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Vegetation Analysis And Soil Characteristics Of Five Common Desert Climbing Plants In Egypt, Monier Abd El-Ghani, Mahmoud Abo El-Kheir, Mahmoud Abdel-Dayem, Mohamed Abd El-Hamid Jan 2011

Vegetation Analysis And Soil Characteristics Of Five Common Desert Climbing Plants In Egypt, Monier Abd El-Ghani, Mahmoud Abo El-Kheir, Mahmoud Abdel-Dayem, Mohamed Abd El-Hamid

Turkish Journal of Botany

This study aimed to characterise Egyptian desert vine flora and compare it with that of deserts in other continents, such as Australia and North America. Specifically, 5 common climbing desert plants (Citrullus colocynthis, Cocculus pendulus, Cucumis prophetarum, Pergularia tomentosa, and Periploca angustifolia) were selected for this study. The floristic composition, vegetation heterogeneity, and chorological affinities of the associated species of the studied climbing plants were quantitatively analysed. In general, Leguminosae, Convolvulaceae, Cucurbitaceae, and Asclepiadaceae are the most species-rich families of the climbing plants in Egypt. The comparison of all desert climbing plants in Egypt to those found in the deserts …


Past And Projected Future Changes In Snowpack And Soil Frost At The Hubbard Brook Experimental Forest, New Hampshire, Usa, John L. Campbell, Scott V. Ollinger, Gerald N. Flerchinger, Haley Wicklein, Katharine Hayhoe, Amey S. Bailey Jan 2011

Past And Projected Future Changes In Snowpack And Soil Frost At The Hubbard Brook Experimental Forest, New Hampshire, Usa, John L. Campbell, Scott V. Ollinger, Gerald N. Flerchinger, Haley Wicklein, Katharine Hayhoe, Amey S. Bailey

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Long-term data from the Hubbard Brook Experimental Forest in New Hampshire show that air temperature has increased by about 1°C over the last half century. The warmer climate has caused significant declines in snow depth, snow water equivalent and snow cover duration. Paradoxically, it has been suggested that warmer air temperatures may result in colder soils and more soil frost, as warming leads to a reduction in snow cover insulating soils during winter. Hubbard Brook has one of the longest records of direct field measurements of soil frost in the United States. Historical records show no long-term trends in maximum …


Physiology And Endocrinology Symposium: Role Of The Oviduct In Maintaining Sustained Fertility In Hens, M. R. Bakst Jan 2011

Physiology And Endocrinology Symposium: Role Of The Oviduct In Maintaining Sustained Fertility In Hens, M. R. Bakst

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

In poultry, sperm transferred by natural mating or AI into the distal end of the vagina immediately begin their ascent to the uterovaginal junction (UVJ) at the anterior end of the vagina. However, due to an intense selection process in the vagina, less than 1% of the sperm transferred actually reach the UVJ. Those sperm that do reach the UVJ enter numerous tubular invaginations of the surface epithelium of the vagina located in the UVJ mucosa, collectively referred to as the sperm-storage tubules (SST). Sperm residing in the SST lumen are capable of surviving up to several weeks while retaining …


26th Hohenheim Consensus Conference, September 11, 2010 Scientific Substantiation Of Health Claims: Evidence-Based Nutrition, Hans Konrad Biesalski, Peter J. Aggett, Robert Anton, Paul S. Bernstein, Jeffrey Blumberg, Robert P. Heaney, Jeya Henry, John M. Nolan, David P. Richardson, Ben Van Ommen, Renger F. Witkamp, Ger T. Rijkers, Iris Zöllner Jan 2011

26th Hohenheim Consensus Conference, September 11, 2010 Scientific Substantiation Of Health Claims: Evidence-Based Nutrition, Hans Konrad Biesalski, Peter J. Aggett, Robert Anton, Paul S. Bernstein, Jeffrey Blumberg, Robert P. Heaney, Jeya Henry, John M. Nolan, David P. Richardson, Ben Van Ommen, Renger F. Witkamp, Ger T. Rijkers, Iris Zöllner

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Objective: The objective was to define the term evidence based nutrition on the basis of expert discussions and scientific evidence.

