Digital Commons Network^™

Vibrational And Electronic Spectroscopy Of 2-Cyanoindene Cations, Thomas E. Douglas-Walker, Eleanor K. Ashworth, Mark H. Stockett, Francis C. Daly, Isabelle Chambrier, Vincent J. Esposito, Marius Gerlach, Angel Zheng, Julianna Palotás, Andrew N. Cammidge, Ewen K. Campbell, Sandra BrüNken, James N. Bull

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

2-Cyanoindene is one of the few specific aromatic or polycyclic aromatic hydrocarbon (PAH) molecules positively identified in Taurus molecular cloud-1 (TMC-1), a cold, dense molecular cloud that is considered the nearest star-forming region to Earth. We report cryogenic mid-infrared (550–3200 cm^–1) and visible (16,500–20,000 cm^–1, over the D2 ← D0 electronic transition) spectra of 2-cyanoindene radical cations (2CNI⁺), measured using messenger tagging (He and Ne) photodissociation spectroscopy. The infrared spectra reveal the prominence of anharmonic couplings, particularly over the fingerprint region. There is a strong CN-stretching mode at 2177 ± 1 cm^–1 (4.593 …

Gpu-Accelerated Community Detection: Performance Comparison Of Networkx And Cugraph, Venkata Satyanarayana Pulaparthi

Masters Projects

Community detection in complex networks is an essential process in the field of network science, offering insights into the underlying structure and functionality of interconnected systems. As the scale and complexity of networks grows, traditional CPU-based methods for community detection struggle to keep pace, leading to the exploration of GPU-accelerated solutions.

This project investigates the implementation of the Louvain algorithm for community detection using GPU-accelerated computing via the CuGraph library. By comparing it too traditional CPU based methods implemented with NetworkX, this study examines performance improvements, scalability, and applicability across real-world datasets. Two networks were used for experimentation: Zachary’s Karate …

The Role Of Nutrient Solutions On Phosphate-Solubilizing Bacteria Population, Phosphorus Availability, Phosphorus Uptake, Growth And Yield Of Red Chili (Capsicum Annuum L.), Betty Natalie Fitriatin, Raden Faqih Hilmiy Ghifari, Emma Trinurani Sofyan, Fitri Widiantini, Hanif Fakhrurroja, Tualar Simarmata

Jurnal Kultivasi

Red chili consumption in Indonesia has increased every year. However, with large chili production to meet large consumption, land conversion for various purposes has reduced the harvested area. The efforts to increase the harvested area of chili using Inceptisols soil by providing nutrient solutions to overcome the infertility of the soil using its nutrients. This experiment aims to determine the effect of nutrient solution application on the population of phosphate-solubilizing bacteria, phosphorus availability, phosphorus uptake, growth, and yield of Red Chili (Capsicum annuum L.) in Inceptisols. The experiment was conducted from August 2023 to February 2024 at Ciparanje Experimental Field, …

An Energy Resource Management For Cluster Based Iohv Supported By Fog Computing, Ahmed Jawad Kadhim

Karbala International Journal of Modern Science

Internet of Hybrid Vehicle Networks (IoHV) is a network generated by merging the Internet with a Hybrid Vehicular Ad-Hoc Network (H-VANET). In IoHV, various types of electric and fuel vehicles create tasks. However, executing several tasks by electric vehicles affects their lifetime because they suffer from energy limitation issues which is one of the IoHV challenges. On the other hand, fuel vehicles and fog nodes have unlimited energy and can be used to execute most tasks of electric vehicles quickly. In this paper, we produce a new Energy Resource management Technique for IoHV called ERTH that aims to offload the …

Geomorphic Evolution Of St. Augustine Inlet, St. Johns County, Florida, Kristen Becker

Theses and Dissertations

Tidal inlets interrupt longshore sediment transport, influencing adjacent beach morphology and allowing the exchange of water and sediment between the open oceans and protected back barrier bay. Inlets evolve through a combination of natural processes and are highly dynamic zones where sediment exchanges cause shifting shoreline positions nearby and create new morphological features. Barrier islands/beaches that are close in proximity to inlets evolve and are an important natural feature that dissipates wave energy and protects inland areas. Both natural and anthropogenic processes that affect barrier islands will be investigated during this study, including storm activity, waves, wind, water level, and …

