines of high tunnels as part of a tunnel-system rotation. Ten nitrogen-fixing and ten non-legume cover crops were established under a high tunnel and evaluated for …

Evaluating The Sustainability Of Four Organic Vegetable Production Systems, Delia W. Scott

Theses and Dissertations--Plant and Soil Sciences

A field study evaluating the sustainability of four organic vegetable production systems was conducted in Lexington, Kentucky in 2006 and 2007. The four systems included no-till, raised beds covered with biodegradable black mulch, bare ground with shallow cultivation, and bare ground with shallow cultivation and wood chip mulch. The two-year study compared yield, weed control, labor, and costs associated with each system, as well as physical, chemical, and microbiological soil characteristics. In 2006, tomatoes (Lycopersicon esculentum Mill.) were grown in the four systems, with no significant difference in yield. Summer squash (Cucurbita pepo L.) was grown in the …

Threshold Responses Of Forest Birds To Landscape Changes Around Exurban Development, Todd R. Lookingbill, Marcela Suarez-Rubio, Scott Wilson, Peter Leimgruber

Geography and the Environment Faculty Publications

Low-density residential development (i.e., exurban development) is often embedded within a matrix of protected areas and natural amenities, raising concern about its ecological consequences. Forest-dependent species are particularly susceptible to human settlement even at low housing densities typical of exurban areas. However, few studies have examined the response of forest birds to this increasingly common form of land conversion. The aim of this study was to assess whether, how, and at what scale forest birds respond to changes in habitat due to exurban growth. We evaluated changes in habitat composition (amount) and configuration (arrangement) for forest and forest-edge species around …

A Land Data Assimilation System (Ldas) Based Dataset For Regional Agro-Climatic Assessments, Xing Liu

Open Access Theses

This study is part of a USDA sponsored project ----Useful to Usable (U2U): "Transforming Climate Variability and Change Information for Cereal Crop Producers". The broader objective includes improving farm resilience and profitability in the U.S. Corn Belt region by transforming existing climate/weather data into usable knowledge and tools for the agricultural community.

The specific tasks of this research are: (1) Build a high-resolution (4 km, daily) agro-climatic dataset using a Land Data Assimilation System (LDAS). (2) Estimate regional corn yield across the Corn Belt with crop models and the agro-climatic dataset. (3) Evaluate the impacts of climate variability due to …

Slurry Seeding Cover Crops, Edwin Alexander Suarez

Open Access Theses

Cover crops improve soil quality through increased organic matter, biological activity, aggregate stability, water infiltration, and nutrient cycling. Slurry seeding, the co-application of cover crop seed and swine (Sus domesticus) manure, is a new practice that saves fuel, time and labor. High salinity and/or ammonia, among other components in swine manure, may reduce cover crop seed germination and limit the use of slurry seeding. Ten cover crop species were evaluated to compare the effects of swine manure components on cover crop seed germination. Seed germination percentages and rates were affected by swine manure but not by equivalent salinity levels established …

Developing White Ash With Resistance To The Emerald Ash Borer, Kaitlin Joy Palla

Open Access Theses

Hypocotyls isolated from mature embryos germinated on Murashige and Skoog (MS) medium supplemented with 22.2 µM 6-benzyladenine (BA) and 0.5 µM thidiazuron (TDZ) were transformed using Agrobacterium tumefaciens strain EHA105 harboring the pBI121-8D2 vector containing the neomycin phosphotransferase (nptII) gene and a full length, codon-optimized Bacillus thuringiensis Cry8Da protoxin gene (cry8D2). Explants were transformed in a bacterial suspension with 100 µM acetosyringone using 90 s sonication and 10 min vacuum-infiltration. Four independent lines of transformed shoots were selectively regenerated on MS medium with 22.2 µM BA, 0.5 µM TDZ, 50 mg L^-1 adenine sulfate, 10% …

Fate Of 17Α-Estradiol, 17Β-Estradiol, And Estrone In Agricultural Soils And Sediments, Michael L. Mashtare Jr

Open Access Dissertations

The shift to concentrated animal production facilities and increasing rural-urban migration has increased the localized land application of nearly 1 billion tons of manure and biosolids annually. Although these applications provide nutrients and contribute to soil tilth, they also serve as a source for an estimated 49 tons of the natural manure-borne estrogens, 17α-estradiol (17α-E2), 17β-estradiol (17β-E2), and estrone (E1). While these estrogens are critical to endocrine systems, the low concentrations observed in the environment can disrupt endocrine function in non-target organisms, e.g., altering secondary sex characteristics which can lead to changes in wildlife communities.

