Digital Commons Network^™

Soydb: A Knowledge Database Of Soybean Transcription Factors, Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng

Department of Agronomy and Horticulture: Faculty Publications

Background: Transcription factors play the crucial rule of regulating gene expression and influence almost all biological processes. Systematically identifying and annotating transcription factors can greatly aid further understanding their functions and mechanisms. In this article, we present SoyDB, a user friendly database containing comprehensive knowledge of soybean transcription factors.

Description: The soybean genome was recently sequenced by the Department of Energy-Joint Genome Institute (DOE-JGI) and is publicly available. Mining of this sequence identified 5,671 soybean genes as putative transcription factors. These genes were comprehensively annotated as an aid to the soybean research community. We developed SoyDB - a knowledge database …

Pollen Interception By Linyphiid Spiders In A Corn Agroecosystem: Implications For Dietary Diversification And Risk-Assessment, Julie A. Peterson, Susan Romero, James D. Harwood

West Central Research and Extension Center, North Platte

Dietary diversification, including consumption of plant tissues such as pollen, can enhance the fecundity of generalist predators, resulting in improved control of pest prey. Supplemental pollen feeding has been observed in many natural enemies, including sheet-web spiders (Araneae: Linyphiidae), which represent a major component of food webs in agroecosystems. Their horizontal, ground-based webs have the potential to intercept pollen grains during anthesis of crop plants, providing the opportunity for consumption of pollen to occur. In laboratory feeding trials, Frontinella communis and Tennesseellum formicum (Araneae: Linyphiidae) readily fed on pollen grains dusted on their webs, with 82 and 92% of spiders …

Comparative Leaf Decomposition Rates Including A Non-Native Species In An Urban Ozark Stream, Sarah E. Lewis, Arthur V. Brown

Journal of the Arkansas Academy of Science

Leaf decomposition of three species of native Ozark vegetation was compared to that of one nonnative invasive species. Leaves were placed in an urban gravel-bed stream for 23 days. Changes in mass and condition of the leaves were assessed along with stream temperature, flow, width, depth and discharge. Species native to Eastern North American forests were sycamore (Platanus occidentalis), dogwood (Cornus florida), and redbud (Cercis canadensis). The nonnative species, Japanese (Amur) honeysuckle (Lonicera maackii) comprised approximately 80% of the understory vegetation within the riparian zone of the study reach. After 23 days, Sycamore lost 24.6% mass, dogwood lost 30%, redbud …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Letter From The Dean, Michael Vayda

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Journals Of Travels, Stanley L. Welsh

Books by Faculty of the Monte L. Bean Life Science Museum

Abstract

It is unfortunate that journals were not kept routinely for all of my [Stanley L. Welsh] expeditions that resulted in collections of plants that formed the bases for publications over the years. Only the record books and the specimens document most of the trips, and they are without detail of the events leading up to them or of those that transpired on them. The journals reproduced here show good intentions, which unfortunately were not fulfilled subsequently. The early field trips from Iowa State, accompanied by Dennis Anderson set the tone for later trips to Alaska, in 1965, 1966, 1968, …

Soil And Root Populations Of Fluorescent Pseudomonas Spp. Associated With Seedlings And Field-Grown Plants Are Affected By Sorghum Genotype, Deanna L. Funnell-Harris, Jeffrey F. Pedersen, Scott E. Sattler

Department of Plant Pathology: Faculty Publications

Sorghum [Sorghum bicolor (L.) Moench] is valued for bioenergy, feed and food. Potential of sorghum genotypes to support differing populations of root- and soil-associated fluorescent Pseudomonas spp. or Fusarium spp., in two soils, was assessed. Culturable pseudomonads were enumerated from roots and soil of sorghum (Redlan and RTx433) and wheat (Lewjain) seedlings repeatedly grown in cycled soils in the growth chamber. Pseudomonads and Fusarium spp. were assessed from roots and soil of field-grown sorghum along with biological control traits hydrogen cyanide (HCN) and 2,4-diacetylphlorogluconol (phl) production. After four 4-week cycles, soil associated with Redlan seedlings had greater numbers …