Methods and procedures: The method used is the established Hohenheim Consensus Conference. The term “Hohenheim Consensus Conference” defines conferences dealing with nutrition-related topics. The major aim of the conference is to review the state of the art of a given topic with experts from different areas (basic science, clinicians, epidemiologists, etc.). Based on eight to 12 questions, the experts discuss short answers and try to come to a consensus. A scientifically based text is formulated that justifies the …


Response Of Tribolium Castaneum And Tribolium Confusum Adults To Vertical Black Shapes And Its Potential To Improve Trap Capture, Altair A. Semeao, James F. Campbell, R. Jeff Whitworth, Phillip E. Sloderbeck Jan 2011

Response Of Tribolium Castaneum And Tribolium Confusum Adults To Vertical Black Shapes And Its Potential To Improve Trap Capture, Altair A. Semeao, James F. Campbell, R. Jeff Whitworth, Phillip E. Sloderbeck

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Tribolium castaneum and Tribolium confusum can be monitored in food processing facilities using traps baited with pheromones and kairomones, but beetle response to traps might be enhanced by adding visual cues. Against a white background, T. castaneum adults were more likely to visit black pillars than white pillars when presented with a choice (e.g., 73% of beetles visited black and 17% visiting white pillar), and visits to black pillars increased with pillar height. When tested against a black background, beetles did not show a significant preference for either color pillar regardless of height. When comparing beetle’s captures in pheromone/kairomone baited …


Effect Of Maternal Restraint Stress During Gestation On Temporal Lipopolysaccharide-Induced Neuroendocrine And Immune Responses Of Progeny, C.T. Collier, P.N. Williams, J.A. Carroll, T.H. Welsh Jr, J.C. Laurenz Jan 2011

Effect Of Maternal Restraint Stress During Gestation On Temporal Lipopolysaccharide-Induced Neuroendocrine And Immune Responses Of Progeny, C.T. Collier, P.N. Williams, J.A. Carroll, T.H. Welsh Jr, J.C. Laurenz

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The impact of gestational dam restraint stress on progeny immune and neuroendocrine temporal hormone responses to lipopolysaccharide (LPS) challenge was assessed. Maternal stress (5-min snout snare restraint stress during days 84 to 112 of gestation) increased (P < 0.05) the magnitude of tumor necrosis factor (TNF)-α, interleukin-6, epinephrine (E), norepinephrine, and serum amyloid A (SAA) production following LPS infusion in the offspring. Moreover, these effects appear to be dependent on gender for TNF-α, E, and cortisol production. However, maternal stress did not affect (P < 0.05) the normalization of proinflammatory cytokines or neuroendocrine hormones produced following LPS. Collectively, these results indicate that maternal stress impacts aspects of the proinflammatory cytokine and stress hormone response in their progeny following LPS dosing of the offspring. This response is potentially responsible in part for the resultant changes to SAA production. Because several of the changes observed here are dependent on pig gender, these results are also the first evidence that inherent epigenetic factors coupled with maternal stress impact the cumulative response to stress and LPS in young pigs.


Influence Of Ensiling Time And Inoculation On Alteration Of The Starch-Protein Matrix In High-Moisture Corn, P. C. Hoffman, N. M. Esser, R. D. Shaver, W. K. Coblentz, M. P. Scott, A. L. Bodnar, R. J. Schmidt, R. C. Charley Jan 2011

Influence Of Ensiling Time And Inoculation On Alteration Of The Starch-Protein Matrix In High-Moisture Corn, P. C. Hoffman, N. M. Esser, R. D. Shaver, W. K. Coblentz, M. P. Scott, A. L. Bodnar, R. J. Schmidt, R. C. Charley

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

The fates of hydrophobic zein proteins, which encapsulate corn starch to create vitreous endosperm, have not been investigated in high-moisture corn (HMC). To assess influences of ensiling time and inoculation on zein proteins in HMC, quadruplicate samples of 2 random corn hybrids (A and B), containing 25.7 and 29.3% moisture, were ground, inoculated with (I) or without 600,000 cfu/g of Lactobacillus buchneri 40788 (Lallemand Animal Nutrition, Milwaukee, WI), and ensiled for 0, 15, 30, 60, 120, and 240 d. Nutrient composition [crude protein (CP), starch, acid detergent fiber, and neutral detergent fiber], fermentation (pH, lactate, and acetate), and protein degradation …


Changes In Mineral Concentrations And Phosphorus Profile During Dry-Grind Processing Of Corn Into Ethanol, Keshun Liu, Jianchun Han Jan 2011

Changes In Mineral Concentrations And Phosphorus Profile During Dry-Grind Processing Of Corn Into Ethanol, Keshun Liu, Jianchun Han