Research presented here focuses on …

Spatial Pattern Analysis Of Peganum Harmala On The Salted Lower Chelif Plain, Algeria, Adda Ababou, Mohammed Chouieb, Abdelkader Bouthiba, Djamel Saidi, Mahfoud M'Hamedi Bouzina, Khalladi Mederbal

Turkish Journal of Botany

Peganum harmala L. (Zygophyllaceae), native to arid and semiarid rangeland, has been widely studied biochemically, pharmaceutically, and medicinally, but is largely unknown ecologically. In the lower Chelif, Algeria, this plant is largely present and shows a clear clumped pattern, which indicates the strong effects of environmental conditions. Our redundancy analysis showed that the geographic distribution of this species was positively correlated with sand and pH and negatively correlated with conductivity, Na^+, and clay. The Gaussian model suggested that 9.4 mmhos/cm conductivity and sand contents greater than 40% are optimum for this plant. The spatial distribution map obtained through the kriging …

Succession Of Epiphytic Bryophytes In Cedrus Libani Forest On The Meydan Plateau (Aladağ), Tülay Ezer, Recep Kara

Turkish Journal of Botany

The succession of epiphytic bryophytes was investigated in Cedrus libani A.Rich. forest on the Meydan Plateau (Aladağ). A total of 19 taxa (16 mosses, 3 liverworts) were recorded in 90 sampling relevés, 4 dm^2 each. Index of ecological significance (IES) was used to evaluate the ecological importance of the taxa in epiphytic habitats on tree trunks. Additionally, the epiphytic bryophyte succession of the cedar forest was analysed using multivariate classification techniques (TWINSPAN and DECORANA). The multivariate analysis results showed that the epiphytic bryophyte communities were divided into 2 main groups and 5 different subgroups associated with successional gradient. Moreover, habitat …

Qtl Mapping Of Some Productivity And Fibre Traits In Gossypium Arboreum, Tayyaba Shaheen, Yusuf Zafar, Mehboob-Ur Rahman

Turkish Journal of Botany

This study explains the construction of an intraspecific genetic linkage map of the A-genome diploid cotton with simple sequence repeat (SSR) and randomly amplified polymorphic DNA (RAPD) markers, using 180 F_2 plants derived from the cross of 2 Gossypium arboreum cotton cultivars (Ravi × Entry-17). Polymorphisms between the 2 parents were detected using 1089 pairs of SSR primers and 520 RAPD primers. In total, 34 pairs of SSR primer-amplified and 18 RAPD primer-amplified polymorphic loci were selected to survey the F2 population. In total, 52 polymorphic DNA fragments were generated and used to construct a linkage map with JoinMap 3.0. …

Plant Community Composition And Structure Monitoring For Agate Fossil Beds National Monument, 2012 Annual Report, Isabel W. Ashton, Stephen K. Wilson, Daniel J. Swanson, Michael Prowatzke, Phil Graeve

United States National Park Service: Publications

Executive Summary

Agate Fossil Beds National Monument (AGFO) plays a vital role in protecting and managing some of the last remnants of native mixed-grass prairie in the region. The Northern Great Plains Inventory & Monitoring Network (NGPN) and Fire Ecology Program (FireEP) surveyed 12 long-term monitoring plots in Agate Fossil Beds National Monument in 2012 as part of an effort to better understand the condition of plant communities in the park. We measured plant diversity and cover, looked for the presence of exotic species that may be newly invading the park, and evaluated the amount of human and natural disturbance …

Influence Of Organic Groundcovers On Mycorrhizal Colonization And Symbiosis Of Organically Managed Fruit Crops, Raven Anai Bough, Curt R. Rom

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Ground covers have the potential to impact the crop rhizosphere biology, which includes organisms such as arbuscular mycorrhizal fungi (AMF), which in turn affect the crop host plant through symbiosis. There has been evidence that a ground cover that provides a suitable environment for colonization of AMF and subsequent symbiosis could be a tool in organic fruit production. The objective of this research was to compare colonization of AMF in strawberry plant (Frageria x ananassa cv. Radiance) and apple rootstocks (Malus x domestica, cv. M. 26) grown in a greenhouse affected by various ground cover treatments. Inoculation was achieved by …

The Influence Of Poultry Litter Biochar On Early Season Cotton Growth, Taylor D. Coomer, David E. Longer, Derrick M. Oosterhuis, Dimitra A. Loka

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Cotton is known for being sensitive to cool, wet soils, especially in the early stages of growth. Amendments to soil can aid cotton seedlings in development and nutrient uptake. However, soil amendments can be costly and detrimental to the environment, and alternatives such as the addition of biochar have been considered. Biochar is produced from biomass that has gone through pyrolysis and has been shown to improve plant yield, microbial response, soil structure, soil cation–exchange capacity, and water use efficiency. This study was conducted to evaluate the effect of biochar on early season cotton growth. The aim of this study …