Brown Midrib Mutations And Their Importance To The Utilization Of Maize, Sorghum, And Pearl Millet Lignocellulosic Tissues, Scott E. Sattler, Deanna L. Funnell-Harris, Jeffrey F. Pedersen

Department of Plant Pathology: Faculty Publications

Brown midrib mutants have been isolated in maize (Zea mays), sorghum (Sorghum bicolor) and pearl millet (Pennisetum glaucum) arising by either spontaneous or chemical mutagenesis. The characteristic brown coloration of the leaf mid veins is associated with reduced lignin content and altered lignin composition, traits useful to improve forage digestibility for livestock. Brown midrib phenotype is correlated with two homologous loci in maize (bm1 and bm3) and sorghum (bmr6 and bmr12), which encode cinnamyl alcohol dehydrogenase (CAD) and a caffeic O-methyl transferase (COMT). These enzymes are involved in the last …

Regulation Of Septum Formation By The Bud3–Rho4 Gtpase Module In Aspergillus Nidulans, Haoyu Si, Daniela Justa-Schuch, Stephan Seiler, Steven D. Harris

Department of Plant Pathology: Faculty Publications

The ability of fungi to generate polarized cells with a variety of shapes likely reflects precise temporal and spatial control over the formation of polarity axes. The bud site selection system of Saccharomyces cerevisiae represents the best-understood example of such a morphogenetic regulatory system. However, the extent to which this system is conserved in the highly polarized filamentous fungi remains unknown. Here, we describe the functional characterization and localization of the Aspergillus nidulans homolog of the axial bud site marker Bud3. Our results show that AnBud3 is not required for polarized hyphal growth per se, but is involved in septum …

An In Vitro Method For The Analysis Of Infection-Related Morphogenesis In Fusarium Graminearum, William R. Rittenour, Steven D. Harris

Department of Plant Pathology: Faculty Publications

Fusarium graminearum is a significant pathogen of many cereal crops. With its genetic tractability, ease of culture, genome sequence availability and economic significance, F. graminearum has become the subject of intensive molecular research. Although molecular tools have been developed to enhance research into virulence determinants of F. graminearum, simple assays for infection-related development are lacking. As such, the objective of this study was to develop an in vitro protocol for the analysis of infection-related morphogenesis in F. graminearum. We demonstrate that two morphologically distinct hyphal structures are produced by F. graminearum during the invasion of detached wheat glumes: subcuticular hyphae …

Science Based Authentication Of Dietary Supplements: Studies On The Chemical Constituents, Analytical Method And Biological Activities Of Scutellaria Spp And Pfaffia Paniculata, Jing Li

Electronic Theses and Dissertations

During the last decade, the use of herbal medicine has expanded globally and gained popularity. With the tremendous expansion in the use of herbal medicine worldwide, safety and efficacy as well as quality control of herbal medicines have become more and more issues of concern for both health authorities and the public. Although herbal medicine has been in use for hundreds to thousands years, very limited science-based data exist to explicit its chemical constituents, pharmacological activities and toxicity. Therefore, lack of scientific evidence for herbal medicine usage elicits the need for systematic studies of herbal medicine, including phytochemical, analytical, and …

Global Assessment Of Nitrogen Deposition Effects On Terrestrial Plant Diversity : A Synthesis, R. Bobbink, K. Hicks, J. Galloway, T. Spranger, R. Alkemade, M. Ashmore, M. Bustamante, S. Cinderby, E. Davidson, F. Dentener, B. Emmett, J. W. Erisman, M. Fenn, Frank S. Gilliam, A. Nordin, L. Pardo, W. Devries

Biological Sciences Faculty Research

Atmospheric nitrogen (N) deposition is a recognized threat to plant diversity in temperate and northern parts of Europe and North America. This paper assesses evidence from field experiments for N deposition effects and thresholds for terrestrial plant diversity protection across a latitudinal range of main categories of ecosystems, from arctic and boreal systems to tropical forests. Current thinking on the mechanisms of N deposition effects on plant diversity, the global distribution of G200 ecoregions, and current and future (2030) estimates of atmospheric N-deposition rates are then used to identify the risks to plant diversity in all major ecosystem types now …