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

For determining variation in mineral composition and phosphorus (P) profile among streams of dry-grind ethanol production, samples of ground corn, intermediate streams, and distillers dried grains with solubles (DDGS) were obtained from three commercial plants. Most attributes (dry matter concentrations) increased significantly from corn to cooked slurry but fermentation caused most significant increase in all attributes. During centrifugation, more minerals went into thin stillage than wet grains, making minerals most concentrated in the former. Mineral increase in DDGS over corn was about 3 fold, except for Na, S, Ca, and Fe. The first three had much higher fold of increase, …


Evaluation Of Two Mutants Of Mycobacterium Avium Subsp. Paratuberculosis As Candidates For A Live Attenuated Vaccine For Johne’S Disease, Kun Taek Park, Andrew J. Allen, John P. Bannantine, Keun Seok Seo, Mary J. Hamilton, Gaber S. Abdellrazeq, Heba M. Rihan, Amanda Grimm, William C. Davis Jan 2011

Evaluation Of Two Mutants Of Mycobacterium Avium Subsp. Paratuberculosis As Candidates For A Live Attenuated Vaccine For Johne’S Disease, Kun Taek Park, Andrew J. Allen, John P. Bannantine, Keun Seok Seo, Mary J. Hamilton, Gaber S. Abdellrazeq, Heba M. Rihan, Amanda Grimm, William C. Davis

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Control of Johne’s disease, caused by Mycobacterium avium subsp. paratuberculosis, has been difficult because of a lack of an effective vaccine. To address this problem we used targeted gene disruption to develop candidate mutants with impaired capacity to survive ex vivo and in vivo to test as a vaccine. We selected relA and pknG, genes known to be important virulence factors in Mycobacterium tuberculosis and Mycobacterium bovis, for initial studies. Deletion mutants were made in a wild type Map (K10) and its recombinant strain expressing the green fluorescent protein (K10-GFP). Comparison of survival in an ex vivo …


A Phylogenetic Assessment Of Breeding Systems And Floral Morphology Of North American Ipomoea (Convolvulaceae), J. Andrew Mcdonald, Joshua R. Mcdill, Debra R. Hansen, Beryl B. Simpson Jan 2011

A Phylogenetic Assessment Of Breeding Systems And Floral Morphology Of North American Ipomoea (Convolvulaceae), J. Andrew Mcdonald, Joshua R. Mcdill, Debra R. Hansen, Beryl B. Simpson

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A phylogenetic investigation of 68 species and two varieties of tropical and temperate North American Ipomoea (Convolvulaceae) using sequence data from the internal transcribed spacer region (ITS) with parsimony and Bayesian analyses revealed multiple origins of autogamy. By assessing breeding systems and floral morphological characters in the context of this phylogeny, we estimate 16 independent origins of autogamy and 4 subsequent reversions to xenogamy. Transitions to autogamy are associated with reduced pollen-ovule ratios, decreased anther-stigma distance, and small flower size. Although the relationship between floral traits and breeding systems has been described in previous studies, this is the first investigation …


Proteomic Changes During Boron Tolerance In Barley(Hordeum Vulgare) And The Role Of Vacuolar Proton-Translocating Atpase Subunit E, Ahmet Emi̇n Ati̇k, Gönensi̇n Ozan Bozdağ, Ersi̇n Akinci, Alaatti̇n Kaya, Ahmet Koç, Talat Yalçin, Hüseyi̇n Çağlar Karakaya Jan 2011

Proteomic Changes During Boron Tolerance In Barley(Hordeum Vulgare) And The Role Of Vacuolar Proton-Translocating Atpase Subunit E, Ahmet Emi̇n Ati̇k, Gönensi̇n Ozan Bozdağ, Ersi̇n Akinci, Alaatti̇n Kaya, Ahmet Koç, Talat Yalçin, Hüseyi̇n Çağlar Karakaya

Turkish Journal of Botany

Boron is an essential micronutrient for plants and animals; however, it can be toxic when present at high concentrations. The purpose of this study was to understand the mechanisms of boron tolerance in the Turkish barley (Hordeum vulgare) Anadolu cultivar. For this purpose, 2-dimensional electrophoresis (2-DE) was used to screen differentially expressed proteins for both control and boron-stressed Anadolu barley genotypes. Seven proteins were revealed by 2-DE: 1) ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCo large chain), 2) TLP5, a thaumatin-like protein, 3) PR5, a basic pathogenesis-related protein, 4) a RNase S-like protein, 5) a PSI type III chlorophyll a/b-binding protein, 6) a …