Analysis Of Cortical Evoked Auditory Response Detection In Adults Using Machine Learning, Pranavi Beerelli

Theses and Dissertations

This study focuses on the use of machine learning (ML) techniques to automate the detection of Cortical Evoked Auditory Responses (CEARs), which are key in understanding how the auditory cortex processes sound stimuli. Traditionally, analyzing these auditory responses has relied on manual interpretation by audiologists, a process that can introduce variability and human error, particularly in complex cases. To address this challenge, the research utilizes advanced deep learning models, including Convolutional Neural Networks (CNNs), Long Short Term Memory (LSTM) networks, and Bidirectional LSTM (BiLSTM) architectures, to analyze Electroencephalography (EEG) data and classify the presence or absence of auditory responses automatically. …

Identifying Opportunities For Nature-Based Solutions With Geospatialized Life Cycle Assessments And Fine-Scale Socioecological Data, Gabriela Shirkey, Annick Anctil, Ranjeet John, Venkatesh Kolluru, Leah Mungai, Herve Kashongwe, Lauren T. Cooper, Ilke Celik, Joshua B. Fisher, Jiquan Chen

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As we increasingly understand the impact that land management intensification has on local and global climate, the call for nature-based solutions (NbS) in agroecosystems has expanded. Moreover, the pressing need to determine when and where NbS should be used raises challenges to socioecological data integration as we overcome spatiotemporal resolutions. Natural and working lands is an effort promoting NbS, particularly emissions reduction and carbon stock maintenance in forests. To overcome the spatiotemporal limitation, we integrated life cycle assessments (LCA), an ecological carbon stock model, and a land cover land use change model to synthesize rates of global warming potential (GWP) …

Key Epigenetic And Signaling Factors In The Formation And Maintenance Of The Blood-Brain Barrier, Jayanarayanan Sadanandan, Sithara Thomas, Iny Elizabeth Mathew, Zhen Huang, Spiros L Blackburn, Nitin Tandon, Hrishikesh Lokhande, Pierre D Mccrea, Emery H Bresnick, Pramod K Dash, Devin W Mcbride, Arif Harmanci, Lalit K Ahirwar, Dania Jose, Ari C Dienel, Hussein A Zeineddine, Sungha Hong, Peeyush Kumar T

Faculty, Staff and Student Publications

The blood-brain barrier (BBB) controls the movement of molecules into and out of the central nervous system (CNS). Since a functional BBB forms by mouse embryonic day E15.5, we reasoned that gene cohorts expressed in CNS endothelial cells (EC) at E13.5 contribute to BBB formation. In contrast, adult gene signatures reflect BBB maintenance mechanisms. Supporting this hypothesis, transcriptomic analysis revealed distinct cohorts of EC genes involved in BBB formation and maintenance. Here, we demonstrate that epigenetic regulator's histone deacetylase 2 (HDAC2) and polycomb repressive complex 2 (PRC2) control EC gene expression for BBB development and prevent Wnt/β-catenin (Wnt) target genes …

Intramolecular Styryl Diels-Alder (Isda) Reaction For Synthesizing Derivatives Of Anticancer Lignans, Kriti Shrestha

Theses and Dissertations

Intramolecular Styryl Diels-Alder (ISDA) cycloaddition reactions are used widely in synthesizing complex natural products. They help synthesize polycyclic cores and form new chiral centers in the molecule. Among such natural products, lignans are considered important biomedical molecules due to their numerous pharmacological properties, such as antitumor, hepatoprotective, insecticidal, antifungal, antihypertensive, sedative, antioxidant, and antiparasitic. Numerous researchers have published their work in trying to synthesize different lignans for medicinal purposes. However, the lignans are challenging to synthesize because of their complex tetralin cores. This project focuses on synthesizing the polycyclic core for the analogs of anti-cancer compounds with ISDA reaction. The …