Procedures For Publishing In Non-Usda Media (Outside Publishing)

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

This P&P is an update of a previous version dated March 10, 1998. This P&P outlines revised responsibilities of the ARS author, Research Leader (RL), and other ARS officials. The most salient features of the new P&P are that the manuscript approval authority and associated responsibilities are delegated to the RL. ARS Form 115 (ARS-115) is revised accordingly (see Exhibit 1). Among the essential RL responsibilities are to determine the need and method for manuscript peer review, approve the technical and interpretive content of the manuscript, notify upper management about manuscripts containing prominent issues, obtain proper clearance/approval from upper management …

U.S. Meat Animal Research Center Clay Center, Ne

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Mission

Research Units

U.S. Meat Animal Research Center Animal Health Research Unit

U.S. Meat Animal Research Center Environmental Management Research Unit

U.S. Meat Animal Research Center Genetics & Breeding Research Unit

U.S. Meat Animal Research Center Meat Safety and Quality Research Unit

U.S. Meat Animal Research Center Nutrition Research Unit

U.S. Meat Animal Research Center Reproduction Research Unit

Classical Biological Control For The Protection Of Natural Ecosystems, R.G. Van Driesche, R I. Carruthers, T. Center, M.S. Hoddle, J. Hough-Goldstein, L. Morin, L. Smith, D.L. Wagner, B. Blossey, V. Brancatini, R. Casagrande, C.E. Causton, J.A. Coetzee, J. Cuda, J. Ding, S.V. Fowler, J. H. Frank, R. Fuester, J. A. Goolsby, M. Grodowitz, T.A. Heard, M.P. Hill, J.H. Hoffmann, J. Huber, M. Julien, M.T.K. Kairo, M. Kenis, P. Mason, J. Medal, R. Messing, R. Miller, A. Moore, P. Neuenschwander, R. Newman, H. Norambuena, W.A. Palmer, R. Pemberton, A. Perez-Panduro, P.D. Pratt, M. Rayamajhi, S. Salom, D. Sands, S. Schooler, M. Schwarzländer, A. Sheppard, R. Shaw, P.W. Tipping, R.D. Van Klinken

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Of the 70 cases of classical biological control for the protection of nature found in our review, there were fewer projects against insect targets (21) than against invasive plants (49), in part, because many insect biological control projects were carried out against agricultural pests, while nearly all projects against plants targeted invasive plants in natural ecosystems. Of 21 insect projects, 81% (17) provided benefits to protection of biodiversity, while 48% (10) protected products harvested from natural systems, and 5% (1) preserved ecosystem services, with many projects contributing to more than one goal. In contrast, of the 49 projects against invasive …

Combining A Dispersal Model With Network Theory To Assess Habitat Connectivity, Todd R. Lookingbill, Robert H. Gardner, Joseph R. Ferrari, Cherry E. Keller

Geography and the Environment Faculty Publications

Assessing the potential for threatened species to persist and spread within fragmented landscapes requires the identification of core areas that can sustain resident populations and dispersal corridors that can link these core areas with isolated patches of remnant habitat. We developed a set of GIS tools, simulation methods, and network analysis procedures to assess potential landscape connectivity for the Delmarva fox squirrel (DFS; Sciurus niger cinereus), an endangered species inhabiting forested areas on the Delmarva Peninsula, USA. Information on the DFS’s life history and dispersal characteristics, together with data on the composition and configuration of land cover on the peninsula, …

‘Food For Life’: Looking Beyond The Horizon, Charles A. Francis, John W. Doran

Department of Agronomy and Horticulture: Faculty Publications

Our real challenge appears to be anticipating what the major challenges and constraints will be to food production and distribution a decade or more into the future. This could be called ‘Beyond the Horizon’ thinking. Today there is little disagreement over the massive depletion on a global scale of two essential inputs to agriculture: fossil fuels and fresh water. We also recognize that phosphorus is found in concentrated form in only a few deposits in nature, and that agriculture is rapidly using this limited resource and dispersing it through harvested products and soil loss from fields in forms that make …