Ultrastructural Changes In The Root Tip And Leaf Cells Of Lens Culinaris Treated With Fluazifop-P-Butyl, Özlem Aksoy, Feruzan Dane Jan 2011

Ultrastructural Changes In The Root Tip And Leaf Cells Of Lens Culinaris Treated With Fluazifop-P-Butyl, Özlem Aksoy, Feruzan Dane

Turkish Journal of Botany

In this study, ultrastructural changes in root tip cells and leaf cells of lentil plants treated with 4 different concentrations (0.25%, 0.5%, 1%, and 1.5%) of the herbicide fluazifop-p-butyl (FPB) were determined. The experiments were performed with light and transmission electron microscopy (TEM) and the chlorophyll content of the leaves was determined using spectrophotometric methods. The effect of FPB included alterations in cell walls, nuclei, plastids, cuticle, and epidermis. The obtained results indicate that the herbicide FPB has the ability to cause different kinds of abnormalities in various cell organelles, especially the cell walls in root tips. The effect of …


The Classification And Assessment Of Vegetation For Monitoring Coastal Sand Dune Succession: The Case Of Tuzla In Adana, Turkey, Hali̇l Çakan, Kemal Tulühan Yilmaz, Hakan Alphan, Yüksel Ünlükaplan Jan 2011

The Classification And Assessment Of Vegetation For Monitoring Coastal Sand Dune Succession: The Case Of Tuzla In Adana, Turkey, Hali̇l Çakan, Kemal Tulühan Yilmaz, Hakan Alphan, Yüksel Ünlükaplan

Turkish Journal of Botany

This study aimed to provide an assessment of coastal sand dune vegetation through a number of analyses meant to provide a better understanding of the structure of plant communities and the successional stages of coastal sand dunes in a human-induced coastal landscape, the Seyhan Delta in southern Turkey. Therefore, as a baseline data inventory for monitoring, succession and the community-based classification of sand dune vegetation and human impacts were the major concerns of this study. The zonation of coastal sand dune vegetation was also determined within this scope, providing a contemporary assessment of different successional stages. A total of 96 …


Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris Jan 2011

Control Of Glucosylceramide Production And Morphogenesis By The Bar1 Ceramide Synthase In Fusarium Graminearum, William B. Rittenour, Ming Chen, Edgar B. Cahoon, Steven D. Harris

Department of Plant Pathology: Faculty Publications

The contribution of plasma membrane proteins to the virulence of plant pathogenic fungi is poorly understood. Accordingly, the objective of this study was to characterize the acyl-CoA dependent ceramide synthase Bar1 (previously implicated in plasma membrane organization) in the wheat pathogen Fusarium graminearum. The role of Bar1 in mediating cell membrane organization was confirmed as DBAR1 mutants failed to display a distinct sterol-rich domain at the hyphal tip. The DBAR1 mutants were non-pathogenic when inoculated onto wheat heads, and their in vitro growth also was severely perturbed. DBAR1 mutants were incapable of producing perithecia (sexual fruiting structures) and only produced …


Antibody Recognition Of Porcine Circovirus Type 2 Capsid Protein Epitopes After Vaccination, Infection, And Disease, Benjamin R. Trible, Maureen Kerrigan, Nicholas Crossland, Megan Potter, Kay Faaberg, Richard Hesse, Raymond R. R. Rowland Jan 2011

Antibody Recognition Of Porcine Circovirus Type 2 Capsid Protein Epitopes After Vaccination, Infection, And Disease, Benjamin R. Trible, Maureen Kerrigan, Nicholas Crossland, Megan Potter, Kay Faaberg, Richard Hesse, Raymond R. R. Rowland

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Open reading frame 2 (ORF2) of porcine circovirus type 2 (PCV2) codes for the 233-amino-acid capsid protein (CP). Baculovirus-based vaccines that express only ORF2 are protective against clinical disease following experimental challenge or natural infection. The goal of this study was to identify regions in CP preferentially recognized by sera from experimentally infected and vaccinated pigs and to compare these responses to those of pigs diagnosed with porcine circovirus-associated disease (PCVAD), including porcine multisystemic wasting syndrome (PMWS) and porcine dermatitis and nephropathy syndrome (PDNS). The approach was to react porcine sera with CP polypeptide fragments followed by finer mapping studies …


Effect Of Nitrogen Fertilizer Rate And Harvest Season On Forage Yield, Quality, And Macronutrient Concentrations In Midland Bermuda Grass, Maru K. Kering, John A. Guretzky, Eddie Funderburg, Jagadeesh Mosali Jan 2011