Are There Neurological Impacts Of Exposure To A Burned Wildfire Site As It Recovers?, Rubye Strickland

Undergraduate Honors Theses

Wildfires are increasing with climate change, making the human health implications of exposure to burned soils an essential area of research. Metals associated with fire-impacted soils can be inhaled or accidentally ingested by surrounding communities, causing health risks. Several studies have evaluated the health impact of wildfires, but few have done so from a neurological perspective. This study explores metal changes in burned soils over time as a site naturally recovers from wildfire and how these changes may impact human neurological health. Soil samples were collected from the burned area 0, 3, 6, 9, and 12 months after the fire. …

Climate- And Land-Use Change Impacts On Ecosystem Services Provided By Prairie Pothole Wetlands, Alina Mullins

Master's Projects and Capstones

Prairie pothole wetlands are a type of depressional, isolated wetland that can be found in the glaciated landscape of the mid-central United States and portions of southern Canada, also referred to as the Prairie Pothole Region (PPR). The region is consistently recognized for its historic production and support of migratory waterfowl populations among other types of mammals and invertebrates largely due to the variability in pothole wetlands water levels and vegetative structure. Isolated from other waterbodies and lacking surface water connections, the hydrology of prairie pothole wetlands is influenced by the region’s continental climate. Historically, the region receives much of …

Biothermodynamics Of Metal And Dna Coordination To The Pneumococcal Transcription Factors Adcr, Scza, And Copr, Alexander James Cutright

Theses and Dissertations

ransition metals are micronutrients that play critical roles in all forms of life, acting as stabilizing ions, catalytic centers, and as signaling ions. Due to their importance, classes of biomolecules have been designed with the sole purpose of regulating their intracellular concentrations. One group of which are transcription factors, which regulate intracellular metal concentration by activating or repressing transcription, dependent on metal availability. The activation of transcription factors by metal availability can be attested to conformational changes that are governed by both dynamics and thermodynamics. Due to the influential nature of transcription factors, their activity and activation mode have become …

Synergistic Adsorption Of Pb (Ii) From Aqueous Solution Using Calcined Biochar-Bentonite Clay Hybrid, Azeezat Faderera Abdul-Raheem

Theses and Dissertations

The biochar-bentonite clay hybrid was prepared by coprecipitation with the goal of producing a material that can remove Pb (II) from aqueous solutions effectively. Incorporating bentonite clay onto the Douglas fir biochar (DFB-BTC) surface significantly improved the adsorption capacity by introducing more active sites, strengthening the structural properties, and promoting strong adsorbate interactions. The point of zero charge of the adsorbent was slightly higher than that of the pristine DFBC. All sorption experiments were performed at pH 5, and the system obeyed the Langmuir adsorption isotherm. The highest Langmuir adsorption capacities observed at 298, 308, and 318 K were 48, …

Engineering Functionalized Nanomaterials For Targeting And Ablating Biofilms On Surfaces, Dhanush Lakmal Yapa Amarasekara

Theses and Dissertations

Biofilms on both the surface and interior of medical devices pose major challenges, including hindering device performance and serving as infection sources. These biofilms form a protective layer around bacteria, shielding them from the body’s immune system and antibiotics. This makes infections difficult to treat, as the bacteria within the biofilm are resistant to both antibiotics and immune defenses. Additionally, biofilms can induce inflammation and irritation in nearby tissues, leading to further health complications. Antibiotic resistance raises concerns about the emergence of multi-drug resistant (MDR) pathogens. MDR infections are difficult to treat, leading to prolonged hospital stays and the need …

Algal Community Investigations: Present Day To Year-2100 For Mississippi Lakes And The Western Mississippi Sound, Emma Madison Tucker

Theses and Dissertations

Algae play a key role in the aquatic environment as primary producers; however, they can form harmful algal blooms that are detrimental to the aquatic environment, people, and even the economy. It is generally believed that climate change will influence future algal blooms. The first study estimated algae community in three freshwater locations in Mississippi, Desoto Lake, White’s Creek Lake, and Columbus Lake, and one saline location, Western Mississippi Sound, using modern and new tools of the autonomous surface vessel, FlowCam, and EcoTaxa. From those results and leading into the second study was the application of four climate scenarios on …