Growth And Fitness Components Of Wild × Cultivated Sorghum Bicolor (Poaceae) Hybrids In Nebraska, Lilyrani Sahoo, Jared J. Schmidt, Jeffrey F. Pedersen, Donald Lee, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

• Premise of the study: Gene flow from crops to wild relatives has received considerable attention since the advent of genetically modified crops. Numerous researchers have found wild – crop hybrids to be nearly as fit as their wild parents, which suggests that crop genes may persist in wild populations. Components of the ecological fitness of cultivated sorghum, its wild relative, shattercane, and their hybrids have not been studied.

• Methods: To assess the potential for gene introgression into shattercane, we crossed cultivated sorghum to a single inbred shattercane line to produce F₁ hybrids and measured growth …

Pollination Behaviour Of Linum Aretioides Boiss. (Linaceae) And Its Relations With Air Temperature And Humidity, Özcan Seçmen, Aykut Güvensen, Serdar Gökhan Şenol, Sali̇h Gücel

Turkish Journal of Botany

Linum aretioides Boiss., a local endemic, is distributed only on 2 mountains (İzmir: Bozdağ; Denizli: Babadağ) at the western part of Turkey between 1630 and 2300 m altitudes, above the tree line. The studies were conducted on Mount Bozdağ above the ski complex between 1750 and 2150 m, and on Mount Babadağ between 1630-2300 m both located at subalpine zones. Four 8 × 8 m quadrats on Bozdağ and 5 on Babadağ were used for the experiments. The development of reproductive structures of plants and frequency of insect visits were observed from early May to late June in 2006 and …

2010 Spring Seed Book, Nebraska Crop Improvement Association

Nebraska Crop Improvement Association Seed Guides

FOUNDATION SEED

PLANT VARIETY PROTECTION ACT and HOW IT BENEFITS YOU!

TURFGRASSES

PERENNIAL FORAGE GRASSES

SPRING WHEAT

SPRING BARLEY

OAT VARIETY CHARACTERISTICS - 2010

OATS

MILLET

HYBRID SEED CORN

NEBRASKA SEED QUALITY ASSURANCE® PROGRAM

SOYBEANS BUYERS’ NOTICE

APPROVED SEED CONDITIONERS

CUSTOM CERTIFIED CONDITIONERS

2009 NCIA MEMBERS

A Survey Of The Vascular Flora Of Beaufort County, South Carolina, Daniel Payne

All Theses

Beaufort County has historically been one of the most poorly botanized counties in the state. Geographically, it lies farther from the major research institutions than most other counties and has therefore received little attention from modern botanists. Major waterways, numerous private communities and an oppressive summer climate further complicate botanical research. Beaufort has one of the fastest growing human populations in the state. Natural areas are rapidly being converted into residential and commercial developments. An understanding of the county's flora is necessary to focus conservation efforts to preserve critical habitat and develop management plans for maintaining biodiversity. This project was …

Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 11 2010, Several Authors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Carbon Dynamics In A Phragmites Australis Invaded Riparian Wetland, Steven Walters

School of Natural Resources: Dissertations, Theses, and Student Research

Invasive plant species are widely recognized as a major threat to biodiversity and ecosystem stability. Wetland ecosystems tend to be much more susceptible to invasions because of their location on the landscape where water, nutrients, and the impacts of disturbances accumulate. Invasive plants have the ability to alter ecosystem processes and community/population dynamics. The ability of invasive plants to alter these processes can have profound economic consequences. In the United States, control of invasive wetland species alone costs approximately 155 million dollars annually. The state of Nebraska spends 2 million dollars annually controlling invasive plant species in the Platte River …