Effect Of Nitrogen Fertilizer Rate And Harvest Season On Forage Yield, Quality, And Macronutrient Concentrations In Midland Bermuda Grass, Maru K. Kering, John A. Guretzky, Eddie Funderburg, Jagadeesh Mosali

Department of Agronomy and Horticulture: Faculty Publications

Bermuda grass [Cynodon dactylon (L.) Pers.] is a major forage for grazing and hay production in the southern United States. The objectives of this study were to determine effects of nitrogen (N) fertilization rate (0, 112, 224, 336, and 448 kg ha−1), split spring and summer applications of N at the 224 and 448 kg ha−1 rates, and harvest periods (spring and summer) on forage yield, crude protein (CP), acid detergent fiber (ADF), neutral detergent fiber (NDF), total digestible nutrients (TDN), and concentrations of phosphorus (P), potassium (K), magnesium (Mg), and calcium (Ca) in Midland Bermuda …


Switchgrass For Forage And Bioenergy: Harvest And Nitrogen Rate Effects On Biomass Yields And Nutrient Composition, John A. Guretzky, Jon T. Biermacher, Billy Cook, Maru K. Kering, Jagadeesh Mosali Jan 2011

Switchgrass For Forage And Bioenergy: Harvest And Nitrogen Rate Effects On Biomass Yields And Nutrient Composition, John A. Guretzky, Jon T. Biermacher, Billy Cook, Maru K. Kering, Jagadeesh Mosali

Department of Agronomy and Horticulture: Faculty Publications

Switchgrass (Panicum virgatum L.) may have value as forage and a bioenergy feedstock. Our objective was to evaluate how harvest system and N fertilizer rates affected biomass yield and nutrient composition of young stands of switchgrass (cv. Alamo) in the southern Great Plains, USA. Nitrogen fertilization increased biomass yields from 10.4, 10.8, and 12.2 Mg ha−1 at 0 kg N ha−1 to 13.7, 14.6, and 21.0 Mg ha−1 at 225 kg N ha−1 when harvested after seed set (October), after frost (December), and twice per year after boot stage (July) and frost, respectively. Nutrient concentrations …


Learning Gains And Response To Digital Lessons On Soil Genesis And Development, Martha Mamo, James A. Ippolito, Timothy A. Kettler, Ronald Reuter, Dennis L. Mccallister, Patricia Morner, Dann E. Husmann, Erin E. Blankenship Jan 2011

Learning Gains And Response To Digital Lessons On Soil Genesis And Development, Martha Mamo, James A. Ippolito, Timothy A. Kettler, Ronald Reuter, Dennis L. Mccallister, Patricia Morner, Dann E. Husmann, Erin E. Blankenship

Department of Agronomy and Horticulture: Faculty Publications

Evolving computer technology is offering opportunities for new online approaches in teaching methods and delivery. Well-designed web-based (online) lessons should reinforce the critical need of the soil science discipline in today's food, energy, and environmental issues, as well as meet the needs of the diverse clientele with interest in agricultural and/ or environmental disciplines. The objectives of the project were to: (1) develop web-based lessons in soil genesis and development and (2) evaluate context-based case studies or application lessons (agronomic, environmental, and ecological situations) to teach soil genesis and development. Six principles lessons, along with three applications lessons, were developed …


Registration Of ‘Nh03614 Cl’ Wheat, P. Stephen Baenziger, Robert A. Graybosch, Lenis Alton Nelson, Teshome H. Regassa, Robert N. Klein, D. D. Baltensperger, Dipak K. Santra, A. M. H. Ibrahim, W. Berzonsky, J. M. Krall, Lei Xu, Stephen N. Wegulo, M. L. Bernards, Y. Jin, J. Kolmer, J. H. Hatchett, M.-S. Chen, G. Bai Jan 2011

Registration Of ‘Nh03614 Cl’ Wheat, P. Stephen Baenziger, Robert A. Graybosch, Lenis Alton Nelson, Teshome H. Regassa, Robert N. Klein, D. D. Baltensperger, Dipak K. Santra, A. M. H. Ibrahim, W. Berzonsky, J. M. Krall, Lei Xu, Stephen N. Wegulo, M. L. Bernards, Y. Jin, J. Kolmer, J. H. Hatchett, M.-S. Chen, G. Bai