Exploring Single Particles Through Optical Trapping And Advanced Laser Spectroscopy Techniques, Haifa Hassan Alali

Theses and Dissertations

This dissertation explores the innovative integration of optical trapping (OT) with advanced laser spectroscopy techniques to investigate the physicochemical properties of single particles from a variety of atmospheric aerosols, such as bioaerosols, terrestrial dust, and extraterrestrial dust. Each technique offers unique insights, significantly enhancing our understanding of these critical atmospheric components. The first work focuses on employing OT in conjunction with cavity ringdown spectroscopy (OT-CRDS) to measure the single-particle extinction of interplanetary dust particles at ultraviolet wavelengths (~308 nm). This method allows for the stable trapping of individual dust particles in air, facilitating precise characterization with minimal external interference. Our …

Fisheries Management In Mississippi State-Operated Fishing Lakes: A Review And Look To The Future, Hayden Gregory Funk

Theses and Dissertations

The Mississippi Department of Wildlife, Fisheries and Parks currently manages 18 State Lakes and 17 State Park Lakes to provide public fishing opportunities. My goal was to conduct a comprehensive analysis of monitoring and management activities in State Lakes to enhance understanding of lake dynamics, further develop existing management initiatives, and identify alternative avenues for effective management. To achieve this objective, I have undertaken a comprehensive examination and synthesis of the historical background pertaining to State Lakes and conducted an analysis of pertinent data regarding lake characteristics such as the physical and chemical attributes of the lakes, the features of …

Impact Of Cascading Optical Processes On Spectroscopic Quantification Of Absorption And Scattering Properties Of Samples, Pathum Dilshan De Silva Wathudura

Theses and Dissertations

Light absorption and scattering are fundamental properties of matter, particularly significant in nanoscale materials. This study explores how cascading optical processes affect the experimental measurement of absorption and scattering intensities, along with scattering depolarization, in samples containing absorbers and scatterers. The experimental UV–vis spectrum results from the combination of absorption and scattering extinction spectra. However, the maximum measurable extinction may be limited by forward scattered light. Light absorption decreases the intensity of scattered light and influences scattering depolarization. While scattering can reduce absorption along the optical path to the detector, sufficient absorption of the scattered light may counterbalance this effect, …

Investigations Of Guayule Resin As A Wood Protectant, Queen Aguma

Theses and Dissertations

Wood products are subject to deterioration by numerous processes, as a biological material. Today, a significant area of preservative development is the utilization of existing plant residues that have water-repelling, antibacterial, antifungal, and insecticidal properties as components of wood protectants. Parthenium argentatum, known as guayule (wy-oo-lee), is a promising wood protectant due to its resin. However, the resin's complicated chemical, physical, and solvent-resistant properties make it difficult to use. The primary goal of this study was to eliminate the use of any solvent and rely on thermal modification only to fractionate usable compounds from guayule resin. Utilizing heated dialysis and …

Investigation Of Real-Time Gaseous Thermal Decomposition Products Of Representative Per- And Polyfluoroalkyl Substances (Pfas), Kateřina Litvanová, Bethany Klemetstrud, Feng Xiao, Alena Kubatova

Chemistry Faculty Publications

The thermal decomposition of per- and poly fluoroalkyl substances (PFAS) is poorly understood. Here, we present an innovative, comprehensive analytical method to investigate their thermal decomposition, including perfluorocarboxylic acids (PFCAs), alcohol, sulfonates, and GenX (acid dimer), focusing on identifying their breakdown products. In this study, evolved gas analysis–mass spectrometry (EGA-MS) was used for fast real-time screening to determine the significant temperatures to be investigated with the thermal desorption-pyrolysis coupled with gas chromatography–mass spectrometry (TD-Py-GC-MS), which provided detailed information about evolved PFAS and their breakdown products. This approach enabled a systematic study of perfluorocarboxylic acids (PFCAs) ranging from C₃ to …