Karyological Studies Of 10 Cirsium Sect. Epitrachys (Asteraceae) Species From Turkey, Eda Yüksel, Yaşar Kiran, Ahmet Şahi̇n, Bayram Yildiz, Turan Arabaci

Turkish Journal of Botany

Detailed karyotype properties were established for 10 Cirsium Mill. sect. Epitrachys DC. species distributed in Turkey. The species Cirsium ligulare Boiss., C. sintenisii Freyn, C. boluënse P.H.Davis & Parris, C. eriophorum (L.) Scop., C. steirolepis Petr., C. baytopae P.H.Davis & Parris, C. poluninii P.H.Davis & Parris, C. ciliatum (Murray) Moench subsp. szovitsii (K.Koch) Petr., C. ellenbergii Bornm., and C. vulgare (Savi) Ten. have the somatic chromosome number 2n = 2x = 34, whereas C. sintenisii and C. vulgare showed 2n = 4x = 68. The chromosome numbers of C. sintenisii, C. boluënse, C. baytopae, C. poluninii, and C. ellenbergii are …

Classification Of Camellia Species From 3 Sections Using Leaf Anatomical Data With Back-Propagation Neural Networks And Support Vector Machines, Wu Jiang, Bi̇llur Barshan Özaktaş, Nitin Mantri, Zhengming Tao, Hongfei Lu

Turkish Journal of Botany

Leaf characteristics provide many useful clues for taxonomy. We used a back-propagation artificial neural network (BP-ANN) and C-support vector machines (C-SVMs) to classify 47 species from 3 sections of genus Camellia (16 from sect. Chrysanthae, 16 from sect. Tuberculata, and 15 from sect. Paracamellia). The classification model was constructed based on 7 leaf anatomy attributes including, area of adaxial epidermal cell, thickness of adaxial epidermal cell, thickness of palisade parenchyma, thickness of total leaf, thickness of spongy parenchyma, thickness of abaxial epidermal cell, and area of abaxial epidermal cell. Model parameters of C-SVM, comprising regularization parameter (C) and kernel parameter …

Overexpression/Silencing Of Selected Soybean Genes Alters Resistance To Pathogens, Mohamed H. El-Habbak

Theses and Dissertations--Plant Pathology

Plant diseases remain a major obstruction to meeting the world’s increased demand for soybean oil and protein. Reducing the losses caused by diseases in order to improve crop production is a high priority for agricultural research. The need for novel strategies for plant disease control cannot be overstated. In the present study, selected defense-related genes were silenced and/or overexpressed in soybean using a virus-based vector and the resultant plants were tested for their responses to pathogens. The first part of the study focused on Rps1k (Resistance to Phytophthora sojae) gene. The two conserved domains encoding ‘P-Loop NTPase’ and ‘PLN03210’ …

Confirmation Of Allelopathic Chemicals From Reed Canarygrass (Phalaris Arundinacea L.) Roots, Alexander Richard Tomes

All Graduate Theses, Dissertations, and Other Capstone Projects

Reed Canarygrass (Phalaris arundinacea) is an invasive species and a major threat to grasslands and natural wetlands on nearly every landmass (Morrison and Molofsky 1998). Methanol extracts of whole and macerated Reed Canarygrass roots have been found to reduce the germination and growth of lettuce (Lactuca sativa), radish (Raphanus sativus), and the aquatic plant, Reed Mannagrass (Glyceria maxima) (Veit and Proctor 2009). Linoleic, linolenic and palmitic acids were identified in the methanol extracts of both the whole and macerated Reed Canarygrass roots (Proctor 2011). The purpose of this research was to determine if these chemicals individually and in combination would …

Managing Soil Microbial Communities With Organic Amendments To Promote Soil Aggregate Formation And Plant Health, Shawn T. Lucas

Theses and Dissertations--Plant and Soil Sciences

The effects of managing soil with organic amendments were examined with respect to soil microbial community dynamics, macroaggregate formation, and plant physio-genetic responses. The objective was to examine the possibility of managing soil microbial communities via soil management, such that the microbial community would provide agronomic benefits. In part one of this research, effects of three amendments (hairy vetch residue, manure, compost) on soil chemical and microbial properties were examined relative to formation of large macroaggregates in three different soils. Vetch and manure promoted fungal proliferation (measured via two biomarkers: fatty acid methyl ester 18:2ω6c and ergosterol) and also stimulated …