Department of Agronomy and Horticulture: Faculty Publications

‘NH03614 CL’ (Reg. No. CV-1051, PI 653833) hard red winter wheat (Triticum aestivum L.) was developed cooperatively by the Nebraska Agricultural Experiment Station and the USDA-ARS and released in 2008 by the developing institutions and the South Dakota Agricultural Experiment Station and the Wyoming Agricultural Experiment Station. In addition to researchers at the releasing institutions, USDA-ARS researchers at Manhattan, KS and St. Paul, MN participated in the development of NH03614 CL. NH03614 CL was selected from the cross ‘Wesley’ sib//‘Millennium’ sib/‘Above’ sib that was made in the spring of 1997 to develop new herbicide-tolerant cultivars. NH03614 CL was selected …


Biological Suppression Of Velvetleaf (Abutilon Theophrasti ) In An Eastern Nebraska Soil, Jane Okalebo, Gary Y. Yuen, Rhae A. Drijber, Erin E. Blankenship, Cafer Eken, John L. Lindquist Jan 2011

Biological Suppression Of Velvetleaf (Abutilon Theophrasti ) In An Eastern Nebraska Soil, Jane Okalebo, Gary Y. Yuen, Rhae A. Drijber, Erin E. Blankenship, Cafer Eken, John L. Lindquist

Department of Agronomy and Horticulture: Faculty Publications

Weed-suppressive soils contain naturally occurring microorganisms that suppress a weed by inhibiting its growth, development, and reproductive potential. Increased knowledge of microbe–weed interactions in such soils could lead to the identification of management practices that create or enhance soil suppressiveness to weeds. Velvetleaf death and growth suppression was observed in a research field (fieldA) that was planted with high populations of velvetleaf, which may have developed via microbial mediated plant–soil feedback. Greenhouse studies were conducted with soil collected from fieldA (soilA) to determine if it was biologically suppressive to velvetleaf. In one study, mortality of velvetleaf …


Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved In Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, Gautam Sarath Jan 2011

Switchgrass Contains Two Cinnamyl Alcohol Dehydrogenases Involved In Lignin Formation, Aaron J. Saathoff, Christian M. Tobias, Scott E. Sattler, Eric J. Haas, Paul Twigg, Gautam Sarath

Department of Agronomy and Horticulture: Faculty Publications

Lignin content of switchgrass (Panicum virgatum L.), a bioenergy species, is a critical determinant of biomass quality since it can negatively impact conversion of biomass into liquid fuels via biochemical platforms. Cinnamyl alcohol dehydrogenase (CAD) is a key enzyme in lignin biosynthesis. Here, we have shown that cv. Kanlow switchgrass contains at least two closely related CAD genes (PviCAD1 and PviCAD2) that code for proteins containing highly conserved domains and residues that identify them as bona fide CADs. Both recombinant proteins displayed substrate kinetics consistent with their presumed role in cell wall lignification. Proteomic and immunoblotting detected …


The Composition And Origins Of Genomic Variation Among Individuals Of The Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, Robert M. Stupar Jan 2011

The Composition And Origins Of Genomic Variation Among Individuals Of The Soybean Reference Cultivar Williams 82, William J. Haun, D. L. Hyten, Wayne W. Xu, Daniel J. Gerhardt, Thomas J. Albert, Todd Richmond, Jeffrey A. Jeddeloh, Gaofeng Jia, Nathan M. Springer, Carroll P. Vance, Robert M. Stupar

Department of Agronomy and Horticulture: Faculty Publications

Soybean (Glycine max) is a self-pollinating species that has relatively low nucleotide polymorphism rates compared with other crop species. Despite the low rate of nucleotide polymorphisms, a wide range of heritable phenotypic variation exists. There is even evidence for heritable phenotypic variation among individuals within some cultivars. Williams 82, the soybean cultivar used to produce the reference genome sequence, was derived from backcrossing a Phytophthora root rot resistance locus from the donor parent Kingwa into the recurrent parent Williams. To explore the genetic basis of intracultivar variation, we investigated the nucleotide, structural, and gene content variation of different …


The Arabidopsis Trithorax-Like Factor Atx1 Functions In Dehydration Stress Responses Via Aba-Dependent And Aba-Independent Pathways, Yong Ding, Zoya Avramova, Michael Fromm Jan 2011

The Arabidopsis Trithorax-Like Factor Atx1 Functions In Dehydration Stress Responses Via Aba-Dependent And Aba-Independent Pathways, Yong Ding, Zoya Avramova, Michael Fromm