Climate And Gypsum Parent Material Shape Biocrust Communities And Moss Ecology In The Chihuahuan And Mojave Deserts, Nicole Pietrasiak, Katelyn G. Gobbie, Brian Jusko, Rebecca E. Drenovsky

Life Sciences Faculty Research

Biological soil crust communities (biocrusts) establishing on gypsum soils have been well-documented for their prolific appearance and rich diversity of lichens and bryophytes. However, studies characterizing gypsum biocrusts have occurred primarily outside of the U.S., most of which lack comparisons to other soil types. We conducted intensive field surveys to evaluate the ground cover and frequency of biocrust functional groups and moss species on gypsum and non-gypsum soils in the U.S. regions with the most extensive gypsum outcrops, the northern Chihuahuan and eastern Mojave Deserts. Study sites were stratified by geomorphology and paired, so that every gypsum site was matched …

Sulfhydryl-Containing Compounds And Iron Homeostasis: Mechanisms Of Labile Iron Pool Dysregulation And Consequences For Cellular Health, Steven Lowell Mann Christiansen

Theses and Dissertations

While iron's unique coordination chemistry and redox activity have resulted in its broad incorporation into biological systems, dysfunction in key iron-regulating mechanisms can transform these biochemical advantages into factors that contribute to several pathological conditions. This dissertation explores the complex interactions between iron and sulfhydryl-containing compounds (SCCs), with particular focus on glutathione's (GSH) role in stabilizing iron reactivity juxtaposed with homocysteine's (Hcy) ability to disrupt iron homeostasis and promote disease progression. Through rigorous biochemical analysis and experimentation, we demonstrate that Hcy disrupts iron regulation through several mechanisms: (1) Hcy competitively displaces protective iron-binding molecules in the Labile Iron Pool (LIP), …

Design, Synthesis, And Nmr-Guided Characterization Of A Targeted Covalent Inhibitor-Like Molecule Against Ivyp1 From P. Aeruginosa, Samuel Taylor Moore

Master's Theses

Multi-drug resistance poses a serious threat to future generations and historical antibiotic pipelines; consequently, the medical and economic burdens associated with treating multidrug-resistant bacteria are substantiated. In this context, P. aeruginosa (PA) emerges as one of the most significant healthcare challenges, being a leading cause of resistance-associated mortality worldwide. Despite modern efforts to combat these poor outcomes, drug-resistant cases continue to rise, and the need for novel antibiotic treatment is apparent. To this end, we investigated relevant resistance mechanisms and past antibiotic targets within PA, and in doing so, we identified relationships between peptidoglycan biology and a periplasmic protein, Inhibitor …

A Survey Of Several Python Libraries Foe Computational Geometry, Meghana Kolluru

Masters Projects

This project delves into computational geometry, a crucial area of computer science, by

implementing algorithms to solve geometric problems using Python libraries like Shapely, SciPy,

and Triangle. It begins with foundational tasks such as creating geometric objects (points, lines,

polygons) and performing operations like calculating distances, intersections, and unions. These

basics lay the groundwork for tackling more advanced applications.

Key implementations include the Convex Hull, which computes the smallest convex

polygon enclosing a set of points, aiding in applications like collision detection and GIS. The

project also explores Voronoi Diagrams, which partition a plane into regions based on proximity,

and …

Exfoliated Hydrotalcite-Transition Metal Complex Composite For Eco-Friendly And Efficient Catalytic Degradation Of 4-Nitrophenol, Sidra Khan, Najma Memon, Saima Q. Memon, Yilmaz Yurekli

Karbala International Journal of Modern Science

Nitrophenols are notorious aquatic organic contaminants found as degradation products of various parent compounds, including pesticides and industrial chemicals that persist in the environment and must be removed. Catalytic degradation is one of the feasible routes to clean the contaminated water systems, however, environmental contamination with catalysts is also widespread. Herein, we report an environmentally friendly catalyst based on composited Fe-Schiff’s base with exfoliated layered double hydroxides (LDH) of aluminum and nickel (hydrotalcite). The composite showed agglomerated pleated LDH structures sheathed with Fe(III)SB. Nitrogen adsorption isotherm data exhibited improved surface area and narrow pores patterns for composite as compared to …

