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Orm Expression Alters Sphingolipid Homeostasis And Differentially Affects Ceramide Synthase Activity, Athen N. Kimberlin, Gongshe Han, Kyle D. Luttgeharm, Ming Chen, Rebecca E. Cahoon, Julie M. Stone, Jennifer E. Markham, Teresa M. Dunn, Edgar B. Cahoon Oct 2016

Orm Expression Alters Sphingolipid Homeostasis And Differentially Affects Ceramide Synthase Activity, Athen N. Kimberlin, Gongshe Han, Kyle D. Luttgeharm, Ming Chen, Rebecca E. Cahoon, Julie M. Stone, Jennifer E. Markham, Teresa M. Dunn, Edgar B. Cahoon

Center for Plant Science Innovation: Faculty Publications

Sphingolipid synthesis is tightly regulated in eukaryotes. This regulation in plants ensures sufficient sphingolipids to support growth while limiting the accumulation of sphingolipid metabolites that induce programmed cell death. Serine palmitoyltransferase (SPT) catalyzes the first step in sphingolipid biosynthesis and is considered the primary sphingolipid homeostatic regulatory point. In this report, Arabidopsis (Arabidopsis thaliana) putative SPT regulatory proteins, orosomucoidlike proteins AtORM1 and AtORM2, were found to interact physically with Arabidopsis SPT and to suppress SPT activity when coexpressed with Arabidopsis SPT subunits long-chain base1 (LCB1) and LCB2 and the small subunit of SPT in a yeast ( …


Plastid Osmotic Stress Influences Cell Differentiation At The Plant Shoot Apex, Margaret E. Wilson, Matthew Mixdorf, R Howard Berg, Elizabeth S. Haswell Sep 2016

Plastid Osmotic Stress Influences Cell Differentiation At The Plant Shoot Apex, Margaret E. Wilson, Matthew Mixdorf, R Howard Berg, Elizabeth S. Haswell

Biology Faculty Research

The balance between proliferation and differentiation in the plant shoot apical meristem is controlled by regulatory loops involving the phytohormone cytokinin and stem cell identity genes. Concurrently, cellular differentiation in the developing shoot is coordinated with the environmental and developmental status of plastids within those cells. Here, we employ an Arabidopsis thaliana mutant exhibiting constitutive plastid osmotic stress to investigate the molecular and genetic pathways connecting plastid osmotic stress with cell differentiation at the shoot apex. msl2 msl3 mutants exhibit dramatically enlarged and deformed plastids in the shoot apical meristem, and develop a mass of callus tissue at the shoot …


We All Should Strive To Be The Palm In The Storm, Carolyn Massiah Sep 2016

We All Should Strive To Be The Palm In The Storm, Carolyn Massiah

UCF Forum

Hurricane season is beginning to hit its peak activity. Multiple storms have been brewing in the Atlantic the past couple weeks.


Corn Yield Loss Estimates Due To Diseases In The United States And Ontario, Canada From 2012 To 2015, Daren S. Mueller, Kiersten A. Wise, Adam J. Sisson, Tom W. Allen, Gary C. Bergstrom, D. Bruce Bosley, Carl A. Bradley, Kirk D. Broders, Emmanuel Byamukama, Martin I. Chilvers, Alyssa Collins, Travis R. Faske, Andrew J. Friskop, Ron W. Heiniger, Clayton A. Hollier, David C. Hooker, Tom Isakeit, Tamra A. Jackson-Ziems, Douglas J. Jardine, Heather M. Kelly, Kasia Kinzer, Steve R. Koenning, Dean K. Malvick, Marcia Mcmullen, Ron F. Meyer, Pierce A. Paul, Alison E. Robertson, Gregory W. Roth, Damon L. Smith, Connie A. Tande, Albert U. Tenuta, Paul Vincelli, Fred Warner Sep 2016