School of Biological Sciences: Faculty Publications

Emerging evidence suggests that the molecular mechanisms driving the responses of plants to environmental stresses are associated with specific chromatin modifications. Here, we demonstrate that the Arabidopsis trithorax-like factor ATX1, which trimethylates histone H3 at lysine 4 (H3K4me3), is involved in dehydration stress signaling in both abscisic acid (ABA)-dependent and ABA-independent pathways. The loss of function of ATX1 results in decreased germination rates, larger stomatal apertures, more rapid transpiration and decreased tolerance to dehydration stress in atx1 plants. This deficiency is caused in part by reduced ABA biosynthesis in atx1 plants resulting from decreased transcript levels from NCED3, which …


Engineering A Future For Amphibians Under Climate Change, Luke P. Shoo, Deanna H. Olson, Sarah K. Mcmenamin, Kris A. Murray, Monique Van Sluys, Maureen A. Donnelly, Danial Stratford, Juhani Terhivuo, Andres Merino-Viteri, Sarah M. Herbert, Phillip J. Bishop, Paul Stephen Corn, Liz Dovey, Richard A. Griffiths, Katrin Lowe, Michael Mahony, Hamish Mccallum, Jonathan D. Shuker, Clay Simpkins, Lee F. Skerrat, Stephen E. Williams, Jean-Marc Hero Jan 2011

Engineering A Future For Amphibians Under Climate Change, Luke P. Shoo, Deanna H. Olson, Sarah K. Mcmenamin, Kris A. Murray, Monique Van Sluys, Maureen A. Donnelly, Danial Stratford, Juhani Terhivuo, Andres Merino-Viteri, Sarah M. Herbert, Phillip J. Bishop, Paul Stephen Corn, Liz Dovey, Richard A. Griffiths, Katrin Lowe, Michael Mahony, Hamish Mccallum, Jonathan D. Shuker, Clay Simpkins, Lee F. Skerrat, Stephen E. Williams, Jean-Marc Hero

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

1. Altered global climates in the 21st century pose serious threats for biological systems and practical actions are needed to mount a response for species at risk.

2. We identify management actions from across the world and from diverse disciplines that are applicable to minimizing loss of amphibian biodiversity under climate change. Actions were grouped under three thematic areas of intervention: (i) installation of microclimate and microhabitat refuges; (ii) enhancement and restoration of breeding sites; and (iii) manipulation of hydroperiod or water levels at breeding sites.

3. Synthesis and applications. There are currently few meaningful management actions that will …


A Habitat Overlap Analysis Derived From Maxent For Tamarisk And The South-Western Willow Flycatcher, Patricia York, Paul Evangelista, Sunil Kumar, James Graham, Curtis Flather, Thomas Stohlgren Jan 2011

A Habitat Overlap Analysis Derived From Maxent For Tamarisk And The South-Western Willow Flycatcher, Patricia York, Paul Evangelista, Sunil Kumar, James Graham, Curtis Flather, Thomas Stohlgren

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Biologic control of the introduced and invasive, woody plant tamarisk (Tamarix spp, saltcedar) in south-western states is controversial because it affects habitat of the federally endangered South-western Willow Flycatcher (Empidonax traillii extimus). These songbirds sometimes nest in tamarisk where floodplain-level invasion replaces native habitats. Biologic control, with the saltcedar leaf beetle (Diorhabda elongate), began along the Virgin River, Utah, in 2006, enhancing the need for comprehensive understanding of the tamarisk-flycatcher relationship. We used maximum entropy (Maxent) modeling to separately quantify the current extent of dense tamarisk habitat (>50% cover) and the potential extent of …


Carrying Capacity For Species Richness As A Context For Conservation: A Case Study Of North American Breeding Birds, Andrew J. Hansen, Linda Bowers Phillips, Curtis H. Flather, Jim Robinson-Cox Jan 2011

Carrying Capacity For Species Richness As A Context For Conservation: A Case Study Of North American Breeding Birds, Andrew J. Hansen, Linda Bowers Phillips, Curtis H. Flather, Jim Robinson-Cox

United States Department of Agriculture, Forest Service / University of Nebraska-Lincoln: Faculty Publications

Aim To demonstrate that the concept of carrying capacity for species richness (SK) is highly relevant to the conservation of biodiversity, and to estimate the spatial pattern of SK for native landbirds as a basis for conservation planning.

Location North America.