The Complete Genome Sequence Of Splendidofilaria Pectoralis (Onchocercidae, Rhabditida, Chromadorea, Nematoda), Andrew Sweet, Robert E. Wilson, Jack Reakoff, Sarah A. Sonsthagen, Colleen Hurst, Stacy Pirro

School of Natural Resources: Faculty Publications

We present the complete genome sequence of Splendidofilaria pectoralis, a nematode parasite of grouse (Aves: Galliformes: Tetraonini). Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28509439) and assembled genome (JBFSWT000000000).

The Utilization Of Alcohol Dehydrogenase (Adh) Enzymes In Stereocontrolled Synthesis, Gaurav Pramod Kudalkar

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Clostridium acetobutylicum alcohol dehydrogenase (CaADH) has been shown to catalyze the stereoselective reduction of a broad array of carbonyl compounds. This study uses a Hammett linear free-energy relationship (LFER) analysis to gain insight into CaADH enzyme mechanism across three substrate classes: aryl aldehydes, aryl β-keto esters, and aryl trifluoromethyl ketones. Kinetic data were collected by monitoring NADPH fluorescence, and Michaelis-Menten kinetics were applied. Hammett plots reveal that hydride transfer is rate-limiting for aldehydes and β-keto esters (ρ > 0), while it is proposed that dehydration is rate-limiting for trifluoromethyl ketones (ρ < 0). ¹³C NMR confirmed significant hydration in trifluoromethyl ketones. The …

Raman Characterization Of Elastomeric Materials, Shane Michael Drake

Theses and Dissertations

Raman spectroscopy is often used for material identification but may be used for characterization. This document focuses on using Raman measurements to characterize polymers, specifically the curing and aging mechanism for hydroxyl-terminated polybutadiene (HTPB). HTPB is a well-known elastomer used in sealants, non-slip surfaces, rocket repellants and plastic explosives. Raman spectroscopy was used to monitor urethane linkages that form from curing HTPB with a cyanate curing agent to suggest a curing mechanism for HTPB. Since this polymer is highly susceptible to oxidation, the methods used to characterize curing were also used for the aging process to see if urethane breakages …

Growth And Yield Of Bok Choy (Brassica Rapa L.) Plants In Post-Rock Excavation Soils Provided With Phosphate-Solubilizing Bacteria And Manure, Cecep Hidayat, Yati Setiati Rachmawati, Dhea Rizqi Utami, Sofiya Hasani, Anna Aina Roosda, Windhy Chandria

Jurnal Kultivasi

Elevated sand and gravel mining to meet market needs causes negative impacts on the environment, soil, and biodiversity. The government issued a regulation that requires revegetation as reclamation of mineral and coal mining. The conversion needs to overcome the physical and chemical characteristics of post-rock excavation soil that can be utilized by economic value plants such as bok choy. This experiment aimed to determine the growth and yield of bok choy on post-rock excavation soil by providing phosphate solubilizing bacteria (PSB) and various manure types. The study was conducted in Margasari Village, Buah Batu District, Bandung at an altitude of …

Bioremediation Of Pb And Cd Contaminated Soil By Mycorrhiza And Biochar Treatment And Its Effect On Growth And Yield Of Shallot, Okti Herliana, Wilis Cahyani, Yugi Rahayu Ahadiyat

Jurnal Kultivasi

The contamination of shallots in the food chain by heavy metals such as lead (Pb) and cadmium (Cd) is caused by chemical fertilizers and pesticides. The study aimed to determine the growth and yields of shallot cultivated on soil contaminated with Pb and Cd using mycorrhiza and biochar. The study was conducted in the screen house at Jenderal Soedirman University, Faculty of Agriculture, from April to September 2020, and it was carried out using a factorial Randomized Completely Block Design that involved three replications and two factors. The first factor of mycorrhiza dosage comprised 0, 1, and 2 g/pot, and …