Corn Yield Loss Estimates Due To Diseases In The United States And Ontario, Canada From 2012 To 2015, Daren S. Mueller, Kiersten A. Wise, Adam J. Sisson, Tom W. Allen, Gary C. Bergstrom, D. Bruce Bosley, Carl A. Bradley, Kirk D. Broders, Emmanuel Byamukama, Martin I. Chilvers, Alyssa Collins, Travis R. Faske, Andrew J. Friskop, Ron W. Heiniger, Clayton A. Hollier, David C. Hooker, Tom Isakeit, Tamra A. Jackson-Ziems, Douglas J. Jardine, Heather M. Kelly, Kasia Kinzer, Steve R. Koenning, Dean K. Malvick, Marcia Mcmullen, Ron F. Meyer, Pierce A. Paul, Alison E. Robertson, Gregory W. Roth, Damon L. Smith, Connie A. Tande, Albert U. Tenuta, Paul Vincelli, Fred Warner

Department of Plant Pathology: Faculty Publications

Annual decreases in corn yield caused by diseases were estimated by surveying members of the Corn Disease Working Group in 22 corn-producing states in the United States and in Ontario, Canada, from 2012 through 2015. Estimated loss from each disease varied greatly by state and year. In general, foliar diseases such as northern corn leaf blight, gray leaf spot, and Goss’s wilt commonly caused the largest estimated yield loss in the northern United States and Ontario during nondrought years. Fusarium stalk rot and plant-parasitic nematodes caused the most estimated loss in the southern-most United States. The estimated mean economic loss …


Deidamia Inscriptum (Lettered Sphinx Moth) Caterpillars Feeding On Oxydendrum Arboreum (Sourwood) And Their Predation By Black Bears In Northeast Tennessee, Foster Levy, David L. Wagner, Elaine S. Walker Sep 2016

Deidamia Inscriptum (Lettered Sphinx Moth) Caterpillars Feeding On Oxydendrum Arboreum (Sourwood) And Their Predation By Black Bears In Northeast Tennessee, Foster Levy, David L. Wagner, Elaine S. Walker

ETSU Faculty Works

An outbreak of Deidamia inscriptum (Lettered Sphinx Moth) caterpillars was noted in northeast Tennessee where Oxydendrum arboreum (Sourwood) trees were defoliated. Nearly all published literature and online resources list only plants in the grape family (Vitaceae) as larval food plants. Food-plant preference trials using fresh leaves of 3 woody plant species showed that Deidamiacaterpillars from this region had a preference for Sourwood over Parthenocissus quinquefolia(Virginia Creeper), and rejected Acer rubrum (Red Maple), a non-host species. Ursus americanus(Black Bear) were feeding on the caterpillars as evidenced by bent and broken Sourwood saplings bearing claw marks and by abundant …


Mapping Quantitative Trait Loci For Resistance To Goss’S Bacterial Wilt And Leaf Blight In North American Maize By Joint Linkage Analysis, Amritpal Singh, Aaron P. Andersen, Tamra A. Jackson-Ziems, Aaron J. Lorenz Sep 2016

Mapping Quantitative Trait Loci For Resistance To Goss’S Bacterial Wilt And Leaf Blight In North American Maize By Joint Linkage Analysis, Amritpal Singh, Aaron P. Andersen, Tamra A. Jackson-Ziems, Aaron J. Lorenz

Department of Plant Pathology: Faculty Publications

Goss’s wilt and leaf blight is a bacterial disease of maize (Zea mays L.) caused by the Gram-positive bacterium Clavibacter michiganensis subsp. nebraskensis. Goss’s wilt has reemerged as an important disease in the western United States and is spreading to other areas. Although the reasons for this reemergence are not completely known, it is important to understand the genetic basis of resistance to Goss’s wilt. The objective of this study was to map the quantitative trait loci (QTL) underlying resistance to Goss’s wilt. To achieve this objective, joint linkage and linkage mapping in 3 of the 25 nested …


Pengujian Efektivitas Berbagai Jenis Dan Konsentrasi Sitokinin Terhadap Multiplikasi Tunas Mikro Pisang (Musa Paradisiaca L.) Secara In Vitro, Bella Dian Ratnasari., Erni Suminar, Anne Nuraini, Ade Ismail Aug 2016