Methods We evaluated the leading hypotheses on biophysical factors affecting species richness for Breeding Bird Survey routes from areas with little influence of human activities.We then derived a best model based on information theory, and used this model to extrapolate SK across North America based on the biophysical predictor variables. The predictor variables included the …


The Evolution Of Sexual Reproduction In Cuscuta (Convolvulaceae), Michael Wright Jan 2011

The Evolution Of Sexual Reproduction In Cuscuta (Convolvulaceae), Michael Wright

Theses and Dissertations (Comprehensive)

Cuscuta (Convolvulaceae), the dodders, is a genus of ca. 200 species of obligate stem parasites distributed across a great diversity of habitats worldwide. The existence of a handful of species that are dangerous crop weeds has led researchers to historically focus on their growth and control. Consequently, there is a dearth of information about their biodiversity, ecology, and in particular their reproductive biology. This thesis surveys aspects of sex allocation, floral evolution, floral rewards for pollinators, and mechanisms of reproductive assurance across the genus. I demonstrate that Cuscuta has evolved a broad spectrum of breeding systems, from obligate selfing to …


Functional Characterization Of Wd Repeat Proteins, Atcstf50 And Atfy In Cleavage And Polyadenylation, Lavanya Dampanaboina Jan 2011

Functional Characterization Of Wd Repeat Proteins, Atcstf50 And Atfy In Cleavage And Polyadenylation, Lavanya Dampanaboina

Theses and Dissertations--Plant and Soil Sciences

Polyadenylation is an essential post-transcriptional modification resulting in a mature mRNA in eukaryotes. Three cis-elements the Far Upstream Element (FUE), Near Upstream Element (NUE), and Cleavage Site (CS) - guide the process of cleavage and polyadenylation with the help of multi-subunit protein complexes cleavage and polyadenylation specificity factor (CPSF), cleavage stimulation factor (CstF) along with cleavage factors and poly(A) polymerase. Protein-protein interactions play an important role in the cleavage and polyadenylation process. WD repeat proteins play an important role in protein-protein interactions and have diverse functions in plant system. In the present study WD repeat proteins AtCstF50 and AtFY were …


Forage Nutritional Quality Evaluation Of Bahiagrass Selections During Autumn In Florida, Robert Myer, Ann Blount, Samuel Coleman, Jeffery Carter Jan 2011

Forage Nutritional Quality Evaluation Of Bahiagrass Selections During Autumn In Florida, Robert Myer, Ann Blount, Samuel Coleman, Jeffery Carter

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

Bahiagrass (Paspalum notatum Flugge) is the major pasture forage in the southern Gulf Coast, USA. A bahiagrass selection breeding program has been ongoing since 1960 at the Coastal Plain Experiment Station at Tifton, Georgia, USA, to increase forage yield in Pensacola (P. notatum var. sanese) bahiagrass. However, the impact of selecting for forage yield on forage nutritional quality is unknown. Forage quality was evaluated on four Pensacola derived selection cycles (C) of bahiagrass [C0 (Pensacola), C4, C9 (Tifton 9), and C23]. A total of 175 plants per cycle were grown. Forage from individual 1-year-old plants was harvested by …


Pathogenicity And Molecular Characterization Of Emerging Porcine Reproductive And Respiratory Syndrome Virus In Vietnam In 2007, S. Metwally, F. Mohamed, K. Faaberg, T. Burrage, M. Prarat, K. Moran, A. Bracht, G. Mayr, M. Berninger, L. Koster, T. L. To, V. L. Nguyen, M. Reising, J. Landgraf, L. Cox, J. Lubroth, C. Carrillo Jan 2011

Pathogenicity And Molecular Characterization Of Emerging Porcine Reproductive And Respiratory Syndrome Virus In Vietnam In 2007, S. Metwally, F. Mohamed, K. Faaberg, T. Burrage, M. Prarat, K. Moran, A. Bracht, G. Mayr, M. Berninger, L. Koster, T. L. To, V. L. Nguyen, M. Reising, J. Landgraf, L. Cox, J. Lubroth, C. Carrillo

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

In 2007, Vietnam experienced swine disease outbreaks causing clinical signs similar to the ‘porcine high fever disease’ that occurred in China during 2006. Analysis of diagnostic samples from the disease outbreaks in Vietnam identified porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus type 2 (PCV-2). Additionally, Escherichia coli and Streptococcus equi subspecies zooepidemicus were cultured from lung and spleen, and Streptococcus suis from one spleen sample. Genetic characterization of the Vietnamese PRRSV isolates revealed that this virus belongs to the North American genotype (type 2) with a high nucleotide identity to the recently reported Chinese strains. Amino acid …