Estimation Of Effective Plant Area Index For South Korean Forests Using Lidar System, D. A. Kwak, W. K. Lee, Menas Kafatos, Y. Son, H. K. Cho, S. H. Lee

Mathematics, Physics, and Computer Science Faculty Articles and Research

Light Detection and Ranging (LiDAR) systems can be used to estimate both vertical and horizontal forest structure. Woody components, the leaves of trees and the understory can be described with high precision, using geo-registered 3D-points. Based on this concept, the Effective Plant Area Indices (PAIe) for areas of Korean Pine (Pinus koraiensis), Japanese Larch (Larix leptolepis) and Oak (Quercus spp.) were estimated by calculating the ratio of intercepted and incident LIDAR laser rays for the canopies of the three forest types. Initially, the canopy gap fraction (GLiDAR) was generated by extracting the LiDAR data reflected from the canopy surface, or …

Clonal Propagation Of Dorystoechas Hastata Via Axillary Shoot Proliferation, Bengi̇ Erdağ, Yelda Emek, Serap Aydoğan

Turkish Journal of Botany

A protocol for the in vitro seed germination, seedling development, and axillary shoot propagation of Dorystoechas hastata Boiss. & Heldr. ex Bentham is described. By employing sterilised seeds that were transferred onto in vitro media, the effects of various in vitro media, photoperiods, and temperatures on germination were investigated. At the end of these experiments, a final protocol was determined for the in vitro germination of D. hastata seeds. With this protocol, the highest germination rate was obtained with distilled water supplemented with vitamins and 1 mg L^{-1} of gibberellic acid (GA_{3}), with a 16:8 photoperiod at 24 ± 2 …

Towards Cloning A Tyrosinase Gene From Pitayas, Kurt J. Chamberlain

Honors Program Theses

Betalains, such as those produced by pitayas, are water-soluble nitrogen-containing pigment molecules (Gandia-Herrero et al., 2005). In most families of the Caryophyllales, betalains replace anthocyanins, which are the pigment molecules found in all other families of flowering plants (Strack et al., 2001). Betalains accumulate in the flowers, fruits, and occasionally vegetative tissues of these plants (Strack et al., 2001). Depending on the structure of the molecule, betalains are classified as either betacyanins or betaxanthins. Betacyanins contribute to red-violet coloration, while betaxanthins contribute to the yellow-orange coloration found only in a limited number of plant species (Gandia-Herrero et al., 2005). The …

Increased Weed Diversity, Density And Above-Ground Biomass In Long-Term Organic Crop Rotations, Samuel E. Wortman, John L. Lindquist, Milton J. Haar, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

While weed management is consistently a top priority among farmers, there is also growing concern for the conservation of biodiversity. Maintaining diverse weed communities below bioeconomic thresholds may provide ecosystem services for the crop and the surrounding ecosystem. This study was conducted to determine if weed diversity, density and biomass differ within and among organic and conventional crop rotations. In 2007 and 2008, we sampled weed communities in four long-term crop rotations near Mead, Nebraska, United States using seedbank analyses (elutriation and greenhouse emergence) and above-ground biomass sampling. Two conventional crop rotations consisted of a corn (Zea mays) …

Don't Judge A Book By Its Cover: The Curious Case Of Wild Ginger Pollination, W. John Hayden

Biology Faculty Publications

What pollinates wild ginger? This seems like an easy question. The inconspicuous little flowers are held close to the forest floor, often completely hidden by a dense canopy of ginger leaves above. Flower color is rather drab, dominated by brown and maroon hues. Wind pollination seems completely unlikely and flowers pollinated by bees, butterflies, moths, or hummingbirds are always much more showy and accessible to these flying creatures. Flies, however, given their natural inclination to seek carrion as a food source for their babies (i.e. maggots), are often attracted to brown and maroon flowers. And because their actual quarry, animal …

Studies Of Antioxidant And Angiotensin Converting Enzyme Inhibitory Activity Of Orthosiphon Stamineus (Misai Kucing)., Che Wan Imanina Che Wan Takwa

Student Works (2010-2019)

Abstract NA