Pengujian Efektivitas Berbagai Jenis Dan Konsentrasi Sitokinin Terhadap Multiplikasi Tunas Mikro Pisang (Musa Paradisiaca L.) Secara In Vitro, Bella Dian Ratnasari., Erni Suminar, Anne Nuraini, Ade Ismail

Jurnal Kultivasi

Perbanyakan tanaman pisang secara konvensional dengan menggunakan bonggol atau anakan (sucker) secara terus menerus dapat menurunkan kualitas dan memerlukan waktu lama serta meningkatkan terjadinya serangan penyakit. Oleh karena itu, suatu upaya untuk menghasilkan bibit yang memiliki kualitas baik dalam waktu yang cepat dapat menggunakan kultur in vitro. Percobaan ini bertujuan untuk memperoleh laju multiplikasi yang tinggi dengan penggunaan salah satu jenis dan konsentrasi sitokinin pada kultur in vitro tanaman pisang kepok kuning. Percobaan dilakukan pada bulan Oktober hingga Desember 2015 di Laboratorium Kultur Jaringan Teknologi Benih Fakultas Pertanian Universitas Padjadjaran. Rancangan percobaan menggunakan Rancangan Acak Lengkap (RAL) yang terdiri dari …


Pengaruh Kerapatan Naungan Dan Frekuensi Penyiraman Terhadap Pertumbuhan Bibit Kemiri Sunan (Reutealis Trisperma (Blanco) Airy Shaw), Nadiyah Mia Audina, Yudithia Maxiselly, Santi Rosniawaty Aug 2016

Pengaruh Kerapatan Naungan Dan Frekuensi Penyiraman Terhadap Pertumbuhan Bibit Kemiri Sunan (Reutealis Trisperma (Blanco) Airy Shaw), Nadiyah Mia Audina, Yudithia Maxiselly, Santi Rosniawaty

Jurnal Kultivasi

Intensitas cahaya matahari dan penyiraman tanaman memegang peranan penting dalam proses pertumbuhan dan perkembangan tanaman serta merupakan bahan baku proses fotosintesis. Penelitian ini bertujuan untuk mengetahui pengaruh kerapatan naungan dan frekuensi penyiraman yang optimal terhadap pertumbuhan bibit kemiri sunan. Penelitian ini telah dilakukan di kebun percobaan Ciparanje, Jatinangor, Kabupaten Sumedang, Jawa Barat dengan ketinggian tempat 725 meter di atas permukaan laut pada bulan November 2015 sampai Januari 2016. Rancangan yang digunakan adalah rancangan petak terbagi dengan empat ulangan. Petak utama adalah perlakuan kerapatan naungan yang terdiri dari tiga taraf yaitu: tanpa naungan, naungan 35% dan naungan 25%. Anak petak adalah …


Pengaruh Aplikasi Pelapisan Benih Terhadap Viabilitas Benih Terdeteriorasi Serta Pertumbuhan Tanaman Kedelai, Sumadi, P. Suryatmana, Denny Sobardini Aug 2016

Pengaruh Aplikasi Pelapisan Benih Terhadap Viabilitas Benih Terdeteriorasi Serta Pertumbuhan Tanaman Kedelai, Sumadi, P. Suryatmana, Denny Sobardini

Jurnal Kultivasi

Kualitas benih akan mempengaruhi dinamika pertumbuhan tanaman. Tujuan penelitian ini adalah untuk mengkaji respons benih terdeteriorasi terhadap aplikasi berbagai pelapis benih, baik berupa insektisida maupun pelapis hayati berupa suspensi mikroorganisma yang dicerminkan dengan peningkatan laju tumbuh tanaman. Penelitian merupakan percobaan petak terbagi dua faktor, yaitu tingkat deteriorasi (D) yang terdiri dari benih berkualitas baik (DB = 84 %) dan benih terdeteriorasi (DB = 75 %). Pelapis benih yang digunakan terdiri dari Thiametoxam, Rhizobium sp, Azotobakter sp, campuran Azotobakter sp + Rhizobium sp, dan Trichoderma sp. Hasil Percobaan menunjukkan bahwa tidak ada pengaruh interaksi antara tingkat deteriorasi benih dengan jenis pelapis …


Bacterial Leaf Streak Of Corn Confirmed In Nebraska, Other Corn Belt States August 26, 2016, Tamra Jackson-Ziems, Kevin A. Korus, Tony Adesemoye, Julie Van Meter Aug 2016

Bacterial Leaf Streak Of Corn Confirmed In Nebraska, Other Corn Belt States August 26, 2016, Tamra Jackson-Ziems, Kevin A. Korus, Tony Adesemoye, Julie Van Meter

Department of Plant Pathology: Faculty Publications

Bacterial leaf streak disease of corn, caused by Xanthomonas vasicola pv. vasculorum, has now been confirmed in Nebraska, as well as in Colorado, Illinois, Iowa, and Kansas. The disease had not been previously identified in the U.S., but had been reported on corn in South Africa. Surveys are currently underway across the Corn Belt to identify the disease distribution. Initial observations and survey results suggest that it may be widely distributed throughout the Corn Belt. Unusual symptoms were first reported on corn samples received by the University of Nebraska Plant and Pest Diagnostic Clinic. Over the last two years, the …


Transcriptome Response Of Cassava Leaves Under Natural Shade, Zehong Ding, Yang Zhang, Yi Xiao, Fangfang Liu, Minghui Wang, Xinguang Zhu, Peng Liu, Qi Sun, Wenquan Wang, Ming Peng, Tom Brutnell, Pinghua Li Aug 2016

Transcriptome Response Of Cassava Leaves Under Natural Shade, Zehong Ding, Yang Zhang, Yi Xiao, Fangfang Liu, Minghui Wang, Xinguang Zhu, Peng Liu, Qi Sun, Wenquan Wang, Ming Peng, Tom Brutnell, Pinghua Li

Center for Plant Science Innovation: Faculty Publications

Cassava is an important staple crop in tropical and sub-tropical areas. As a common farming practice, cassava is usually cultivated intercropping with other crops and subjected to various degrees of shading, which causes reduced productivity. Herein, a comparative transcriptomic analysis was performed on a series of developmental cassava leaves under both full sunlight and natural shade conditions. Gene expression profiles of these two conditions exhibited similar developmental transitions, e.g. genes related to cell wall and basic cellular metabolism were highly expressed in immature leaves, genes involved in lipid metabolism and tetrapyrrole synthesis were highly expressed during the transition stages, and …


In Vitro Motility Of Actin Filaments Powered By Plant Myosins Xi, Cesar A. Quintana-Cataño, Christopher J. Staiger, Weiwei Zhang Aug 2016

In Vitro Motility Of Actin Filaments Powered By Plant Myosins Xi, Cesar A. Quintana-Cataño, Christopher J. Staiger, Weiwei Zhang

The Summer Undergraduate Research Fellowship (SURF) Symposium

The actomyosin network is thought to support fundamental processes of plant development and cell expansion such as polarized elongation of root hairs and the diffuse growth of epidermal and mesophyll cells. Inhibition of myosins via pharmacological treatments represents one of the key approaches for understanding of their roles in different cellular processes. However, the use of the standard plant myosin inhibitor, 2,3-butanedionemonoxime (BDM), is questioned as it requires a high concentration and may not be as specific as desired. By testing drugs that inhibit animal and yeast myosins V, the Staiger laboratory previously found pentabromopseudilin (PBP) as a potential inhibitor …


Validation Of Reference Genes For Robust Qrt-Pcr Gene Expression Analysis In The Rice Blast Fungus Magnaporthe Oryzae, Sarena Che Omar, Michael A. Bentley, Giulia Morieri, Gail M. Preston, Sarah J. Gurr, Richard Wilson (Editor) Aug 2016

Validation Of Reference Genes For Robust Qrt-Pcr Gene Expression Analysis In The Rice Blast Fungus Magnaporthe Oryzae, Sarena Che Omar, Michael A. Bentley, Giulia Morieri, Gail M. Preston, Sarah J. Gurr, Richard Wilson (Editor)

Department of Plant Pathology: Faculty Publications

The rice blast fungus causes significant annual harvest losses. It also serves as a genetically- tractable model to study fungal ingress. Whilst pathogenicity determinants have been unmasked and changes in global gene expression described, we know little about Magnaporthe oryzae cell wall remodelling. Our interests, in wall remodelling genes expressed during infection, vegetative growth and under exogenous wall stress, demand robust choice of reference genes for quantitative Real Time-PCR (qRT-PCR) data normalisation. We describe the expression stability of nine candidate reference genes profiled by qRT-PCR with cDNAs derived during asexual germling development, from sexual stage perithecia and from vegetative mycelium …


The Biology And Management Of Waterhemp In Indiana, Joseph M. Heneghan Aug 2016

The Biology And Management Of Waterhemp In Indiana, Joseph M. Heneghan

Open Access Theses

Waterhemp is a dioecious weed species indigenous to the Midwestern United states yet it has only recently become problematic in agronomic crop production in Indiana. Waterhemp is a small-seeded broadleaf which has increased in prevalence in conjunction with an increase in conservation tillage practices. Waterhemp germinates and emerges from the top 3 cm of soil and is known to exhibit extended periods of continual emergence, longer than most other summer annual weed species that are typically present in agronomic production settings. As a C4 species, waterhemp then grows rapidly and is capable of producing thousands of seeds, while effectively competing …


Do Novel Weapons That Degrade Mycorrhizal Mutualisms Explain Invasive Species Success?, Philip L. Pinzone Mr. Aug 2016

Do Novel Weapons That Degrade Mycorrhizal Mutualisms Explain Invasive Species Success?, Philip L. Pinzone Mr.

Biology Theses

Invasive plants often dominate novel habitats where they did not co-evolve with local species. Several hypotheses suggest mechanisms that explain increased exotic plant success, including 'novel weapons' and 'degraded mutualisms'. Japanese knotweed (Fallopia japonica) and European buckthorn (Rhamnus cathartica) are widespread plant invaders in North America that can dominate ecosystems. The goal of this study is to test whether these impacts are more consistent with novel weapons or degraded mutualism hypotheses. I examine tree seedling recruitment, (germination and initial survival) growth, (biomass) and mycorrhizal invasion (AMF content) as a function of F. japonica and R. cathartica …


Characterization Of Sip470, A Family 1 Lipid Transfer Protein And Its Role In Plant Stress Signaling, Timothy Ndagi Audam Aug 2016

Characterization Of Sip470, A Family 1 Lipid Transfer Protein And Its Role In Plant Stress Signaling, Timothy Ndagi Audam

Electronic Theses and Dissertations

SIP470, a putative tobacco lipid transfer protein, was identified in a yeast two-hybrid screen to interact with SABP2. SABP2 is a critical role in SA-mediated signaling in tobacco and other plants. In vitro studies using purified recombinant SIP470 confirmed that it is a lipid binding protein. In an attempt to determine its role in mediating stress responses, Arabidopsis T-DNA insertion knockout lines lacking SIP470 homolog were used for the analysis. These mutant plants were defective in basal resistance against microbial pathogens. Expression of defense gene PR-1 was also delayed in these mutant plants. Interestingly, these mutant plants were not defective …


Genetic Basis Of Biosynthesis And Cytotoxic Activity Of Medicago Truncatula Triterpene Saponins, Brynn Kathleen Lawrence Aug 2016

Genetic Basis Of Biosynthesis And Cytotoxic Activity Of Medicago Truncatula Triterpene Saponins, Brynn Kathleen Lawrence

Graduate Theses and Dissertations

Saponins are a large family of specialized metabolites produced in many plants. They can have negative effects on a number of plant pests and are thought to play a role in plant defense. With current and possible future uses in industry and agriculture, saponins have also been shown to be hypocholesterolemic, hypoglycemic, immunostimulatory, antioxidative, anti-inflammatory, and cytotoxic. In spite of their usefulness, our understanding of the genetic basis for saponin biosynthesis is still incomplete. We generated recombinant populations with parents from genetically distinct accessions of Medicago truncatula, with either high or low accumulation and varying profiles of saponins. Primers for …


Characterization Of Echinochloa Spp. In Arkansas, Hussain Tahir Aug 2016

Characterization Of Echinochloa Spp. In Arkansas, Hussain Tahir

Graduate Theses and Dissertations

Echinochloa species are the most problematic grass weeds in rice and soybean production throughout the southern United States. The species under this genus has high intra- and interspecific variability, with many ecotypes, observed within a species. This study was conducted to: i) characterize the morphology and phenology of Echinochloa accessions from Arkansas in a common garden; ii) verify the species identity of these accessions based on their morphological traits, and iii) evaluate the dormancy characteristics of Echinochloa accessions. Junglerice (E. colona) was identified as the most common species, comprising about 78% of the accessions collected, with barnyardgrass (E. crus-galli) and …


High Throughput Phenotypic Evaluation Of Drought-Related Traits In Soybean, Hua Bai Aug 2016

High Throughput Phenotypic Evaluation Of Drought-Related Traits In Soybean, Hua Bai

Graduate Theses and Dissertations

Drought limits crop growth and yield in soybean. Rapid and effective methods of screening large numbers of soybean lines for drought tolerance are urgently needed. Two experiments were conducted to evaluate the effects of drought in soybean during reproductive stages. In the first experiment five genotypes from maturity groups 2 through 5 were tested under well-irrigated and drought conditions. Beginning at R5, leaf samples were taken for nitrogen concentration analysis. Pictures were taken across the top of each plot to determine the intensity of greenness using the Dark Green Color Index (DGCI). Aerial photographs were also taken to determine aerial …


Assessment Of Concentrations Of Trace And Toxic Heavy Metals In Soil And Vegetables Grown In The Vicinity Of Manyoni Uranium Depositin Tanzania, F.A. Kapile, In Makundi Jul 2016

Assessment Of Concentrations Of Trace And Toxic Heavy Metals In Soil And Vegetables Grown In The Vicinity Of Manyoni Uranium Depositin Tanzania, F.A. Kapile, In Makundi

Tanzania Journal of Science

This study reports on determination of concentrations of trace and toxic heavy metals in soil and vegetables grown near of Manyoni uranium deposit. Soil and vegetable samples were collected from five sites namely Mitoo Mbuga, farming area, Miyomboni, Tambukareli and near water pump. The concentrations of heavy metals in soil and edible vegetables samples were analyzed using Energy Dispersive X-ray Fluorescence Spectrometry (EDXRF).All vegetable samples were found to have higher concentrations (in μg/g) of trace elements such as Ni (67.3) in pea leaves, Cu (14.9) in pumpkin leaves, Fe (478.6), (200.5) and (337.1) in pea, pumpkin and spinach leaves respectively, …


Variation In Leaf Wettability Traits Along A Tropical Montane Elevation Gradient, Gregory R. Goldsmith, Lisa Patrick Bentley, Alexander Shenkin, Norma Salinas, Benjamin Blonder, Roberta E. Martin, Rosa Castro-Ccossco, Percy Chambi-Porroa, Sandra Diaz, Brian J. Enquist, Gregory P. Asner, Yadvinder Malhi Jul 2016

Variation In Leaf Wettability Traits Along A Tropical Montane Elevation Gradient, Gregory R. Goldsmith, Lisa Patrick Bentley, Alexander Shenkin, Norma Salinas, Benjamin Blonder, Roberta E. Martin, Rosa Castro-Ccossco, Percy Chambi-Porroa, Sandra Diaz, Brian J. Enquist, Gregory P. Asner, Yadvinder Malhi

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

  • Leaf wetting is often considered to have negative effects on plant function, such that wet environments may select for leaves with certain leaf surface, morphological, and architectural traits that reduce leaf wettability. However, there is growing recognition that leaf wetting can have positive effects.
  • We measured variation in two traits, leaf drip tips and leaf water repellency, in a series of nine tropical forest communities occurring along a 3300-m elevation gradient in southern Peru. To extend this climatic gradient, we also assembled published leaf water repellency values from 17 additional sites. We then tested hypotheses for how these traits should …


Leaf Protein And Mineral Concentrations Across The “Miracle Tree” Genus Moringa, Mark E. Olson, Renuka P. Sankaran, Jed W. Fahey, Michael A. Grusak, David Odee, Wasif Nouman Jul 2016

Leaf Protein And Mineral Concentrations Across The “Miracle Tree” Genus Moringa, Mark E. Olson, Renuka P. Sankaran, Jed W. Fahey, Michael A. Grusak, David Odee, Wasif Nouman

Publications and Research

The moringa tree Moringa oleifera is a fast-growing, drought-resistant tree cultivated across the lowland dry tropics worldwide for its nutritious leaves. Despite its nutritious reputation, there has been no systematic survey of the variation in leaf nutritional quality across M. oleifera grown worldwide, or of the other species of the genus. To guide informed use of moringa, we surveyed protein, macro-, and micro- nutrients across 67 common garden samples of 12 Moringa taxa, including 23 samples of M. oleifera. Moringa oleifera, M. concanensis, M. stenopetala, an M. concanensis X oleifera hybrid, and M. longituba were highest in protein, with M. …


Cross Species Selection Scans Identify Components Of C4 Photosynthesis In The Grasses, Pu Huang, Anthony J. Studer, James C. Schnable, Elizabeth A. Kellogg, Thomas P. Brutnell Jul 2016

Cross Species Selection Scans Identify Components Of C4 Photosynthesis In The Grasses, Pu Huang, Anthony J. Studer, James C. Schnable, Elizabeth A. Kellogg, Thomas P. Brutnell

Department of Agronomy and Horticulture: Faculty Publications

C4 photosynthesis is perhaps one of the best examples of convergent adaptive evolution with over 25 independent origins in the grasses (Poaceae) alone. The availability of high quality grass genome sequences presents new opportunities to explore the mechanisms underlying this complex trait using evolutionary biology-based approaches. In this study, we performed genome-wide cross-species selection scans in C4 lineages to facilitate discovery of C4 genes. The study was enabled by the well conserved collinearity of grass genomes and the recently sequenced genome of a C3 panicoid grass, Dichanthelium oligosanthes. This method, in contrast to previous studies, …


Regulation Of Plant Productivity By Carbon-Based Nanomaterials: Approach And Evaluation Of Risks, Mohamed Hassen Lahiani Jul 2016

Regulation Of Plant Productivity By Carbon-Based Nanomaterials: Approach And Evaluation Of Risks, Mohamed Hassen Lahiani

Theses and Dissertations

Carbon-based nanomaterials (CBN) are a unique type of nanomaterials with promising application in different fields including, medicine, genetic engineering, and plant biology. Nanomaterials-plant interaction is a new and emerging area of Nanobiotechnology. Some nano-sized materials are described as promising candidates for the regulation of plant growth, reduction of plant diseases, and delivery of molecules (herbicides, DNA, proteins) inside plant cells and to specific tissues. This study evaluated the potential use of different CBN to stimulate seed germination and plant growth of wide-range of valuable crops. We demonstrated the positive effect of short-term and long-term CBN exposure on the seed germination, …


Combinatory Effect Of Changing Co2, Temperature, And Long-Term Growth Temperature On Isoprene Emissions, Michael Cole Jul 2016

Combinatory Effect Of Changing Co2, Temperature, And Long-Term Growth Temperature On Isoprene Emissions, Michael Cole

DePaul Discoveries

Isoprene, the most abundant hydrocarbon in the atmosphere, plays a significant role in atmospheric chemistry. Its reactions with NOx lead to the formation of ozone in the lower troposphere, which is harmful to plants and detrimental to human health. As air temperatures and CO2 concentrations increase with climate change, it is uncertain how isoprene emissions from plants will respond. We hypothesized that isoprene emissions will increase with the combination of increasing temperature and CO­2 concentrations. We predict that oaks grown at a higher temperature will exhibit an increase in isoprene emissions with combined short-term increases in temperature …


The Correlation Between Basal Isoprene Emissions And Climate Of The Native Range Across Oak Species, Mary J. Babiez Jul 2016

The Correlation Between Basal Isoprene Emissions And Climate Of The Native Range Across Oak Species, Mary J. Babiez

DePaul Discoveries

Isoprene is a biogenic volatile organic compound that is emitted by various plant species and plays an important role in the chemistry of the atmosphere. When it reacts with pollutants in the air, such as nitrogen oxides, the precursor to ozone (O3) is formed. In this experiment, we measured leaf emissions from 20 different oak species at the Morton Arboretum (Lisle, Illinois). The aim was to better understand differences in isoprene emissions across oak species. Since emissions have been found to protect leaves against brief periods of heat stress, we hypothesized that oaks native to areas with greater …


Trimethylated Lysine 4 At Histone 3 Shows The Same Circadian Rhythm At Promoters Of Diversely-Expressed Genes In Chlamydomonas Reinhardtii, Robyn M. Wilson Jul 2016

Trimethylated Lysine 4 At Histone 3 Shows The Same Circadian Rhythm At Promoters Of Diversely-Expressed Genes In Chlamydomonas Reinhardtii, Robyn M. Wilson

Masters Theses & Specialist Projects

Circadian clocks are biochemical mechanisms that allow eukaryotic and some prokaryotic organisms to coordinate their physiology with daily environmental changes. It enables organisms to increase their fitness by taking advantage of beneficial environmental conditions while also avoiding or restricting certain sensitive processes during harsh conditions. Similarly, post-translational histone modifications allow eukaryotic organisms to regulate gene expression in response to environmental or developmental factors. Some post-translational modifications of histones are associated with active transcription while others are associated with repressed transcription depending upon the location, type and degree of modification. Trimethylation of lysine 4 on the N-terminal tail of histone H3 …


Lof1 And Interacting Transcription Factors In Plant Development And Crop Yield, Zoe Yeoh, Elizabeth Luscher, Patricia Springer Jul 2016

Lof1 And Interacting Transcription Factors In Plant Development And Crop Yield, Zoe Yeoh, Elizabeth Luscher, Patricia Springer

Student Publications

Transcription factors (TFs) help ensure proper gene expression in developing tissues, and thus play a role in plant development and plant architecture. LATERAL ORGAN FUSION1, or LOF1, is a TF expressed in the organ boundaries of Arabidopsis thaliana. lof1 mutants have fused axillary branches and cauline leaves, which indicates importance in boundary development. Because transcription factors are known to act in complexes, we wanted to discover what other proteins interact with LOF1. We executed a yeast-2-hybrid (Y2H) screen that identified several TFs as potential interactors: WHIRLY 3 (WHY3), MYB DOMAIN PROTEIN32 (MYB32), HOMEOBOX-LEUCINE ZIPPER PROTEIN4 (HB4), and LIGHT RESPONSE BTB2 …


Endless Symbioses Most Intricate, W. John Hayden Jul 2016

Endless Symbioses Most Intricate, W. John Hayden

Biology Faculty Publications

Orchids, such as our Wildflower of the Year for 2016, Downy Rattlesnake Plantain (Goodyera pubescens) (Fig. 1), exemplify the interconnectedness of life on Earth. As would be the case for many kinds of plants, pollination comes readily to mind as a prominent example of mutualistic symbiosis. Downy Rattlesnake Plantain is pollinated by bumblebees and other native bees. The bees gain nectar and the orchid gets an efficient means to move pollen from one flower to another; each organism gains benefit from the interaction, the very definition of mutualism. Pollination by bees is widespread among the orchids, but there …


Rna-Seq Based Analysis Of Population Structure Within The Maize Inbred B73, Zhikai Liang, James C. Schnable Jun 2016

Rna-Seq Based Analysis Of Population Structure Within The Maize Inbred B73, Zhikai Liang, James C. Schnable

Center for Plant Science Innovation: Faculty Publications

Recent reports have shown than many identically named genetic lines used in research around the world actually contain large amounts of uncharacterized genetic variation as a result of cross contamination of stocks, unintentional crossing, residual heterozygosity within original stocks, or de novo mutation. 27 public, large scale, RNA-seq datasets from 20 independent research groups around the world were used to assess variation within the maize (Zea mays ssp. mays) inbred B73, a four decade old variety which served as the reference genotype for the original maize genome sequencing project and is widely used in genetic, genomic, and phenotypic research. Several …